Wall clock time and date at job start Tue Mar 31 2020 09:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47308 * 2 1 4 4 C 1.42902 * 114.00201 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47219 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47126 * 184.23608 * 5 4 3 7 7 N 1.46495 * 109.47267 * 64.23295 * 5 4 3 8 8 C 1.34777 * 120.00307 * 155.00195 * 7 5 4 9 9 O 1.21588 * 119.99676 * 359.97438 * 8 7 5 10 10 C 1.47641 * 120.00328 * 179.97438 * 8 7 5 11 11 C 1.40014 * 119.89339 * 179.97438 * 10 8 7 12 12 C 1.36321 * 120.10231 * 180.27611 * 11 10 8 13 13 C 1.40888 * 119.89113 * 359.50037 * 12 11 10 14 14 C 1.41110 * 120.10017 * 180.22634 * 13 12 11 15 15 H 1.08002 * 119.99923 * 205.36347 * 14 13 12 16 16 C 1.40229 * 120.00037 * 25.37316 * 14 13 12 17 17 N 1.30643 * 120.00031 * 15.09900 * 16 14 13 18 18 Si 1.86797 * 119.99775 * 195.09418 * 16 14 13 19 19 H 1.48507 * 109.47021 * 90.00320 * 18 16 14 20 20 H 1.48500 * 109.47061 * 210.00000 * 18 16 14 21 21 H 1.48502 * 109.47462 * 330.00298 * 18 16 14 22 22 C 1.40884 * 119.79599 * 0.50041 * 13 12 11 23 23 C 1.36320 * 119.88701 * 359.75080 * 22 13 12 24 24 C 1.53006 * 109.47122 * 304.23294 * 5 4 3 25 25 C 1.52996 * 109.47389 * 184.07085 * 24 5 4 26 26 C 1.53005 * 109.47212 * 304.07239 * 24 5 4 27 27 H 1.09003 * 109.46863 * 59.99540 * 1 2 3 28 28 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47153 * 299.99876 * 1 2 3 30 30 H 1.08997 * 109.47794 * 239.99927 * 2 1 3 31 31 H 1.09005 * 109.46960 * 119.99926 * 2 1 3 32 32 H 1.09001 * 109.46814 * 60.00435 * 4 3 2 33 33 H 1.09003 * 109.47151 * 300.00556 * 4 3 2 34 34 H 0.96996 * 119.99989 * 334.99977 * 7 5 4 35 35 H 1.07995 * 119.94994 * 0.02562 * 11 10 8 36 36 H 1.07998 * 120.05041 * 179.74687 * 12 11 10 37 37 H 0.96998 * 120.00060 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.06075 * 179.72757 * 22 13 12 39 39 H 1.08001 * 119.94202 * 179.97438 * 23 22 13 40 40 H 1.08998 * 109.46949 * 64.07125 * 24 5 4 41 41 H 1.09005 * 109.47079 * 53.62203 * 25 24 5 42 42 H 1.09001 * 109.47310 * 173.61985 * 25 24 5 43 43 H 1.09001 * 109.47234 * 293.62332 * 25 24 5 44 44 H 1.08997 * 109.46944 * 59.99357 * 26 24 5 45 45 H 1.08994 * 109.47145 * 180.02562 * 26 24 5 46 46 H 1.09004 * 109.46995 * 300.00235 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 4.9094 3.0251 -0.0743 7 7 3.3708 3.5646 1.2450 8 6 3.9961 4.6623 1.7146 9 8 4.9379 5.1325 1.1061 10 6 3.5375 5.2938 2.9679 11 6 4.1892 6.4338 3.4540 12 6 3.7729 7.0170 4.6137 13 6 2.6785 6.4771 5.3177 14 6 2.2408 7.0801 6.5161 15 1 1.7161 6.4934 7.2555 16 6 2.4871 8.4412 6.7467 17 7 2.8472 9.2165 5.7588 18 14 2.3002 9.1457 8.4666 19 1 3.5952 9.0444 9.1865 20 1 1.8944 10.5713 8.3761 21 1 1.2626 8.3815 9.2046 22 6 2.0260 5.3299 4.8246 23 6 2.4528 4.7506 3.6668 24 6 3.1733 3.6407 -1.1915 25 6 3.6481 5.0940 -1.2496 26 6 3.5679 2.9233 -2.4841 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9766 0.8908 34 1 2.6196 3.1893 1.7306 35 1 5.0254 6.8493 2.9115 36 1 4.2787 7.8939 4.9900 37 1 3.0179 10.1579 5.9184 38 1 1.1894 4.9099 5.3632 39 1 1.9535 3.8709 3.2882 40 1 2.0894 3.6168 -1.0790 41 1 4.7378 5.1206 -1.2479 42 1 3.2747 5.5621 -2.1603 43 1 3.2701 5.6346 -0.3818 44 1 3.2297 1.8879 -2.4427 45 1 3.1037 3.4239 -3.3337 46 1 4.6518 2.9471 -2.5965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276410572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:17 Heat of formation + Delta-G solvation = -102.958838 kcal Electronic energy + Delta-G solvation = -25161.308535 eV Core-core repulsion = 21628.150325 eV Total energy + Delta-G solvation = -3533.158210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11595 -39.50337 -38.69852 -36.96330 -35.67387 -34.29042 -32.32033 -31.88675 -31.30313 -29.48514 -28.07657 -27.24813 -24.38331 -23.62399 -23.52862 -22.67072 -21.26364 -20.89332 -19.35350 -18.43725 -17.75026 -17.27308 -17.09328 -16.68170 -16.10165 -15.80293 -15.70238 -15.61915 -14.99504 -14.71018 -14.48298 -14.03720 -13.93900 -13.81966 -13.68173 -13.53843 -13.29481 -13.19625 -13.01815 -12.83745 -12.69892 -12.56925 -12.42539 -12.34053 -12.12270 -11.97199 -11.75456 -11.59379 -11.54061 -11.33941 -11.13989 -10.60139 -10.45947 -9.87884 -9.55728 -9.37902 -8.75589 -6.48213 0.47300 1.15664 1.38143 1.43695 1.53256 2.14542 2.20048 2.41975 2.76661 2.84317 3.69968 3.73440 3.92721 4.13584 4.23633 4.28026 4.31986 4.36446 4.41070 4.43487 4.50498 4.51381 4.58146 4.70990 4.81556 4.85564 4.94464 4.98111 5.02676 5.04214 5.08952 5.10944 5.22053 5.24946 5.27586 5.33712 5.43524 5.51278 5.59926 5.72946 5.80365 5.98774 6.03040 6.21832 6.30430 6.57526 6.78181 6.80203 6.91008 7.54277 8.18693 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.003147 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.760229 B = 8895.581599 C = 9875.984938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.400 6.400 4 C 0.061 3.939 5 C 0.152 3.848 6 H 0.084 0.916 7 N -0.717 5.717 8 C 0.573 3.427 9 O -0.594 6.594 10 C -0.290 4.290 11 C -0.050 4.050 12 C -0.202 4.202 13 C 0.100 3.900 14 C -0.474 4.474 15 H 0.091 0.909 16 C 0.032 3.968 17 N -0.808 5.808 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.252 1.252 22 C -0.246 4.246 23 C -0.040 4.040 24 C -0.095 4.095 25 C -0.132 4.132 26 C -0.136 4.136 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.406 0.594 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.294 0.706 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -15.442 -9.744 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.320 6.320 4 C -0.016 4.016 5 C 0.047 3.953 6 H 0.102 0.898 7 N -0.368 5.368 8 C 0.366 3.634 9 O -0.477 6.477 10 C -0.294 4.294 11 C -0.070 4.070 12 C -0.221 4.221 13 C 0.097 3.903 14 C -0.502 4.502 15 H 0.109 0.891 16 C -0.186 4.186 17 N -0.432 5.432 18 Si 0.811 3.189 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.175 1.175 22 C -0.265 4.265 23 C -0.059 4.059 24 C -0.115 4.115 25 C -0.190 4.190 26 C -0.194 4.194 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.404 -14.745 -10.262 18.125 hybrid contribution -0.070 0.583 0.932 1.101 sum -2.473 -14.163 -9.330 17.139 Atomic orbital electron populations 1.21758 0.93419 1.03125 1.02496 1.22631 0.95927 0.82908 1.00989 1.87909 1.20661 1.27871 1.95574 1.22787 0.82104 0.94393 1.02300 1.21184 0.99018 0.91227 0.83826 0.89800 1.45760 1.35994 1.29248 1.25831 1.18272 0.81408 0.79671 0.84040 1.90620 1.31045 1.64929 1.61134 1.19272 1.06176 1.03427 1.00547 1.20553 0.97301 0.94085 0.95015 1.21000 0.99926 1.03104 0.98077 1.18142 0.89065 0.91001 0.92078 1.20147 1.32040 0.95137 1.02863 0.89132 1.27023 0.91386 0.97180 1.03031 1.69799 1.31151 1.07461 1.34772 0.85061 0.80029 0.77782 0.76064 1.18608 1.19198 1.17486 1.20937 1.03885 1.01984 0.99702 1.20672 0.93822 0.97416 0.93959 1.21373 1.00404 0.94467 0.95242 1.21778 1.00783 0.96645 0.99781 1.21796 1.01542 1.00633 0.95412 0.92368 0.89335 0.92812 0.91984 0.92829 0.89363 0.92250 0.75726 0.89002 0.87617 0.89490 0.86819 0.85432 0.91212 0.93467 0.92647 0.95938 0.91022 0.92051 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.40 -8.14 9.27 -148.98 -1.38 -9.52 16 4 C 0.06 1.17 5.07 71.98 0.37 1.54 16 5 C 0.15 4.05 2.24 44.99 0.10 4.15 16 6 H 0.08 2.46 7.58 -2.38 -0.02 2.44 16 7 N -0.72 -23.32 4.96 -445.60 -2.21 -25.53 16 8 C 0.57 24.17 6.35 86.73 0.55 24.72 16 9 O -0.59 -27.88 13.34 -3.99 -0.05 -27.94 16 10 C -0.29 -13.52 5.89 -19.94 -0.12 -13.63 16 11 C -0.05 -2.59 9.52 22.25 0.21 -2.38 16 12 C -0.20 -10.94 8.63 22.47 0.19 -10.75 16 13 C 0.10 5.31 5.58 -21.28 -0.12 5.19 16 14 C -0.47 -24.34 9.06 23.46 0.21 -24.12 16 15 H 0.09 4.35 7.89 -2.91 -0.02 4.32 16 16 C 0.03 1.53 5.19 85.35 0.44 1.97 16 17 N -0.81 -41.25 10.84 21.87 0.24 -41.02 16 18 Si 0.99 36.09 29.59 68.60 2.03 38.12 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 21 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 22 C -0.25 -11.53 9.73 22.47 0.22 -11.31 16 23 C -0.04 -1.71 9.47 22.25 0.21 -1.49 16 24 C -0.10 -2.47 2.45 -10.79 -0.03 -2.50 16 25 C -0.13 -4.26 7.66 71.98 0.55 -3.71 16 26 C -0.14 -2.58 8.73 71.98 0.63 -1.95 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 32 H 0.09 1.27 6.61 -2.39 -0.02 1.25 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.41 12.09 6.36 -92.71 -0.59 11.51 16 35 H 0.09 4.76 7.63 -2.91 -0.02 4.73 16 36 H 0.11 5.96 6.10 -2.91 -0.02 5.94 16 37 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16 38 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 39 H 0.13 4.37 6.37 -2.91 -0.02 4.35 16 40 H 0.07 1.93 7.71 -2.39 -0.02 1.91 16 41 H 0.05 1.63 7.41 -2.38 -0.02 1.61 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.02 0.86 6.25 -2.39 -0.01 0.84 16 44 H 0.07 1.12 6.45 -2.39 -0.02 1.10 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -63.06 367.82 3.65 -59.41 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: 0.38 Total: 40.84 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 4.64 Total: -34.37 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.97 Total: -66.55 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.43 Total: -37.45 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -63.06 3.65 -59.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276410572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.550 kcal (2) G-P(sol) polarization free energy of solvation -63.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds