Wall clock time and date at job start Tue Mar 31 2020 08:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46929 * 2 1 4 4 C 1.46500 * 119.99834 * 265.04448 * 3 2 1 5 5 C 1.50699 * 109.47471 * 276.54815 * 4 3 2 6 6 H 1.08005 * 119.99683 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00073 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47052 * 89.99848 * 9 7 5 11 11 H 1.48500 * 109.47020 * 210.00161 * 9 7 5 12 12 H 1.48499 * 109.46923 * 329.99869 * 9 7 5 13 13 C 1.34773 * 120.00075 * 85.04859 * 3 2 1 14 14 O 1.21285 * 119.99760 * 5.72105 * 13 3 2 15 15 C 1.50701 * 120.00345 * 185.71953 * 13 3 2 16 16 C 1.52997 * 109.47015 * 286.26589 * 15 13 3 17 17 O 1.42907 * 109.46566 * 46.26371 * 15 13 3 18 18 C 1.52993 * 109.47273 * 166.26097 * 15 13 3 19 19 C 1.52997 * 109.47042 * 180.02562 * 18 15 13 20 20 C 1.50698 * 109.47206 * 180.02562 * 19 18 15 21 21 C 1.38243 * 120.00054 * 269.72409 * 20 19 18 22 22 C 1.38230 * 120.00067 * 179.76298 * 21 20 19 23 23 C 1.38232 * 119.99969 * 0.51441 * 22 21 20 24 24 C 1.38237 * 120.00230 * 359.74210 * 23 22 21 25 25 C 1.38231 * 119.99665 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46871 * 304.98995 * 1 2 3 27 27 H 1.08994 * 109.47164 * 64.98588 * 1 2 3 28 28 H 1.08994 * 109.47115 * 184.99071 * 1 2 3 29 29 H 1.08997 * 109.46980 * 240.00266 * 2 1 3 30 30 H 1.08999 * 109.47042 * 120.00167 * 2 1 3 31 31 H 1.09001 * 109.47232 * 36.54647 * 4 3 2 32 32 H 1.09004 * 109.47205 * 156.54702 * 4 3 2 33 33 H 0.97004 * 119.99565 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46736 * 174.99398 * 16 15 13 35 35 H 1.09002 * 109.47476 * 54.99614 * 16 15 13 36 36 H 1.08992 * 109.47353 * 294.99176 * 16 15 13 37 37 H 0.96695 * 113.99922 * 60.00157 * 17 15 13 38 38 H 1.08999 * 109.47192 * 300.00104 * 18 15 13 39 39 H 1.09004 * 109.46767 * 60.00480 * 18 15 13 40 40 H 1.09003 * 109.47476 * 299.99991 * 19 18 15 41 41 H 1.08995 * 109.47343 * 60.00233 * 19 18 15 42 42 H 1.08005 * 119.99506 * 0.02562 * 21 20 19 43 43 H 1.08004 * 119.99955 * 180.23278 * 22 21 20 44 44 H 1.08004 * 119.99921 * 179.72561 * 23 22 21 45 45 H 1.07995 * 119.99939 * 179.97438 * 24 23 22 46 46 H 1.08005 * 119.99861 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3658 2.0353 -1.2640 5 6 3.7706 1.6563 -1.6563 6 1 4.3471 0.9947 -1.0267 7 6 4.3202 2.1549 -2.8183 8 7 3.6183 2.9609 -3.5846 9 14 6.0613 1.6845 -3.3048 10 1 6.0273 0.4578 -4.1410 11 1 6.6761 2.7936 -4.0777 12 1 6.8647 1.4283 -2.0825 13 6 2.1479 2.0502 1.1628 14 8 1.9604 1.4780 2.2157 15 6 2.5259 3.5090 1.1549 16 6 4.0071 3.6501 0.7986 17 8 1.7350 4.2006 0.1862 18 6 2.2751 4.1084 2.5400 19 6 2.6583 5.5896 2.5317 20 6 2.4118 6.1798 3.8962 21 6 1.1849 6.7425 4.1946 22 6 0.9572 7.2795 5.4478 23 6 1.9599 7.2635 6.3992 24 6 3.1886 6.7056 6.0992 25 6 3.4147 6.1643 4.8475 26 1 -0.3633 0.5893 0.8419 27 1 -0.3633 0.4345 -0.9312 28 1 -0.3633 -1.0237 0.0894 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6725 1.7147 -2.0416 32 1 2.3015 3.1167 -1.1432 33 1 4.0049 3.3115 -4.4023 34 1 4.2594 4.7065 0.7057 35 1 4.2031 3.1452 -0.1473 36 1 4.6142 3.1993 1.5836 37 1 0.7831 4.1534 0.3495 38 1 1.2199 4.0078 2.7938 39 1 2.8784 3.5808 3.2788 40 1 3.7135 5.6906 2.2778 41 1 2.0547 6.1169 1.7930 42 1 0.4028 6.7586 3.4499 43 1 -0.0027 7.7157 5.6821 44 1 1.7834 7.6871 7.3769 45 1 3.9720 6.6935 6.8424 46 1 4.3748 5.7288 4.6129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283331885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:08 Heat of formation + Delta-G solvation = -70.485972 kcal Electronic energy + Delta-G solvation = -25829.670453 eV Core-core repulsion = 22297.920372 eV Total energy + Delta-G solvation = -3531.750081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 5.29 seconds Orbital eigenvalues (eV) -39.97152 -39.16143 -36.74436 -35.30845 -33.72333 -32.77447 -31.17846 -30.90540 -30.23301 -27.85147 -27.06725 -24.83997 -23.35668 -22.92452 -22.58232 -21.36966 -20.18036 -18.70158 -17.01164 -16.76902 -16.42339 -15.79767 -15.41249 -15.28425 -14.85052 -14.73319 -14.37325 -13.99435 -13.59475 -13.39465 -13.16674 -12.94674 -12.86534 -12.65817 -12.25626 -12.00788 -11.88624 -11.84466 -11.59586 -11.45320 -11.22588 -11.17481 -10.99062 -10.91108 -10.86817 -10.70051 -10.53389 -10.42087 -10.10677 -9.87303 -9.45137 -8.94794 -8.82328 -8.60029 -8.33074 -7.65444 -6.12658 -4.17465 1.34591 1.37491 3.23841 3.25180 3.31812 3.35749 3.73202 3.92740 4.35285 4.64722 4.80459 4.83422 4.95864 5.08413 5.13299 5.20107 5.28129 5.40066 5.50890 5.52506 5.62044 5.72971 5.75590 5.83083 5.87946 5.92411 6.02066 6.08225 6.25414 6.27349 6.34816 6.41953 6.45686 6.46918 6.48557 6.49573 6.63357 6.70823 6.91446 6.99654 7.22206 7.47480 7.71730 7.79932 7.94946 8.16028 8.41327 8.84320 9.00384 9.46082 10.93243 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003875 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.128634 B = 7224.645045 C = 8190.526146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.111 3.889 3 N -0.582 5.582 4 C 0.207 3.793 5 C -0.535 4.535 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.488 3.512 14 O -0.574 6.574 15 C 0.131 3.869 16 C -0.166 4.166 17 O -0.528 6.528 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.071 4.071 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.058 0.942 37 H 0.367 0.633 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 6.432 12.771 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.311 5.311 4 C 0.088 3.912 5 C -0.574 4.574 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.275 3.725 14 O -0.456 6.456 15 C 0.088 3.912 16 C -0.222 4.222 17 O -0.333 6.333 18 C -0.156 4.156 19 C -0.118 4.118 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.214 0.786 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.824 6.365 12.835 14.828 hybrid contribution 0.420 -0.494 -0.176 0.672 sum -3.403 5.871 12.659 14.363 Atomic orbital electron populations 1.22091 0.96943 1.01188 1.01719 1.21258 0.93266 0.84410 1.02371 1.48335 1.61370 1.12774 1.08633 1.20196 0.95075 0.97210 0.78715 1.21452 0.99309 1.29587 1.07061 0.92401 1.24909 0.97806 0.94882 0.96082 1.69936 1.36970 1.31602 1.13659 0.86617 0.84643 0.78190 0.78764 1.20641 1.21041 1.19764 1.21263 0.77488 0.90024 0.83715 1.90592 1.53194 1.70299 1.31469 1.21216 0.94526 0.87267 0.88228 1.22250 0.90331 1.03377 1.06288 1.86716 1.20723 1.75623 1.50216 1.21963 1.02348 0.94499 0.96786 1.20660 1.03084 0.95316 0.92737 1.20049 0.93690 0.97080 0.96306 1.21100 0.96860 0.98797 0.96904 1.21122 0.99000 0.99984 0.93755 1.21093 0.93835 1.00793 0.99292 1.21129 0.97207 0.98715 0.96753 1.21119 0.99247 0.99847 0.93407 0.93028 0.92616 0.92503 0.90278 0.91571 0.95723 0.88858 0.92630 0.91772 0.86024 0.92274 0.78602 0.91779 0.90374 0.90401 0.90134 0.86089 0.86348 0.86488 0.86323 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.20 37.16 0.38 -2.19 16 2 C 0.11 2.08 6.14 -4.04 -0.02 2.06 16 3 N -0.58 -12.18 2.47 -175.06 -0.43 -12.61 16 4 C 0.21 4.86 4.48 -5.19 -0.02 4.84 16 5 C -0.54 -13.71 6.91 -34.44 -0.24 -13.95 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.88 -24.20 13.29 55.43 0.74 -23.46 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.49 9.99 6.60 -10.99 -0.07 9.92 16 14 O -0.57 -12.76 15.62 5.55 0.09 -12.67 16 15 C 0.13 2.32 0.64 -91.78 -0.06 2.27 16 16 C -0.17 -3.09 8.08 37.16 0.30 -2.79 16 17 O -0.53 -9.14 9.31 -35.23 -0.33 -9.46 16 18 C -0.12 -1.79 3.83 -26.74 -0.10 -1.89 16 19 C -0.08 -1.06 4.85 -27.89 -0.14 -1.20 16 20 C -0.07 -0.90 5.13 -104.62 -0.54 -1.43 16 21 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 22 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 23 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 25 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 30 H 0.07 1.27 7.50 -51.93 -0.39 0.88 16 31 H 0.02 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.09 2.25 4.11 -51.71 -0.21 2.04 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.06 1.09 6.71 -51.92 -0.35 0.74 16 35 H 0.12 2.71 4.24 -51.93 -0.22 2.49 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.37 5.10 9.04 45.80 0.41 5.52 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.27 7.95 -51.93 -0.41 0.86 16 40 H 0.08 1.03 6.49 -51.93 -0.34 0.69 16 41 H 0.08 1.05 7.62 -51.93 -0.40 0.65 16 42 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -29.51 370.32 -8.46 -37.97 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.51 Total: 10.69 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.57 Total: -11.41 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.30 Total: -36.07 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.24 Total: -22.13 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.51 -8.46 -37.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283331885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.513 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds