Wall clock time and date at job start Tue Mar 31 2020 09:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.46790 * 2 1 4 4 C 1.42902 * 113.99834 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46952 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46684 * 174.90538 * 5 4 3 7 7 N 1.46501 * 109.47281 * 294.90844 * 5 4 3 8 8 C 1.34770 * 119.99699 * 205.00288 * 7 5 4 9 9 O 1.21582 * 120.00384 * 359.97438 * 8 7 5 10 10 C 1.47644 * 120.00095 * 180.02562 * 8 7 5 11 11 C 1.40017 * 119.89029 * 359.72368 * 10 8 7 12 12 C 1.36316 * 120.10383 * 179.71471 * 11 10 8 13 13 C 1.40892 * 119.89262 * 0.58162 * 12 11 10 14 14 C 1.41113 * 120.10355 * 179.67311 * 13 12 11 15 15 H 1.07998 * 119.99846 * 206.10292 * 14 13 12 16 16 C 1.40217 * 120.00187 * 26.10523 * 14 13 12 17 17 N 1.30654 * 119.99806 * 13.53657 * 16 14 13 18 18 Si 1.86801 * 120.00370 * 193.53198 * 16 14 13 19 19 H 1.48504 * 109.46743 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46948 * 119.99691 * 18 16 14 21 21 H 1.48496 * 109.47391 * 240.00139 * 18 16 14 22 22 C 1.40887 * 119.79067 * 359.69575 * 13 12 11 23 23 C 1.36315 * 119.89184 * 359.97438 * 22 13 12 24 24 C 1.53002 * 109.47038 * 54.90899 * 5 4 3 25 25 C 1.52996 * 109.46817 * 178.78330 * 24 5 4 26 26 C 1.53005 * 109.47014 * 58.78434 * 24 5 4 27 27 H 1.09005 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47169 * 299.99824 * 1 2 3 29 29 H 1.09000 * 109.47408 * 60.00271 * 1 2 3 30 30 H 1.08991 * 109.47084 * 240.00103 * 2 1 3 31 31 H 1.08996 * 109.46752 * 119.99439 * 2 1 3 32 32 H 1.08995 * 109.46979 * 60.00427 * 4 3 2 33 33 H 1.08994 * 109.47263 * 299.99680 * 4 3 2 34 34 H 0.97001 * 119.99743 * 24.99639 * 7 5 4 35 35 H 1.08000 * 119.95000 * 0.02562 * 11 10 8 36 36 H 1.08003 * 120.05299 * 180.25414 * 12 11 10 37 37 H 0.97005 * 119.99667 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.05348 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.94167 * 179.97438 * 23 22 13 40 40 H 1.08996 * 109.47282 * 298.78743 * 24 5 4 41 41 H 1.09004 * 109.47437 * 300.00008 * 25 24 5 42 42 H 1.09005 * 109.47131 * 179.97438 * 25 24 5 43 43 H 1.08997 * 109.47214 * 60.00308 * 25 24 5 44 44 H 1.09000 * 109.46939 * 173.26772 * 26 24 5 45 45 H 1.09000 * 109.47286 * 293.27120 * 26 24 5 46 46 H 1.08996 * 109.47029 * 53.26846 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 4.9080 3.0256 0.0916 7 7 3.3897 3.5596 -1.2534 8 6 4.0222 4.6552 -1.7179 9 8 4.9540 5.1285 -1.0966 10 6 3.5829 5.2816 -2.9807 11 6 2.5127 4.7319 -3.6968 12 6 2.0997 5.3100 -4.8602 13 6 2.7596 6.4553 -5.3481 14 6 2.3403 7.0533 -6.5555 15 1 3.0403 7.6253 -7.1463 16 6 1.0148 6.9049 -6.9881 17 7 0.1067 6.4495 -6.1665 18 14 0.5473 7.3583 -8.7389 19 1 1.7496 7.8452 -9.4619 20 1 0.0042 6.1623 -9.4317 21 1 -0.4833 8.4272 -8.7150 22 6 3.8398 7.0012 -4.6269 23 6 4.2412 6.4201 -3.4610 24 6 3.1550 3.6457 1.1795 25 6 3.5735 5.1172 1.1965 26 6 3.5864 2.9777 2.4866 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8340 0.9766 -0.8892 33 1 3.8333 0.9768 0.8908 34 1 2.6461 3.1821 -1.7489 35 1 2.0102 3.8515 -3.3243 36 1 1.2714 4.8878 -5.4098 37 1 -0.8102 6.3465 -6.4659 38 1 4.3489 7.8787 -4.9972 39 1 5.0694 6.8377 -2.9077 40 1 2.0721 3.5771 1.0766 41 1 4.6565 5.1859 1.2994 42 1 3.0956 5.6212 2.0366 43 1 3.2662 5.5931 0.2653 44 1 3.2063 3.5525 3.3311 45 1 3.1855 1.9648 2.5266 46 1 4.6747 2.9397 2.5333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276410590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:22 Heat of formation + Delta-G solvation = -102.150388 kcal Electronic energy + Delta-G solvation = -25245.561006 eV Core-core repulsion = 21712.437853 eV Total energy + Delta-G solvation = -3533.123153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13705 -39.50179 -38.70886 -36.96345 -35.63679 -34.31474 -32.37377 -31.83086 -31.27782 -29.52466 -28.06212 -27.25765 -24.40786 -23.64154 -23.42933 -22.74366 -21.25727 -20.90166 -19.35469 -18.38272 -17.78060 -17.32114 -17.10158 -16.63176 -16.16104 -15.85806 -15.69581 -15.58667 -14.99435 -14.68044 -14.51246 -14.01385 -13.94884 -13.78698 -13.64885 -13.56141 -13.34731 -13.17877 -13.00212 -12.83812 -12.67605 -12.58606 -12.43683 -12.36648 -12.13629 -11.97095 -11.73265 -11.59483 -11.54292 -11.35247 -11.14702 -10.60355 -10.47158 -9.88357 -9.56247 -9.36167 -8.74592 -6.48520 0.46569 1.15311 1.39250 1.42254 1.55296 2.15544 2.20061 2.42454 2.75724 2.84043 3.69631 3.72874 3.92559 4.13950 4.22180 4.27608 4.30010 4.35158 4.41049 4.46464 4.49435 4.50630 4.56457 4.70415 4.81458 4.85501 4.92925 4.94208 5.03988 5.04765 5.08098 5.09304 5.17574 5.23903 5.31546 5.31977 5.43580 5.51956 5.59750 5.72397 5.84499 5.97136 6.00757 6.24064 6.29566 6.55972 6.77448 6.79432 6.90307 7.52880 8.19641 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.003481 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.627339 B = 8040.720425 C = 9322.055626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.401 6.401 4 C 0.061 3.939 5 C 0.152 3.848 6 H 0.086 0.914 7 N -0.719 5.719 8 C 0.574 3.426 9 O -0.591 6.591 10 C -0.289 4.289 11 C -0.057 4.057 12 C -0.195 4.195 13 C 0.101 3.899 14 C -0.476 4.476 15 H 0.084 0.916 16 C 0.036 3.964 17 N -0.805 5.805 18 Si 0.989 3.011 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.264 1.264 22 C -0.252 4.252 23 C -0.034 4.034 24 C -0.096 4.096 25 C -0.133 4.133 26 C -0.135 4.135 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.405 0.595 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.295 0.705 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -13.203 10.208 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.321 6.321 4 C -0.016 4.016 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.370 5.370 8 C 0.368 3.632 9 O -0.475 6.475 10 C -0.293 4.293 11 C -0.076 4.076 12 C -0.214 4.214 13 C 0.098 3.902 14 C -0.504 4.504 15 H 0.102 0.898 16 C -0.182 4.182 17 N -0.429 5.429 18 Si 0.809 3.191 19 H -0.181 1.181 20 H -0.185 1.185 21 H -0.189 1.189 22 C -0.271 4.271 23 C -0.053 4.053 24 C -0.116 4.116 25 C -0.191 4.191 26 C -0.193 4.193 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.241 0.759 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.634 -12.800 10.691 16.690 hybrid contribution -0.425 0.254 -1.025 1.138 sum -1.059 -12.547 9.665 15.873 Atomic orbital electron populations 1.21762 0.93498 1.03132 1.02430 1.22626 0.95880 0.82925 1.00995 1.87912 1.20764 1.27865 1.95573 1.22781 0.82034 0.94519 1.02265 1.21195 0.99178 0.91217 0.83635 0.89588 1.45808 1.36617 1.29529 1.25034 1.18229 0.81204 0.79598 0.84205 1.90617 1.31501 1.64616 1.60792 1.19290 1.05774 1.04175 1.00092 1.20725 0.94382 0.97940 0.94508 1.21071 1.03710 0.97818 0.98810 1.18144 0.90131 0.90054 0.91903 1.20125 0.96495 1.28501 1.05250 0.89797 1.26925 0.95527 0.92294 1.03486 1.69769 1.03845 1.31872 1.37457 0.85041 0.79121 0.79105 0.75812 1.18056 1.18454 1.18908 1.20883 1.04657 1.03335 0.98239 1.20499 0.96575 0.93638 0.94564 1.21374 1.00436 0.94521 0.95244 1.21797 1.00815 0.96497 0.99966 1.21770 1.01458 1.00801 0.95262 0.89268 0.92310 0.93030 0.92914 0.91835 0.92341 0.89350 0.75906 0.86486 0.86710 0.89375 0.87818 0.87798 0.91274 0.93371 0.92826 0.95585 0.92075 0.91203 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.82 6.66 71.98 0.48 1.30 16 3 O -0.40 -8.70 9.22 -148.98 -1.37 -10.08 16 4 C 0.06 1.22 5.14 71.98 0.37 1.59 16 5 C 0.15 4.12 2.24 44.99 0.10 4.22 16 6 H 0.09 2.52 7.58 -2.38 -0.02 2.50 16 7 N -0.72 -24.01 4.91 -445.58 -2.19 -26.20 16 8 C 0.57 24.13 6.17 86.73 0.53 24.67 16 9 O -0.59 -27.09 13.44 -3.97 -0.05 -27.14 16 10 C -0.29 -13.44 5.89 -19.93 -0.12 -13.56 16 11 C -0.06 -2.57 9.47 22.25 0.21 -2.36 16 12 C -0.19 -9.89 8.62 22.47 0.19 -9.70 16 13 C 0.10 5.35 5.57 -21.28 -0.12 5.23 16 14 C -0.48 -24.54 9.06 23.46 0.21 -24.33 16 15 H 0.08 4.16 7.89 -2.91 -0.02 4.13 16 16 C 0.04 1.68 5.22 85.35 0.45 2.13 16 17 N -0.81 -39.40 10.80 21.87 0.24 -39.17 16 18 Si 0.99 35.54 29.58 68.60 2.03 37.57 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 22 C -0.25 -12.72 9.73 22.47 0.22 -12.51 16 23 C -0.03 -1.64 9.52 22.25 0.21 -1.42 16 24 C -0.10 -2.53 2.48 -10.79 -0.03 -2.56 16 25 C -0.13 -4.27 7.73 71.98 0.56 -3.72 16 26 C -0.14 -2.61 8.61 71.98 0.62 -1.99 16 27 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.33 6.85 -2.39 -0.02 1.31 16 34 H 0.40 12.85 6.39 -92.71 -0.59 12.25 16 35 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 36 H 0.12 5.94 6.10 -2.91 -0.02 5.92 16 37 H 0.30 12.82 8.29 -92.70 -0.77 12.05 16 38 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 39 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 40 H 0.07 1.96 7.60 -2.39 -0.02 1.94 16 41 H 0.05 1.62 7.61 -2.38 -0.02 1.60 16 42 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.02 1.00 5.74 -2.39 -0.01 0.98 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.12 6.91 -2.39 -0.02 1.11 16 46 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -61.13 367.95 3.66 -57.47 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: 0.38 Total: 42.09 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 4.63 Total: -34.55 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -1.95 Total: -65.37 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.43 Total: -37.22 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -61.13 3.66 -57.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276410590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.681 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds