Wall clock time and date at job start Tue Mar 31 2020 08:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.47114 * 2 1 4 4 C 1.46900 * 110.99963 * 217.39396 * 3 2 1 5 5 C 1.53001 * 109.46890 * 66.05137 * 4 3 2 6 6 H 1.08999 * 109.70856 * 304.99188 * 5 4 3 7 7 C 1.53475 * 109.70985 * 184.40470 * 5 4 3 8 8 O 1.43168 * 108.25295 * 180.55104 * 7 5 4 9 9 C 1.36109 * 116.71784 * 46.13319 * 8 7 5 10 10 C 1.38706 * 119.40259 * 162.94687 * 9 8 7 11 11 C 1.38196 * 120.06771 * 179.82653 * 10 9 8 12 12 C 1.38255 * 120.11531 * 0.02562 * 11 10 9 13 13 C 1.38196 * 120.11085 * 0.04420 * 12 11 10 14 14 C 1.38700 * 120.06612 * 359.97438 * 13 12 11 15 15 O 1.36131 * 119.37118 * 179.89357 * 14 13 12 16 16 C 1.46894 * 110.99854 * 93.43962 * 3 2 1 17 17 H 1.09001 * 109.47034 * 180.25324 * 16 3 2 18 18 C 1.52997 * 109.47282 * 60.25320 * 16 3 2 19 19 C 1.53006 * 109.47589 * 300.25277 * 16 3 2 20 20 C 1.50705 * 109.46828 * 299.27542 * 19 16 3 21 21 H 1.07997 * 120.00135 * 359.97438 * 20 19 16 22 22 C 1.37876 * 119.99789 * 179.97438 * 20 19 16 23 23 N 1.31515 * 120.00139 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99848 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47153 * 90.00123 * 24 22 20 26 26 H 1.48502 * 109.47452 * 209.99804 * 24 22 20 27 27 H 1.48504 * 109.47350 * 330.00249 * 24 22 20 28 28 H 1.09004 * 109.46814 * 292.08284 * 1 2 3 29 29 H 1.09000 * 109.47278 * 52.08313 * 1 2 3 30 30 H 1.08999 * 109.46862 * 172.08868 * 1 2 3 31 31 H 1.09004 * 109.47139 * 240.00572 * 2 1 3 32 32 H 1.09004 * 109.47581 * 119.99875 * 2 1 3 33 33 H 1.09007 * 109.46701 * 186.04452 * 4 3 2 34 34 H 1.08989 * 109.47469 * 306.04520 * 4 3 2 35 35 H 1.08994 * 109.71112 * 300.24150 * 7 5 4 36 36 H 1.09007 * 109.70816 * 60.82034 * 7 5 4 37 37 H 1.07995 * 119.96235 * 359.84504 * 10 9 8 38 38 H 1.08001 * 119.94143 * 179.97438 * 11 10 9 39 39 H 1.07995 * 119.94206 * 180.02562 * 12 11 10 40 40 H 1.08005 * 119.96414 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47090 * 299.99970 * 18 16 3 42 42 H 1.08999 * 109.47174 * 60.00087 * 18 16 3 43 43 H 1.09004 * 109.47648 * 179.97438 * 18 16 3 44 44 H 1.09001 * 109.46812 * 59.27037 * 19 16 3 45 45 H 1.08994 * 109.47271 * 179.27562 * 19 16 3 46 46 H 0.96997 * 119.99818 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.2224 1.5182 -0.8329 5 6 2.8600 1.2603 -2.2968 6 1 2.3752 0.2885 -2.3898 7 6 4.1305 1.2894 -3.1574 8 8 3.7549 1.0581 -4.5194 9 6 2.6869 1.7601 -4.9873 10 6 2.4862 1.8629 -6.3560 11 6 1.4043 2.5693 -6.8460 12 6 0.5194 3.1760 -5.9740 13 6 0.7143 3.0787 -4.6094 14 6 1.7983 2.3715 -4.1109 15 8 1.9779 2.2866 -2.7642 16 6 2.2727 1.8539 1.3689 17 1 2.6300 2.8833 1.3402 18 6 3.3310 0.9649 2.0251 19 6 0.9765 1.7864 2.1790 20 6 -0.0604 2.6760 1.5428 21 1 0.1812 3.2340 0.6502 22 6 -1.3173 2.7775 2.1002 23 7 -1.6117 2.0976 3.1869 24 14 -2.6023 3.8806 1.3120 25 1 -3.3790 3.1014 0.3146 26 1 -3.5196 4.3984 2.3588 27 1 -1.9298 5.0191 0.6359 28 1 -0.3633 0.3864 0.9523 29 1 -0.3634 0.6315 -0.8107 30 1 -0.3633 -1.0179 -0.1414 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.6255 2.5258 -0.7304 34 1 3.9697 0.7934 -0.5104 35 1 4.6120 2.2632 -3.0692 36 1 4.8162 0.5091 -2.8269 37 1 3.1761 1.3900 -7.0392 38 1 1.2503 2.6484 -7.9121 39 1 -0.3254 3.7270 -6.3601 40 1 0.0217 3.5539 -3.9303 41 1 2.9737 -0.0645 2.0538 42 1 4.2544 1.0130 1.4481 43 1 3.5191 1.3130 3.0408 44 1 0.6123 0.7592 2.1969 45 1 1.1671 2.1221 3.1983 46 1 -2.4961 2.1688 3.5788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276340083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:36 Heat of formation + Delta-G solvation = -53.217213 kcal Electronic energy + Delta-G solvation = -26274.958970 eV Core-core repulsion = 22743.957719 eV Total energy + Delta-G solvation = -3531.001251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.23495 -39.89466 -38.52974 -38.11505 -35.11334 -33.53944 -32.51411 -31.59460 -30.83144 -29.50343 -28.80725 -26.44237 -25.09986 -24.31853 -23.67860 -23.13027 -21.41916 -20.27070 -19.57787 -18.49058 -18.27938 -17.77845 -17.38528 -16.59413 -16.24455 -16.03102 -15.76675 -15.57232 -15.27549 -14.89158 -14.79952 -14.65874 -14.58801 -14.06477 -13.85689 -13.49740 -13.44625 -13.32020 -12.93037 -12.79650 -12.70120 -12.65678 -12.44771 -12.34998 -12.26200 -12.08810 -11.85089 -11.73242 -11.34343 -11.08560 -11.04241 -10.86020 -10.42260 -9.59914 -9.01133 -8.86132 -8.05467 -6.05753 0.33379 0.37855 1.38923 1.40565 1.50366 2.09190 2.30043 2.49007 2.78664 2.90952 3.29557 3.42195 3.73482 3.74212 3.83651 4.15404 4.17039 4.24448 4.28067 4.33972 4.37890 4.44139 4.48792 4.52646 4.55278 4.61355 4.68766 4.78518 4.90771 4.94171 5.00839 5.05009 5.19657 5.24472 5.26134 5.26936 5.42451 5.52097 5.54204 5.70952 5.76050 5.87748 6.00738 6.05174 6.37589 6.45567 6.53973 6.59159 7.06568 7.58067 9.06219 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.004833 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.886227 B = 5792.311241 C = 7296.218250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 N -0.527 5.527 4 C 0.065 3.935 5 C 0.057 3.943 6 H 0.076 0.924 7 C 0.030 3.970 8 O -0.316 6.316 9 C 0.025 3.975 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.113 4.113 13 C -0.140 4.140 14 C 0.032 3.968 15 O -0.309 6.309 16 C 0.094 3.906 17 H 0.060 0.940 18 C -0.177 4.177 19 C 0.030 3.970 20 C -0.476 4.476 21 H 0.050 0.950 22 C 0.004 3.996 23 N -0.937 5.937 24 Si 0.937 3.063 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.014 0.986 45 H -0.012 1.012 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 -3.107 -17.734 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 N -0.251 5.251 4 C -0.063 4.063 5 C 0.000 4.000 6 H 0.093 0.907 7 C -0.046 4.046 8 O -0.231 6.231 9 C -0.020 4.020 10 C -0.138 4.138 11 C -0.134 4.134 12 C -0.131 4.131 13 C -0.159 4.159 14 C -0.013 4.013 15 O -0.224 6.224 16 C -0.014 4.014 17 H 0.078 0.922 18 C -0.235 4.235 19 C -0.007 4.007 20 C -0.514 4.514 21 H 0.068 0.932 22 C -0.192 4.192 23 N -0.580 5.580 24 Si 0.765 3.235 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.197 1.197 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.006 0.994 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.139 -2.843 -17.762 21.701 hybrid contribution -0.629 0.151 0.790 1.021 sum 11.511 -2.693 -16.972 20.683 Atomic orbital electron populations 1.21939 0.96441 0.98962 1.02987 1.22043 0.95653 0.88809 1.00220 1.61965 1.30167 1.21706 1.11225 1.22086 0.92314 1.03096 0.88830 1.23383 0.90537 0.90701 0.95387 0.90659 1.23807 0.96044 1.05705 0.79006 1.86242 1.45019 1.62550 1.29306 1.19208 0.89223 0.99445 0.94081 1.20787 1.00499 1.01451 0.91053 1.21295 0.93548 0.97037 1.01482 1.21258 1.00712 1.00125 0.91025 1.20733 0.96093 1.01971 0.97065 1.19398 0.96549 1.02026 0.83342 1.86527 1.64719 1.53139 1.18049 1.21661 0.95314 0.97342 0.87070 0.92171 1.22430 0.99134 1.00514 1.01458 1.19240 0.92017 0.96423 0.93005 1.21304 0.96451 1.24396 1.09296 0.93197 1.25595 1.00371 0.97558 0.95660 1.70060 1.21393 1.44242 1.22258 0.85859 0.79771 0.79779 0.78088 1.20819 1.21270 1.19713 0.91808 0.94922 0.93384 0.91200 0.93418 0.90026 0.89796 0.89992 0.82847 0.83029 0.81699 0.82751 0.86045 0.92555 0.90880 0.92504 0.96785 0.99354 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 9.23 71.98 0.66 -5.39 16 2 C 0.06 2.08 4.88 86.30 0.42 2.50 16 3 N -0.53 -19.01 3.93 -870.97 -3.42 -22.43 16 4 C 0.06 1.74 3.98 86.30 0.34 2.09 16 5 C 0.06 1.55 2.97 30.75 0.09 1.64 16 6 H 0.08 2.15 6.24 -2.39 -0.01 2.13 16 7 C 0.03 0.62 6.56 72.14 0.47 1.09 16 8 O -0.32 -8.01 10.42 -82.59 -0.86 -8.87 16 9 C 0.03 0.69 6.49 22.56 0.15 0.84 16 10 C -0.12 -2.57 9.96 22.37 0.22 -2.34 16 11 C -0.12 -2.12 10.04 22.26 0.22 -1.89 16 12 C -0.11 -2.43 10.04 22.26 0.22 -2.20 16 13 C -0.14 -4.06 9.96 22.37 0.22 -3.84 16 14 C 0.03 1.01 6.49 22.56 0.15 1.16 16 15 O -0.31 -10.83 10.04 -82.85 -0.83 -11.66 16 16 C 0.09 3.66 2.33 44.92 0.10 3.77 16 17 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16 18 C -0.18 -5.35 8.62 71.98 0.62 -4.73 16 19 C 0.03 1.51 3.91 29.85 0.12 1.63 16 20 C -0.48 -26.64 6.99 25.60 0.18 -26.46 16 21 H 0.05 2.89 7.69 -2.91 -0.02 2.86 16 22 C 0.00 0.23 5.43 84.65 0.46 0.69 16 23 N -0.94 -56.84 13.29 21.45 0.28 -56.55 16 24 Si 0.94 46.49 29.54 68.60 2.03 48.52 16 25 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 28 H 0.06 3.20 4.30 -2.39 -0.01 3.19 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.04 5.84 -2.38 -0.01 2.02 16 32 H 0.05 1.61 5.22 -2.39 -0.01 1.59 16 33 H 0.08 2.22 8.02 -2.38 -0.02 2.20 16 34 H 0.08 1.71 6.91 -2.39 -0.02 1.69 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.15 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.06 1.70 5.99 -2.39 -0.01 1.69 16 42 H 0.07 1.73 6.72 -2.39 -0.02 1.72 16 43 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.01 0.75 5.25 -2.39 -0.01 0.73 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -69.73 356.04 2.83 -66.90 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.97 Total: 15.55 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.66 Total: -31.47 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.14 Total: -78.98 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.69 Total: -20.53 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -69.73 2.83 -66.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.686 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds