Wall clock time and date at job start Tue Mar 31 2020 08:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46975 * 2 1 4 4 C 1.46492 * 120.00273 * 265.47847 * 3 2 1 5 5 C 1.50706 * 109.47106 * 270.00261 * 4 3 2 6 6 H 1.08004 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99974 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00603 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00149 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46904 * 59.99863 * 9 7 5 11 11 H 1.48501 * 109.47522 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46973 * 300.00308 * 9 7 5 13 13 C 1.34781 * 119.99798 * 85.47475 * 3 2 1 14 14 O 1.21286 * 119.99896 * 5.05314 * 13 3 2 15 15 C 1.50700 * 120.00135 * 185.04986 * 13 3 2 16 16 C 1.53003 * 109.47096 * 78.65060 * 15 13 3 17 17 O 1.42900 * 109.46935 * 318.65398 * 15 13 3 18 18 C 1.52995 * 109.47182 * 198.65408 * 15 13 3 19 19 C 1.53008 * 109.46923 * 185.00165 * 18 15 13 20 20 C 1.50699 * 109.46853 * 179.97438 * 19 18 15 21 21 C 1.38233 * 120.00411 * 90.00217 * 20 19 18 22 22 C 1.38228 * 120.00573 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99648 * 359.95745 * 22 21 20 24 24 C 1.38237 * 120.00125 * 0.27347 * 23 22 21 25 25 C 1.38235 * 119.99598 * 359.51470 * 24 23 22 26 26 H 1.08997 * 109.46861 * 184.89707 * 1 2 3 27 27 H 1.09010 * 109.47140 * 304.89532 * 1 2 3 28 28 H 1.08998 * 109.47302 * 64.89138 * 1 2 3 29 29 H 1.08993 * 109.47350 * 240.00136 * 2 1 3 30 30 H 1.09005 * 109.47000 * 119.99805 * 2 1 3 31 31 H 1.08997 * 109.47374 * 30.00037 * 4 3 2 32 32 H 1.09006 * 109.47389 * 150.00096 * 4 3 2 33 33 H 0.96993 * 120.00428 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46972 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.46757 * 299.99944 * 16 15 13 36 36 H 1.08998 * 109.46794 * 59.99668 * 16 15 13 37 37 H 0.96704 * 113.99688 * 293.85765 * 17 15 13 38 38 H 1.08994 * 109.47546 * 65.00173 * 18 15 13 39 39 H 1.09001 * 109.47149 * 304.99293 * 18 15 13 40 40 H 1.08994 * 109.47003 * 59.99676 * 19 18 15 41 41 H 1.08996 * 109.47097 * 299.99901 * 19 18 15 42 42 H 1.07998 * 119.99739 * 359.96996 * 21 20 19 43 43 H 1.07996 * 120.00289 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.99970 * 180.02562 * 23 22 21 45 45 H 1.07995 * 119.99872 * 179.73246 * 24 23 22 46 46 H 1.08004 * 119.99466 * 180.25533 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3568 2.0386 -1.2647 5 6 3.8083 1.7918 -1.5864 6 1 4.4177 1.2044 -0.9155 7 6 4.3583 2.3167 -2.7365 8 7 3.6163 3.0324 -3.5531 9 14 6.1577 2.0115 -3.1349 10 1 6.3967 0.5509 -3.2571 11 1 6.5008 2.6777 -4.4170 12 1 7.0058 2.5626 -2.0476 13 6 2.1561 2.0473 1.1636 14 8 1.9641 1.4756 2.2160 15 6 2.5488 3.5022 1.1572 16 6 1.3261 4.3590 0.8222 17 8 3.5644 3.7171 0.1752 18 6 3.0825 3.8925 2.5368 19 6 3.3641 5.3962 2.5681 20 6 3.8893 5.7807 3.9272 21 6 5.2489 5.7554 4.1755 22 6 5.7307 6.1087 5.4220 23 6 4.8528 6.4880 6.4202 24 6 3.4928 6.5087 6.1735 25 6 3.0114 6.1597 4.9255 26 1 -0.3633 -1.0239 0.0877 27 1 -0.3634 0.5880 0.8430 28 1 -0.3634 0.4361 -0.9305 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7340 1.6340 -2.0625 32 1 2.1816 3.1107 -1.1752 33 1 4.0033 3.4014 -4.3624 34 1 1.6103 5.4113 0.8171 35 1 0.9460 4.0808 -0.1608 36 1 0.5514 4.1950 1.5711 37 1 4.4030 3.2785 0.3742 38 1 4.0040 3.3461 2.7379 39 1 2.3407 3.6460 3.2965 40 1 2.4427 5.9425 2.3670 41 1 4.1058 5.6428 1.8084 42 1 5.9348 5.4597 3.3954 43 1 6.7929 6.0885 5.6160 44 1 5.2292 6.7644 7.3941 45 1 2.8067 6.8009 6.9546 46 1 1.9491 6.1798 4.7316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283331887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:18 Heat of formation + Delta-G solvation = -68.974450 kcal Electronic energy + Delta-G solvation = -25945.342093 eV Core-core repulsion = 22413.657556 eV Total energy + Delta-G solvation = -3531.684536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.88957 -39.12865 -36.58730 -35.27805 -33.56540 -32.60805 -31.05588 -30.88000 -30.24507 -27.99953 -26.89718 -25.00221 -23.32968 -22.90030 -22.56113 -21.36497 -20.11258 -18.49085 -16.89782 -16.72311 -16.44579 -15.73534 -15.36675 -15.24802 -14.74284 -14.67079 -14.34087 -13.98272 -13.54769 -13.38146 -13.06616 -12.90207 -12.83873 -12.62679 -12.19343 -12.05897 -11.98907 -11.86708 -11.56347 -11.36987 -11.29581 -11.12505 -11.10511 -10.93815 -10.74983 -10.64275 -10.49166 -10.43085 -10.03740 -9.70540 -9.57379 -8.92554 -8.74059 -8.50439 -8.26938 -7.64788 -6.03950 -4.06848 1.36683 1.39737 3.28516 3.31417 3.34702 3.38824 3.75820 3.95743 4.41821 4.77568 4.85374 4.88299 4.98301 5.10361 5.16473 5.27139 5.31651 5.41416 5.49583 5.54421 5.63227 5.67153 5.77969 5.83214 5.88803 5.91760 6.00766 6.08144 6.13325 6.22450 6.26901 6.27669 6.42377 6.46749 6.48714 6.50840 6.58599 6.64102 6.74459 6.91076 7.02063 7.45107 7.69198 7.86890 8.23889 8.32033 8.46124 8.90557 9.05133 9.55969 11.04068 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.004379 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.375019 B = 6393.061979 C = 7732.441396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.584 5.584 4 C 0.236 3.764 5 C -0.517 4.517 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.489 3.511 14 O -0.577 6.577 15 C 0.121 3.879 16 C -0.138 4.138 17 O -0.509 6.509 18 C -0.121 4.121 19 C -0.082 4.082 20 C -0.071 4.071 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.119 4.119 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.375 0.625 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 5.533 12.978 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 N -0.314 5.314 4 C 0.117 3.883 5 C -0.556 4.556 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.276 3.724 14 O -0.459 6.459 15 C 0.077 3.923 16 C -0.195 4.195 17 O -0.314 6.314 18 C -0.159 4.159 19 C -0.119 4.119 20 C -0.071 4.071 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.137 4.137 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.224 0.776 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.948 5.682 13.002 14.322 hybrid contribution 1.535 -0.598 -0.121 1.652 sum -0.413 5.084 12.881 13.854 Atomic orbital electron populations 1.22100 0.96940 1.01172 1.01798 1.21255 0.93322 0.84389 1.02275 1.48359 1.61551 1.12811 1.08697 1.19701 0.95527 0.94793 0.78261 1.21245 0.95342 1.32569 1.06421 0.92891 1.24804 0.97442 0.94973 0.96063 1.69899 1.35897 1.34470 1.12563 0.86706 0.85609 0.78175 0.77669 1.20603 1.21404 1.20274 1.21359 0.77573 0.89891 0.83557 1.90584 1.53745 1.69966 1.31578 1.21119 0.91218 0.90879 0.89105 1.21821 0.95098 0.99902 1.02695 1.86906 1.23610 1.75735 1.45179 1.22005 1.02072 0.94735 0.97074 1.20699 1.02009 0.96152 0.93023 1.20039 0.93445 0.97462 0.96173 1.21131 0.95180 1.00047 0.97189 1.21133 0.99549 0.99588 0.93535 1.21093 0.93620 1.01232 0.99076 1.21116 0.95526 1.00314 0.96934 1.21090 0.99603 0.99865 0.93121 0.92508 0.92918 0.92655 0.90441 0.91533 0.96119 0.91538 0.92838 0.90923 0.90897 0.91825 0.77574 0.91626 0.90437 0.90567 0.89965 0.85964 0.86335 0.86509 0.86373 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.21 37.16 0.38 -2.23 16 2 C 0.11 2.09 6.12 -4.04 -0.02 2.06 16 3 N -0.58 -12.24 2.46 -175.06 -0.43 -12.67 16 4 C 0.24 5.55 4.62 -5.20 -0.02 5.52 16 5 C -0.52 -13.01 7.08 -34.44 -0.24 -13.25 16 6 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.49 10.00 6.63 -10.98 -0.07 9.92 16 14 O -0.58 -12.82 15.54 5.55 0.09 -12.74 16 15 C 0.12 2.13 0.65 -91.77 -0.06 2.07 16 16 C -0.14 -2.20 8.11 37.16 0.30 -1.89 16 17 O -0.51 -9.89 8.34 -35.23 -0.29 -10.18 16 18 C -0.12 -1.86 3.97 -26.73 -0.11 -1.96 16 19 C -0.08 -1.08 4.75 -27.88 -0.13 -1.21 16 20 C -0.07 -0.91 5.13 -104.63 -0.54 -1.45 16 21 C -0.12 -1.44 9.70 -39.59 -0.38 -1.83 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.13 -1.39 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 30 H 0.07 1.27 7.50 -51.93 -0.39 0.88 16 31 H 0.02 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.07 1.62 4.20 -51.93 -0.22 1.40 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 34 H 0.07 1.03 6.35 -51.93 -0.33 0.70 16 35 H 0.07 1.28 6.59 -51.93 -0.34 0.94 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.38 7.04 8.29 45.56 0.38 7.42 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.25 7.72 -51.93 -0.40 0.85 16 40 H 0.08 0.94 6.29 -51.93 -0.33 0.61 16 41 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -29.30 370.69 -8.56 -37.86 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.64 Total: 10.07 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.58 Total: -9.52 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.31 Total: -36.41 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.21 Total: -22.92 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.30 -8.56 -37.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283331887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.116 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds