Wall clock time and date at job start Tue Mar 31 2020 10:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47008 * 2 1 4 4 C 1.34231 * 117.00262 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99845 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.46506 * 109.46928 * 179.97438 * 6 4 3 8 8 C 1.46496 * 119.99759 * 90.00349 * 7 6 4 9 9 C 1.52998 * 109.47337 * 89.99861 * 8 7 6 10 10 C 1.53004 * 109.47251 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47304 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00074 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00059 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00201 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99858 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46773 * 60.00693 * 15 13 11 17 17 H 1.48505 * 109.47197 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47269 * 300.00504 * 15 13 11 19 19 C 1.39676 * 120.00128 * 269.99891 * 7 6 4 20 20 C 1.38905 * 120.07383 * 179.72591 * 19 7 6 21 21 C 1.38100 * 119.92673 * 179.77265 * 20 19 7 22 22 C 1.38288 * 120.06926 * 0.50086 * 21 20 19 23 23 C 1.50707 * 119.92077 * 179.76868 * 22 21 20 24 24 C 1.38285 * 120.15185 * 359.75354 * 22 21 20 25 25 C 1.38097 * 120.07415 * 359.97438 * 24 22 21 26 26 H 1.09008 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47677 * 300.00050 * 1 2 3 28 28 H 1.09003 * 109.47116 * 60.00527 * 1 2 3 29 29 H 1.09001 * 109.47677 * 239.99949 * 2 1 3 30 30 H 1.09003 * 109.47116 * 119.99473 * 2 1 3 31 31 H 1.09004 * 109.47103 * 59.99850 * 6 4 3 32 32 H 1.09000 * 109.47247 * 299.99728 * 6 4 3 33 33 H 1.09001 * 109.47057 * 210.00204 * 8 7 6 34 34 H 1.08999 * 109.47333 * 329.99764 * 8 7 6 35 35 H 1.08998 * 109.47036 * 299.99480 * 9 8 7 36 36 H 1.08992 * 109.47282 * 59.99942 * 9 8 7 37 37 H 1.09003 * 109.46453 * 300.00095 * 10 9 8 38 38 H 1.08999 * 109.47518 * 59.99843 * 10 9 8 39 39 H 0.96998 * 119.99984 * 179.97438 * 14 13 11 40 40 H 1.08002 * 120.03617 * 359.97438 * 20 19 7 41 41 H 1.08004 * 119.96780 * 180.25205 * 21 20 19 42 42 H 1.09003 * 109.47310 * 269.97961 * 23 22 21 43 43 H 1.08990 * 109.47472 * 29.98314 * 23 22 21 44 44 H 1.09003 * 109.46623 * 149.98635 * 23 22 21 45 45 H 1.08002 * 119.95946 * 179.97438 * 24 22 21 46 46 H 1.08001 * 120.03557 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 7 5.3837 2.8608 -0.0010 8 6 6.1151 2.8220 -1.2697 9 6 6.4453 4.2489 -1.7120 10 6 7.2087 4.2084 -3.0374 11 6 7.5333 5.6139 -3.4733 12 1 7.2262 6.4523 -2.8657 13 6 8.2233 5.8295 -4.6474 14 7 8.5977 4.8086 -5.3871 15 14 8.6250 7.5718 -5.1882 16 1 9.4627 8.2303 -4.1538 17 1 9.3661 7.5325 -6.4745 18 1 7.3654 8.3377 -5.3664 19 6 6.0810 2.8249 1.2086 20 6 7.4679 2.7464 1.2105 21 6 8.1546 2.7158 2.4083 22 6 7.4625 2.7527 3.6049 23 6 8.2150 2.7138 4.9101 24 6 6.0815 2.8254 3.6067 25 6 5.3890 2.8620 2.4125 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.5849 3.4699 0.8888 32 1 3.5844 3.4694 -0.8912 33 1 7.0394 2.2590 -1.1391 34 1 5.5000 2.3393 -2.0292 35 1 5.5211 4.8118 -1.8427 36 1 7.0604 4.7316 -0.9526 37 1 8.1329 3.6453 -2.9071 38 1 6.5933 3.7259 -3.7966 39 1 9.0827 4.9603 -6.2133 40 1 8.0087 2.7127 0.2762 41 1 9.2331 2.6589 2.4105 42 1 8.3423 1.6782 5.2254 43 1 9.1931 3.1766 4.7795 44 1 7.6537 3.2584 5.6694 45 1 5.5441 2.8536 4.5430 46 1 4.3104 2.9185 2.4146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281488061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:35 Heat of formation + Delta-G solvation = -86.704311 kcal Electronic energy + Delta-G solvation = -24741.977115 eV Core-core repulsion = 21209.523754 eV Total energy + Delta-G solvation = -3532.453361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68340 -40.49048 -38.21205 -37.37421 -35.71793 -33.73180 -32.96607 -32.33903 -31.78550 -29.73002 -28.41225 -26.39557 -24.92000 -23.91339 -23.32262 -22.30269 -22.12357 -20.95113 -18.86776 -18.77525 -18.39195 -17.65478 -17.25552 -16.81360 -16.44830 -16.02265 -15.64718 -15.33255 -15.10891 -14.88566 -14.67259 -14.39922 -14.31908 -14.28431 -13.95519 -13.62646 -13.25492 -13.15987 -13.06889 -12.88402 -12.78979 -12.63557 -12.58322 -12.52476 -12.48142 -12.21617 -11.81590 -11.68381 -11.54770 -11.52377 -11.37688 -11.28559 -10.55394 -10.51295 -9.80215 -8.25314 -8.15313 -6.30987 0.56030 0.66483 1.13435 1.40003 1.42951 1.49701 1.51497 2.18732 2.41592 2.98690 3.13364 3.70033 3.83961 3.87461 3.98373 4.07877 4.11073 4.16734 4.17908 4.31980 4.33345 4.44683 4.49295 4.56385 4.61001 4.73648 4.80730 4.84272 4.90714 4.91753 4.95023 5.03292 5.13204 5.18042 5.20841 5.24955 5.39991 5.43555 5.51298 5.55901 5.71052 5.84044 5.85170 6.01909 6.16833 6.27083 6.51017 6.74401 6.85331 7.38252 8.91610 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.003918 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.257102 B = 7144.236203 C = 9696.424408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.439 3.561 5 O -0.533 6.533 6 C 0.130 3.870 7 N -0.610 5.610 8 C 0.138 3.862 9 C -0.104 4.104 10 C 0.028 3.972 11 C -0.542 4.542 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.202 3.798 20 C -0.206 4.206 21 C -0.084 4.084 22 C -0.154 4.154 23 C -0.101 4.101 24 C -0.077 4.077 25 C -0.201 4.201 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.047 0.953 37 H -0.010 1.010 38 H -0.005 1.005 39 H 0.263 0.737 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.146 0.854 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -6.480 18.941 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.281 3.719 5 O -0.422 6.422 6 C 0.005 3.995 7 N -0.320 5.320 8 C 0.015 3.985 9 C -0.142 4.142 10 C -0.010 4.010 11 C -0.580 4.580 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.190 1.190 19 C 0.101 3.899 20 C -0.228 4.228 21 C -0.102 4.102 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.096 4.096 25 C -0.223 4.223 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.008 0.992 38 H 0.013 0.987 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.163 0.837 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.279 -6.848 18.631 23.882 hybrid contribution 0.659 0.216 -1.097 1.298 sum -12.620 -6.632 17.534 22.598 Atomic orbital electron populations 1.21814 0.90089 1.04321 1.03889 1.23247 0.97253 0.79496 1.02081 1.86516 1.23818 1.33493 1.83736 1.25257 0.80758 0.94255 0.71623 1.90670 1.61277 1.44167 1.46036 1.21164 0.80219 0.89440 1.08708 1.46271 1.03355 1.78981 1.03411 1.21376 0.96343 0.96941 0.83848 1.21764 0.99778 0.95645 0.97049 1.18925 0.94054 0.95667 0.92372 1.21627 1.35894 0.93769 1.06674 0.92280 1.25964 0.95608 1.01452 0.96724 1.70088 1.39992 1.32517 1.14739 0.85528 0.78709 0.79500 0.77490 1.19324 1.20882 1.19001 1.18006 0.91468 0.94443 0.85943 1.20862 0.92918 1.09987 0.99076 1.21011 1.00058 0.97713 0.91459 1.20023 0.94292 1.05522 0.95782 1.20676 0.99682 1.02419 0.92962 1.21055 0.93640 0.97148 0.97725 1.20827 1.00086 1.10445 0.90970 0.88386 0.90826 0.91292 0.92173 0.91583 0.83826 0.84600 0.91893 0.91525 0.92253 0.93450 0.99151 0.98688 0.92783 0.87280 0.85249 0.91184 0.91569 0.90615 0.83655 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.36 -8.07 10.22 -51.43 -0.53 -8.60 16 4 C 0.44 11.69 8.03 71.24 0.57 12.26 16 5 O -0.53 -18.31 16.18 21.96 0.36 -17.95 16 6 C 0.13 3.04 5.75 85.63 0.49 3.54 16 7 N -0.61 -18.60 2.10 -701.63 -1.47 -20.07 16 8 C 0.14 4.93 5.17 86.38 0.45 5.38 16 9 C -0.10 -4.24 5.48 30.59 0.17 -4.08 16 10 C 0.03 1.45 4.97 29.85 0.15 1.60 16 11 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 15 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 C 0.20 6.22 6.55 38.21 0.25 6.47 16 20 C -0.21 -6.71 9.21 22.40 0.21 -6.51 16 21 C -0.08 -2.33 9.69 22.25 0.22 -2.12 16 22 C -0.15 -3.68 5.88 -19.84 -0.12 -3.79 16 23 C -0.10 -1.70 10.01 71.24 0.71 -0.99 16 24 C -0.08 -1.76 9.69 22.25 0.22 -1.55 16 25 C -0.20 -5.16 9.21 22.40 0.21 -4.95 16 26 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.14 2.50 6.20 -2.38 -0.01 2.49 16 32 H 0.14 2.77 8.07 -2.39 -0.02 2.75 16 33 H 0.06 2.39 6.19 -2.39 -0.01 2.38 16 34 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.11 3.86 6.14 -2.91 -0.02 3.85 16 41 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 44 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 45 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.13 2.77 6.14 -2.91 -0.02 2.76 16 Total: -1.00 -71.91 383.86 7.01 -64.90 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.94 Total: 16.65 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 5.40 Total: -24.50 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.19 Total: -76.95 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.17 Total: -26.55 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -71.91 7.01 -64.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.808 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds