Wall clock time and date at job start Tue Mar 31 2020 10:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35997 * 117.00206 * 2 1 4 4 C 1.38439 * 120.10748 * 0.02562 * 3 2 1 5 5 C 1.38504 * 120.24252 * 179.97438 * 4 3 2 6 6 C 1.38512 * 119.94267 * 359.97438 * 5 4 3 7 7 C 1.38315 * 119.94149 * 0.04584 * 6 5 4 8 8 C 1.38446 * 120.30796 * 359.93488 * 7 6 5 9 9 O 1.35997 * 120.10593 * 180.02562 * 8 7 6 10 10 C 1.42896 * 117.00229 * 359.97333 * 9 8 7 11 11 C 1.51389 * 109.61440 * 179.97438 * 6 5 4 12 12 H 1.09003 * 110.30450 * 136.22137 * 11 6 5 13 13 N 1.46906 * 110.30260 * 258.27288 * 11 6 5 14 14 C 1.46899 * 110.99904 * 272.22629 * 13 11 6 15 15 C 1.52996 * 109.46973 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47328 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47457 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00087 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00308 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 60.00735 * 21 19 17 23 23 H 1.48503 * 109.47399 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00832 * 21 19 17 25 25 C 1.54340 * 105.26208 * 17.24705 * 11 6 5 26 26 C 1.51396 * 130.27904 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47391 * 299.99760 * 1 2 3 28 28 H 1.09006 * 109.46867 * 60.00194 * 1 2 3 29 29 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.88117 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.81422 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.46961 * 60.00218 * 10 9 8 33 33 H 1.09000 * 109.47130 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47361 * 300.00290 * 10 9 8 35 35 H 1.00901 * 110.99468 * 36.17763 * 13 11 6 36 36 H 1.09001 * 109.47354 * 59.99669 * 14 13 11 37 37 H 1.09000 * 109.47162 * 299.99651 * 14 13 11 38 38 H 1.09001 * 109.47372 * 59.99654 * 15 14 13 39 39 H 1.09000 * 109.46870 * 299.99804 * 15 14 13 40 40 H 1.09001 * 109.47194 * 59.99524 * 16 15 14 41 41 H 1.09004 * 109.46724 * 300.00183 * 16 15 14 42 42 H 0.97000 * 119.99806 * 0.02562 * 20 19 17 43 43 H 1.08992 * 110.82128 * 91.79309 * 25 11 6 44 44 H 1.09000 * 110.82267 * 215.14975 * 25 11 6 45 45 H 1.09000 * 110.30558 * 43.87215 * 26 5 4 46 46 H 1.09003 * 110.38793 * 281.75724 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2947 2.3742 0.0005 5 6 1.9206 3.6097 0.0011 6 6 3.3037 3.6841 0.0016 7 6 4.0574 2.5243 0.0007 8 6 3.4359 1.2872 0.0005 9 8 4.1809 0.1494 0.0001 10 6 5.6015 0.3042 -0.0008 11 6 3.7347 5.1353 0.0015 12 1 4.5497 5.2879 0.7091 13 7 4.1488 5.5440 -1.3475 14 6 5.5727 5.2595 -1.5698 15 6 5.9660 5.6984 -2.9817 16 6 7.4489 5.4016 -3.2136 17 6 7.8362 5.8333 -4.6045 18 1 7.0985 6.2755 -5.2577 19 6 9.1324 5.6646 -5.0429 20 7 10.0309 5.1265 -4.2474 21 14 9.6126 6.2003 -6.7668 22 1 9.3697 7.6575 -6.9179 23 1 11.0519 5.9121 -6.9919 24 1 8.7979 5.4569 -7.7611 25 6 2.4870 5.9297 0.4423 26 6 1.3326 5.0049 0.0022 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2161 2.3175 0.0005 31 1 5.1357 2.5846 0.0007 32 1 5.9076 0.8544 0.8891 33 1 6.0740 -0.6781 -0.0015 34 1 5.9065 0.8543 -0.8909 35 1 3.5773 5.1005 -2.0509 36 1 5.7514 4.1901 -1.4583 37 1 6.1706 5.8058 -0.8402 38 1 5.7874 6.7679 -3.0928 39 1 5.3681 5.1525 -3.7116 40 1 7.6271 4.3320 -3.1027 41 1 8.0470 5.9471 -2.4837 42 1 9.7814 4.8480 -3.3523 43 1 2.4792 6.0705 1.5230 44 1 2.4368 6.8892 -0.0723 45 1 0.5069 5.0667 0.7111 46 1 0.9928 5.2746 -0.9978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280003252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:17 Heat of formation + Delta-G solvation = -65.549006 kcal Electronic energy + Delta-G solvation = -24983.970375 eV Core-core repulsion = 21452.434377 eV Total energy + Delta-G solvation = -3531.535998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02452 -39.02447 -38.57656 -35.95165 -34.39585 -33.19016 -31.26344 -30.00743 -29.43841 -27.42558 -26.78979 -26.66214 -24.86300 -22.54864 -22.23356 -21.18021 -20.86924 -20.13451 -18.23585 -17.14764 -16.99926 -16.72303 -16.26336 -15.59859 -15.47579 -15.38416 -14.75600 -14.65253 -14.31699 -13.79165 -13.66313 -13.60469 -13.25932 -12.85550 -12.75934 -12.52765 -12.29469 -11.99117 -11.73155 -11.59697 -11.48862 -11.43656 -11.34636 -11.11741 -11.01959 -10.73387 -10.60923 -10.46839 -10.11445 -9.84308 -9.70901 -8.86116 -8.51430 -8.35267 -8.30031 -7.75954 -6.34022 -4.02437 1.11855 1.23329 3.05540 3.15599 3.45456 3.47621 3.48543 3.66219 4.20531 4.30635 4.48656 4.58454 4.75411 4.80516 4.89424 4.89938 5.01388 5.05991 5.10897 5.13201 5.21601 5.26272 5.35759 5.43291 5.46020 5.54462 5.62336 5.71423 5.73863 5.79935 5.90948 5.94338 5.99646 6.14155 6.20619 6.47286 6.49456 6.59581 6.63666 6.88242 6.98125 7.23510 7.42031 7.44113 7.51811 7.59641 8.25636 8.49327 8.91388 9.69696 11.06684 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.003133 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.755612 B = 8934.219108 C = 9962.832079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.100 3.900 4 C -0.164 4.164 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.148 4.148 8 C 0.098 3.902 9 O -0.307 6.307 10 C 0.024 3.976 11 C 0.127 3.873 12 H 0.084 0.916 13 N -0.671 5.671 14 C 0.057 3.943 15 C -0.100 4.100 16 C 0.010 3.990 17 C -0.600 4.600 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 1.069 2.931 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.288 1.288 25 C -0.110 4.110 26 C -0.078 4.078 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.340 0.660 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.003 0.997 41 H 0.007 0.993 42 H 0.268 0.732 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.070 -6.907 12.994 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.055 3.945 4 C -0.183 4.183 5 C -0.088 4.088 6 C -0.127 4.127 7 C -0.168 4.168 8 C 0.052 3.948 9 O -0.221 6.221 10 C -0.071 4.071 11 C 0.016 3.984 12 H 0.102 0.898 13 N -0.300 5.300 14 C -0.072 4.072 15 C -0.138 4.138 16 C -0.027 4.027 17 C -0.638 4.638 18 H 0.067 0.933 19 C -0.190 4.190 20 N -0.551 5.551 21 Si 0.897 3.103 22 H -0.214 1.214 23 H -0.208 1.208 24 H -0.215 1.215 25 C -0.148 4.148 26 C -0.115 4.115 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.646 -6.541 12.101 23.170 hybrid contribution -1.309 -0.941 0.958 1.875 sum -19.954 -7.482 13.058 24.994 Atomic orbital electron populations 1.23047 0.78770 1.03849 1.01167 1.86180 1.20858 1.25796 1.89179 1.18027 0.89004 0.84998 1.02496 1.20428 0.99629 0.90416 1.07793 1.20371 0.94132 0.94301 0.99978 1.21116 0.94150 0.96066 1.01354 1.20545 1.00385 0.90157 1.05694 1.18063 0.88206 0.86008 1.02486 1.86149 1.18826 1.28027 1.89086 1.23107 0.78322 1.03996 1.01635 1.21053 0.97810 0.86919 0.92576 0.89777 1.60859 1.05038 1.61845 1.02290 1.22196 0.87195 0.98027 0.99762 1.21486 0.99023 1.00753 0.92536 1.19179 0.90561 0.95700 0.97283 1.22064 0.97822 1.44504 0.99439 0.93338 1.25859 0.93004 0.94900 1.05252 1.70787 1.36295 1.38793 1.09249 0.83552 0.76144 0.76186 0.74439 1.21412 1.20785 1.21474 1.22321 0.92720 0.98883 1.00838 1.21029 0.98309 0.90029 1.02145 0.92822 0.92741 0.88288 0.85033 0.84902 0.92710 0.88053 0.92300 0.84168 0.95849 0.91472 0.92325 0.93550 0.97840 0.97517 0.92208 0.90889 0.89154 0.90908 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.87 10.29 -34.15 -0.35 -4.22 16 3 C 0.10 1.33 6.70 -39.17 -0.26 1.07 16 4 C -0.16 -1.86 9.04 -39.41 -0.36 -2.22 16 5 C -0.09 -1.01 6.14 -104.08 -0.64 -1.65 16 6 C -0.12 -1.62 5.44 -104.15 -0.57 -2.18 16 7 C -0.15 -2.03 8.64 -39.48 -0.34 -2.37 16 8 C 0.10 1.40 6.70 -39.17 -0.26 1.13 16 9 O -0.31 -4.36 10.29 -34.15 -0.35 -4.72 16 10 C 0.02 0.27 9.81 101.05 0.99 1.26 16 11 C 0.13 1.58 3.18 -67.82 -0.22 1.37 16 12 H 0.08 1.07 7.84 -51.93 -0.41 0.66 16 13 N -0.67 -9.81 6.28 -106.84 -0.67 -10.48 16 14 C 0.06 0.98 5.52 -3.83 -0.02 0.96 16 15 C -0.10 -2.11 5.41 -26.73 -0.14 -2.26 16 16 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 17 C -0.60 -17.52 9.11 -34.44 -0.31 -17.83 16 18 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.91 -28.47 13.65 55.43 0.76 -27.72 16 21 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.11 -1.10 6.78 -25.34 -0.17 -1.27 16 26 C -0.08 -0.74 6.77 -26.85 -0.18 -0.92 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.13 1.14 6.29 -52.48 -0.33 0.81 16 31 H 0.13 1.75 5.82 -52.49 -0.31 1.44 16 32 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.34 4.99 8.47 -39.29 -0.33 4.66 16 36 H 0.02 0.41 7.27 -51.93 -0.38 0.03 16 37 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 41 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 42 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.42 370.98 -9.29 -42.71 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.47 Total: 1.44 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.71 Total: -23.27 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.09 Total: -38.20 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.70 Total: -8.93 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.42 -9.29 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280003252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.841 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds