Wall clock time and date at job start Tue Mar 31 2020 10:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47008 * 2 1 4 4 C 1.34231 * 117.00262 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99845 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.46506 * 109.46928 * 179.97438 * 6 4 3 8 8 C 1.46496 * 119.99759 * 90.00349 * 7 6 4 9 9 C 1.52998 * 109.47337 * 89.99861 * 8 7 6 10 10 C 1.53004 * 109.47251 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47304 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00074 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00059 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00201 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99858 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46773 * 60.00693 * 15 13 11 17 17 H 1.48505 * 109.47197 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47269 * 300.00504 * 15 13 11 19 19 C 1.39676 * 120.00128 * 269.99891 * 7 6 4 20 20 C 1.38905 * 120.07383 * 179.72591 * 19 7 6 21 21 C 1.38100 * 119.92673 * 179.77265 * 20 19 7 22 22 C 1.38288 * 120.06926 * 0.50086 * 21 20 19 23 23 C 1.50707 * 119.92077 * 179.76868 * 22 21 20 24 24 C 1.38285 * 120.15185 * 359.75354 * 22 21 20 25 25 C 1.38097 * 120.07415 * 359.97438 * 24 22 21 26 26 H 1.09008 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47677 * 300.00050 * 1 2 3 28 28 H 1.09003 * 109.47116 * 60.00527 * 1 2 3 29 29 H 1.09001 * 109.47677 * 239.99949 * 2 1 3 30 30 H 1.09003 * 109.47116 * 119.99473 * 2 1 3 31 31 H 1.09004 * 109.47103 * 59.99850 * 6 4 3 32 32 H 1.09000 * 109.47247 * 299.99728 * 6 4 3 33 33 H 1.09001 * 109.47057 * 210.00204 * 8 7 6 34 34 H 1.08999 * 109.47333 * 329.99764 * 8 7 6 35 35 H 1.08998 * 109.47036 * 299.99480 * 9 8 7 36 36 H 1.08992 * 109.47282 * 59.99942 * 9 8 7 37 37 H 1.09003 * 109.46453 * 300.00095 * 10 9 8 38 38 H 1.08999 * 109.47518 * 59.99843 * 10 9 8 39 39 H 0.96998 * 119.99984 * 179.97438 * 14 13 11 40 40 H 1.08002 * 120.03617 * 359.97438 * 20 19 7 41 41 H 1.08004 * 119.96780 * 180.25205 * 21 20 19 42 42 H 1.09003 * 109.47310 * 269.97961 * 23 22 21 43 43 H 1.08990 * 109.47472 * 29.98314 * 23 22 21 44 44 H 1.09003 * 109.46623 * 149.98635 * 23 22 21 45 45 H 1.08002 * 119.95946 * 179.97438 * 24 22 21 46 46 H 1.08001 * 120.03557 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 7 5.3837 2.8608 -0.0010 8 6 6.1151 2.8220 -1.2697 9 6 6.4453 4.2489 -1.7120 10 6 7.2087 4.2084 -3.0374 11 6 7.5333 5.6139 -3.4733 12 1 7.2262 6.4523 -2.8657 13 6 8.2233 5.8295 -4.6474 14 7 8.5977 4.8086 -5.3871 15 14 8.6250 7.5718 -5.1882 16 1 9.4627 8.2303 -4.1538 17 1 9.3661 7.5325 -6.4745 18 1 7.3654 8.3377 -5.3664 19 6 6.0810 2.8249 1.2086 20 6 7.4679 2.7464 1.2105 21 6 8.1546 2.7158 2.4083 22 6 7.4625 2.7527 3.6049 23 6 8.2150 2.7138 4.9101 24 6 6.0815 2.8254 3.6067 25 6 5.3890 2.8620 2.4125 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.5849 3.4699 0.8888 32 1 3.5844 3.4694 -0.8912 33 1 7.0394 2.2590 -1.1391 34 1 5.5000 2.3393 -2.0292 35 1 5.5211 4.8118 -1.8427 36 1 7.0604 4.7316 -0.9526 37 1 8.1329 3.6453 -2.9071 38 1 6.5933 3.7259 -3.7966 39 1 9.0827 4.9603 -6.2133 40 1 8.0087 2.7127 0.2762 41 1 9.2331 2.6589 2.4105 42 1 8.3423 1.6782 5.2254 43 1 9.1931 3.1766 4.7795 44 1 7.6537 3.2584 5.6694 45 1 5.5441 2.8536 4.5430 46 1 4.3104 2.9185 2.4146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281488061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:36 Heat of formation + Delta-G solvation = -71.055682 kcal Electronic energy + Delta-G solvation = -24741.298539 eV Core-core repulsion = 21209.523754 eV Total energy + Delta-G solvation = -3531.774785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62222 -39.42314 -37.13186 -36.20041 -33.86070 -32.13594 -32.02769 -31.37424 -30.56702 -28.46856 -27.00801 -25.02423 -23.69263 -22.85046 -22.14066 -21.28113 -20.47124 -19.76639 -17.83085 -17.57798 -16.68625 -16.45929 -16.11458 -15.58415 -14.94919 -14.52754 -14.50854 -14.16331 -13.95339 -13.81195 -13.55951 -13.49343 -13.12467 -13.01199 -12.70613 -12.39775 -12.22643 -12.05915 -11.84614 -11.81608 -11.79109 -11.32846 -11.26849 -10.92434 -10.83619 -10.69755 -10.67709 -10.56291 -10.48383 -9.76057 -9.66808 -9.31764 -9.07011 -8.72990 -8.35859 -7.07323 -6.00783 -4.03429 1.63156 1.72291 2.18911 2.47563 3.29773 3.33023 3.37453 3.40239 4.05175 4.45473 4.61524 4.68728 4.77816 4.81916 4.96783 5.03649 5.08600 5.14131 5.26909 5.34065 5.35018 5.44203 5.51844 5.53529 5.59891 5.66110 5.70564 5.78761 5.84734 5.97006 6.04694 6.12538 6.18014 6.34572 6.43374 6.52514 6.62480 6.76829 6.87274 7.04110 7.06976 7.37584 7.63205 7.65104 7.76144 7.79539 7.98184 8.41077 9.03111 9.60771 11.10324 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.003918 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.257102 B = 7144.236203 C = 9696.424408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.434 3.566 5 O -0.493 6.493 6 C 0.134 3.866 7 N -0.606 5.606 8 C 0.123 3.877 9 C -0.125 4.125 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.223 3.777 20 C -0.180 4.180 21 C -0.072 4.072 22 C -0.153 4.153 23 C -0.102 4.102 24 C -0.075 4.075 25 C -0.200 4.200 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.015 0.985 39 H 0.261 0.739 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.115 0.885 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.928 -7.650 16.919 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.274 3.726 5 O -0.378 6.378 6 C 0.007 3.993 7 N -0.315 5.315 8 C 0.001 3.999 9 C -0.164 4.164 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.122 3.878 20 C -0.201 4.201 21 C -0.090 4.090 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.094 4.094 25 C -0.222 4.222 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.133 0.867 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.705 -8.025 16.578 21.823 hybrid contribution 0.196 0.652 -0.531 0.863 sum -11.509 -7.373 16.047 21.079 Atomic orbital electron populations 1.21801 0.92690 1.02860 1.03520 1.22982 0.95249 0.80543 1.02497 1.86514 1.24919 1.32250 1.84336 1.25047 0.80474 0.94278 0.72842 1.90681 1.60317 1.42873 1.43947 1.20874 0.82020 0.89811 1.06611 1.46407 1.02245 1.78447 1.04404 1.21801 0.96397 0.99176 0.82524 1.22066 1.00473 0.93646 1.00220 1.19039 0.94941 0.97239 0.90177 1.21179 1.35792 0.92578 1.06289 0.92760 1.25018 0.95856 0.96884 0.96645 1.69950 1.39234 1.30044 1.14249 0.86662 0.78513 0.84997 0.77860 1.20218 1.21297 1.20258 1.17791 0.91429 0.93332 0.85266 1.20818 0.92229 1.08062 0.99039 1.20783 0.99287 0.97586 0.91388 1.19616 0.93739 1.07087 0.95044 1.20627 0.99560 1.01436 0.94295 1.20641 0.93488 0.98422 0.96859 1.20551 0.99028 1.11209 0.91407 0.90381 0.91531 0.91391 0.91323 0.91456 0.86717 0.86090 0.90618 0.91365 0.93195 0.92756 0.96508 0.96616 0.92931 0.85287 0.86287 0.92162 0.92092 0.92304 0.86686 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.16 0.38 -0.66 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.31 10.22 -39.26 -0.40 -4.71 16 4 C 0.43 5.92 8.03 36.01 0.29 6.21 16 5 O -0.49 -8.38 16.18 -18.75 -0.30 -8.69 16 6 C 0.13 1.65 5.75 -5.19 -0.03 1.62 16 7 N -0.61 -9.23 2.10 -173.12 -0.36 -9.59 16 8 C 0.12 2.11 5.17 -4.04 -0.02 2.09 16 9 C -0.13 -2.50 5.48 -26.73 -0.15 -2.65 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.22 3.45 6.55 -83.79 -0.55 2.90 16 20 C -0.18 -2.82 9.21 -39.38 -0.36 -3.19 16 21 C -0.07 -1.00 9.69 -39.61 -0.38 -1.38 16 22 C -0.15 -1.96 5.88 -104.58 -0.62 -2.57 16 23 C -0.10 -1.00 10.01 36.01 0.36 -0.64 16 24 C -0.08 -0.95 9.69 -39.62 -0.38 -1.34 16 25 C -0.20 -2.74 9.21 -39.38 -0.36 -3.10 16 26 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.12 1.15 6.20 -51.93 -0.32 0.83 16 32 H 0.12 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.08 1.34 6.19 -51.93 -0.32 1.01 16 34 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 2.10 6.14 -52.49 -0.32 1.78 16 41 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.11 1.34 6.14 -52.49 -0.32 1.02 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -32.71 383.86 -9.29 -42.00 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.58 Total: -0.53 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -2.14 Total: -14.80 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.37 Total: -35.66 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.70 Total: -13.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.71 -9.29 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.058 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds