Wall clock time and date at job start Tue Mar 31 2020 09:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47308 * 2 1 4 4 C 1.42902 * 114.00201 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47219 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47126 * 184.23608 * 5 4 3 7 7 N 1.46495 * 109.47267 * 64.23295 * 5 4 3 8 8 C 1.34777 * 120.00307 * 155.00195 * 7 5 4 9 9 O 1.21588 * 119.99676 * 359.97438 * 8 7 5 10 10 C 1.47641 * 120.00328 * 179.97438 * 8 7 5 11 11 C 1.40014 * 119.89339 * 179.97438 * 10 8 7 12 12 C 1.36321 * 120.10231 * 180.27611 * 11 10 8 13 13 C 1.40888 * 119.89113 * 359.50037 * 12 11 10 14 14 C 1.41110 * 120.10017 * 180.22634 * 13 12 11 15 15 H 1.08002 * 119.99923 * 205.36347 * 14 13 12 16 16 C 1.40229 * 120.00037 * 25.37316 * 14 13 12 17 17 N 1.30643 * 120.00031 * 15.09900 * 16 14 13 18 18 Si 1.86797 * 119.99775 * 195.09418 * 16 14 13 19 19 H 1.48507 * 109.47021 * 90.00320 * 18 16 14 20 20 H 1.48500 * 109.47061 * 210.00000 * 18 16 14 21 21 H 1.48502 * 109.47462 * 330.00298 * 18 16 14 22 22 C 1.40884 * 119.79599 * 0.50041 * 13 12 11 23 23 C 1.36320 * 119.88701 * 359.75080 * 22 13 12 24 24 C 1.53006 * 109.47122 * 304.23294 * 5 4 3 25 25 C 1.52996 * 109.47389 * 184.07085 * 24 5 4 26 26 C 1.53005 * 109.47212 * 304.07239 * 24 5 4 27 27 H 1.09003 * 109.46863 * 59.99540 * 1 2 3 28 28 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47153 * 299.99876 * 1 2 3 30 30 H 1.08997 * 109.47794 * 239.99927 * 2 1 3 31 31 H 1.09005 * 109.46960 * 119.99926 * 2 1 3 32 32 H 1.09001 * 109.46814 * 60.00435 * 4 3 2 33 33 H 1.09003 * 109.47151 * 300.00556 * 4 3 2 34 34 H 0.96996 * 119.99989 * 334.99977 * 7 5 4 35 35 H 1.07995 * 119.94994 * 0.02562 * 11 10 8 36 36 H 1.07998 * 120.05041 * 179.74687 * 12 11 10 37 37 H 0.96998 * 120.00060 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.06075 * 179.72757 * 22 13 12 39 39 H 1.08001 * 119.94202 * 179.97438 * 23 22 13 40 40 H 1.08998 * 109.46949 * 64.07125 * 24 5 4 41 41 H 1.09005 * 109.47079 * 53.62203 * 25 24 5 42 42 H 1.09001 * 109.47310 * 173.61985 * 25 24 5 43 43 H 1.09001 * 109.47234 * 293.62332 * 25 24 5 44 44 H 1.08997 * 109.46944 * 59.99357 * 26 24 5 45 45 H 1.08994 * 109.47145 * 180.02562 * 26 24 5 46 46 H 1.09004 * 109.46995 * 300.00235 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 4.9094 3.0251 -0.0743 7 7 3.3708 3.5646 1.2450 8 6 3.9961 4.6623 1.7146 9 8 4.9379 5.1325 1.1061 10 6 3.5375 5.2938 2.9679 11 6 4.1892 6.4338 3.4540 12 6 3.7729 7.0170 4.6137 13 6 2.6785 6.4771 5.3177 14 6 2.2408 7.0801 6.5161 15 1 1.7161 6.4934 7.2555 16 6 2.4871 8.4412 6.7467 17 7 2.8472 9.2165 5.7588 18 14 2.3002 9.1457 8.4666 19 1 3.5952 9.0444 9.1865 20 1 1.8944 10.5713 8.3761 21 1 1.2626 8.3815 9.2046 22 6 2.0260 5.3299 4.8246 23 6 2.4528 4.7506 3.6668 24 6 3.1733 3.6407 -1.1915 25 6 3.6481 5.0940 -1.2496 26 6 3.5679 2.9233 -2.4841 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9766 0.8908 34 1 2.6196 3.1893 1.7306 35 1 5.0254 6.8493 2.9115 36 1 4.2787 7.8939 4.9900 37 1 3.0179 10.1579 5.9184 38 1 1.1894 4.9099 5.3632 39 1 1.9535 3.8709 3.2882 40 1 2.0894 3.6168 -1.0790 41 1 4.7378 5.1206 -1.2479 42 1 3.2747 5.5621 -2.1603 43 1 3.2701 5.6346 -0.3818 44 1 3.2297 1.8879 -2.4427 45 1 3.1037 3.4239 -3.3337 46 1 4.6518 2.9471 -2.5965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276410572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:18 Heat of formation + Delta-G solvation = -87.787814 kcal Electronic energy + Delta-G solvation = -25160.650670 eV Core-core repulsion = 21628.150325 eV Total energy + Delta-G solvation = -3532.500345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.67230 -38.22075 -37.13981 -35.73236 -33.85033 -32.88629 -31.51993 -30.08776 -29.51055 -28.31904 -26.81941 -25.65198 -23.16391 -22.95301 -21.87716 -20.84886 -19.72441 -19.59450 -17.50544 -16.86128 -16.70282 -16.37323 -15.58561 -15.34013 -14.84334 -14.68914 -14.07150 -13.92169 -13.67306 -13.22451 -12.93062 -12.86671 -12.74413 -12.67700 -12.31449 -12.19494 -11.94945 -11.80877 -11.69213 -11.61276 -11.37943 -11.33622 -11.22046 -10.94943 -10.88340 -10.60090 -10.46499 -10.42477 -9.99184 -9.71196 -9.48995 -9.32250 -8.86910 -8.43365 -7.65248 -7.50454 -6.95532 -4.56880 2.28750 2.94701 2.98234 3.00814 3.07566 3.50313 3.77622 3.87471 3.94305 4.61953 4.75721 4.85295 4.93515 5.07054 5.16463 5.21512 5.27690 5.36103 5.45832 5.49094 5.62111 5.69712 5.72760 5.83920 5.94011 6.02846 6.04646 6.09076 6.13762 6.20097 6.31562 6.33471 6.60420 6.81533 6.84925 6.88598 7.00897 7.10782 7.12566 7.18119 7.48576 7.66685 7.85262 7.92673 8.10488 8.35108 8.48322 8.67773 8.80141 9.16737 9.95572 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.003147 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.760229 B = 8895.581599 C = 9875.984938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.053 3.947 5 C 0.158 3.842 6 H 0.095 0.905 7 N -0.733 5.733 8 C 0.572 3.428 9 O -0.569 6.569 10 C -0.280 4.280 11 C -0.037 4.037 12 C -0.182 4.182 13 C 0.128 3.872 14 C -0.445 4.445 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.773 5.773 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.235 4.235 23 C -0.050 4.050 24 C -0.101 4.101 25 C -0.138 4.138 26 C -0.143 4.143 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.400 0.600 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.286 0.714 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -13.193 -9.302 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.024 4.024 5 C 0.052 3.948 6 H 0.112 0.888 7 N -0.386 5.386 8 C 0.366 3.634 9 O -0.451 6.451 10 C -0.285 4.285 11 C -0.057 4.057 12 C -0.201 4.201 13 C 0.125 3.875 14 C -0.473 4.473 15 H 0.101 0.899 16 C -0.148 4.148 17 N -0.397 5.397 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.254 4.254 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.195 4.195 26 C -0.201 4.201 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.318 -12.451 -9.793 15.896 hybrid contribution -0.396 -0.062 0.916 1.000 sum -1.714 -12.513 -8.877 15.438 Atomic orbital electron populations 1.21736 0.93770 1.02032 1.03336 1.22439 0.95625 0.84068 0.99825 1.87936 1.20721 1.25996 1.95352 1.22887 0.81825 0.97010 1.00691 1.20959 0.99497 0.89104 0.85199 0.88762 1.45897 1.36747 1.30811 1.25117 1.18536 0.81421 0.78746 0.84659 1.90634 1.29845 1.63952 1.60643 1.18956 1.06069 1.03932 0.99531 1.20490 0.97031 0.93045 0.95084 1.21073 0.99014 1.02883 0.97114 1.17788 0.88693 0.89736 0.91326 1.19834 1.30878 0.94049 1.02517 0.89861 1.26093 0.92412 0.97343 0.98974 1.69739 1.30675 1.06763 1.32498 0.86197 0.79926 0.78397 0.81633 1.18987 1.20037 1.18367 1.20676 1.03429 1.02375 0.98952 1.20382 0.94714 0.96823 0.94980 1.21433 1.01049 0.95871 0.93718 1.21851 1.01909 0.94956 1.00783 1.21854 1.01106 0.99996 0.97164 0.91892 0.91346 0.91634 0.93695 0.93505 0.92001 0.92845 0.76493 0.88213 0.85971 0.90262 0.88592 0.89264 0.90575 0.91993 0.94164 0.92253 0.92841 0.92815 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.15 0.38 -0.84 16 2 C 0.06 0.51 6.66 37.15 0.25 0.76 16 3 O -0.38 -4.44 9.27 -35.23 -0.33 -4.76 16 4 C 0.05 0.59 5.07 37.15 0.19 0.78 16 5 C 0.16 2.23 2.24 -67.93 -0.15 2.08 16 6 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 7 N -0.73 -12.30 4.96 -54.81 -0.27 -12.58 16 8 C 0.57 11.97 6.35 -12.42 -0.08 11.89 16 9 O -0.57 -13.03 13.34 5.29 0.07 -12.96 16 10 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 11 C -0.04 -0.92 9.52 -39.61 -0.38 -1.29 16 12 C -0.18 -4.69 8.63 -39.27 -0.34 -5.03 16 13 C 0.13 3.29 5.58 -106.80 -0.60 2.70 16 14 C -0.44 -11.20 9.06 -37.75 -0.34 -11.55 16 15 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 16 C 0.07 1.73 5.19 -17.31 -0.09 1.64 16 17 N -0.77 -19.17 10.84 55.56 0.60 -18.56 16 18 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 22 C -0.23 -5.51 9.73 -39.27 -0.38 -5.90 16 23 C -0.05 -1.08 9.47 -39.61 -0.38 -1.46 16 24 C -0.10 -1.39 2.45 -90.62 -0.22 -1.61 16 25 C -0.14 -2.21 7.66 37.16 0.28 -1.93 16 26 C -0.14 -1.57 8.73 37.16 0.32 -1.24 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.57 6.61 -51.93 -0.34 0.23 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.40 6.33 6.36 -40.82 -0.26 6.07 16 35 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 36 H 0.12 3.23 6.10 -52.49 -0.32 2.91 16 37 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 38 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 40 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 41 H 0.06 1.06 7.41 -51.93 -0.38 0.67 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.14 6.25 -51.93 -0.32 0.81 16 44 H 0.05 0.52 6.45 -51.93 -0.34 0.19 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -27.98 367.82 -8.83 -36.81 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.27 Total: 11.96 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.14 Total: -18.07 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.33 Total: -31.14 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.26 Total: -17.73 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.98 -8.83 -36.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276410572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.980 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds