Wall clock time and date at job start Tue Mar 31 2020 08:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46975 * 2 1 4 4 C 1.46492 * 120.00273 * 265.47847 * 3 2 1 5 5 C 1.50706 * 109.47106 * 270.00261 * 4 3 2 6 6 H 1.08004 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99974 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00603 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00149 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46904 * 59.99863 * 9 7 5 11 11 H 1.48501 * 109.47522 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46973 * 300.00308 * 9 7 5 13 13 C 1.34781 * 119.99798 * 85.47475 * 3 2 1 14 14 O 1.21286 * 119.99896 * 5.05314 * 13 3 2 15 15 C 1.50700 * 120.00135 * 185.04986 * 13 3 2 16 16 C 1.53003 * 109.47096 * 78.65060 * 15 13 3 17 17 O 1.42900 * 109.46935 * 318.65398 * 15 13 3 18 18 C 1.52995 * 109.47182 * 198.65408 * 15 13 3 19 19 C 1.53008 * 109.46923 * 185.00165 * 18 15 13 20 20 C 1.50699 * 109.46853 * 179.97438 * 19 18 15 21 21 C 1.38233 * 120.00411 * 90.00217 * 20 19 18 22 22 C 1.38228 * 120.00573 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99648 * 359.95745 * 22 21 20 24 24 C 1.38237 * 120.00125 * 0.27347 * 23 22 21 25 25 C 1.38235 * 119.99598 * 359.51470 * 24 23 22 26 26 H 1.08997 * 109.46861 * 184.89707 * 1 2 3 27 27 H 1.09010 * 109.47140 * 304.89532 * 1 2 3 28 28 H 1.08998 * 109.47302 * 64.89138 * 1 2 3 29 29 H 1.08993 * 109.47350 * 240.00136 * 2 1 3 30 30 H 1.09005 * 109.47000 * 119.99805 * 2 1 3 31 31 H 1.08997 * 109.47374 * 30.00037 * 4 3 2 32 32 H 1.09006 * 109.47389 * 150.00096 * 4 3 2 33 33 H 0.96993 * 120.00428 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46972 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.46757 * 299.99944 * 16 15 13 36 36 H 1.08998 * 109.46794 * 59.99668 * 16 15 13 37 37 H 0.96704 * 113.99688 * 293.85765 * 17 15 13 38 38 H 1.08994 * 109.47546 * 65.00173 * 18 15 13 39 39 H 1.09001 * 109.47149 * 304.99293 * 18 15 13 40 40 H 1.08994 * 109.47003 * 59.99676 * 19 18 15 41 41 H 1.08996 * 109.47097 * 299.99901 * 19 18 15 42 42 H 1.07998 * 119.99739 * 359.96996 * 21 20 19 43 43 H 1.07996 * 120.00289 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.99970 * 180.02562 * 23 22 21 45 45 H 1.07995 * 119.99872 * 179.73246 * 24 23 22 46 46 H 1.08004 * 119.99466 * 180.25533 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3568 2.0386 -1.2647 5 6 3.8083 1.7918 -1.5864 6 1 4.4177 1.2044 -0.9155 7 6 4.3583 2.3167 -2.7365 8 7 3.6163 3.0324 -3.5531 9 14 6.1577 2.0115 -3.1349 10 1 6.3967 0.5509 -3.2571 11 1 6.5008 2.6777 -4.4170 12 1 7.0058 2.5626 -2.0476 13 6 2.1561 2.0473 1.1636 14 8 1.9641 1.4756 2.2160 15 6 2.5488 3.5022 1.1572 16 6 1.3261 4.3590 0.8222 17 8 3.5644 3.7171 0.1752 18 6 3.0825 3.8925 2.5368 19 6 3.3641 5.3962 2.5681 20 6 3.8893 5.7807 3.9272 21 6 5.2489 5.7554 4.1755 22 6 5.7307 6.1087 5.4220 23 6 4.8528 6.4880 6.4202 24 6 3.4928 6.5087 6.1735 25 6 3.0114 6.1597 4.9255 26 1 -0.3633 -1.0239 0.0877 27 1 -0.3634 0.5880 0.8430 28 1 -0.3634 0.4361 -0.9305 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7340 1.6340 -2.0625 32 1 2.1816 3.1107 -1.1752 33 1 4.0033 3.4014 -4.3624 34 1 1.6103 5.4113 0.8171 35 1 0.9460 4.0808 -0.1608 36 1 0.5514 4.1950 1.5711 37 1 4.4030 3.2785 0.3742 38 1 4.0040 3.3461 2.7379 39 1 2.3407 3.6460 3.2965 40 1 2.4427 5.9425 2.3670 41 1 4.1058 5.6428 1.8084 42 1 5.9348 5.4597 3.3954 43 1 6.7929 6.0885 5.6160 44 1 5.2292 6.7644 7.3941 45 1 2.8067 6.8009 6.9546 46 1 1.9491 6.1798 4.7316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283331887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:17 Heat of formation + Delta-G solvation = -84.449998 kcal Electronic energy + Delta-G solvation = -25946.013163 eV Core-core repulsion = 22413.657556 eV Total energy + Delta-G solvation = -3532.355606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40523 -40.09074 -38.05611 -36.98730 -34.75481 -34.53981 -32.39977 -31.72902 -31.69046 -29.18158 -28.75067 -26.29183 -24.80502 -24.67358 -23.40660 -22.52032 -21.31951 -20.08278 -18.52269 -18.34767 -17.67546 -17.27626 -16.56937 -16.49691 -16.30717 -16.09676 -15.69957 -15.32667 -14.97786 -14.44422 -14.33249 -14.15795 -14.01708 -13.89178 -13.80079 -13.47866 -13.38976 -13.22730 -13.02266 -12.99584 -12.69830 -12.59525 -12.53046 -12.33291 -12.06823 -12.04830 -11.89291 -11.68421 -11.61718 -11.56057 -11.16638 -10.48235 -10.04945 -9.77775 -9.51521 -9.40179 -8.04936 -6.13519 0.49414 0.54388 1.47091 1.48113 1.54323 1.70350 2.32142 2.52238 2.92595 3.26111 3.44011 3.66695 3.73841 3.91766 4.08940 4.15915 4.19872 4.26380 4.36028 4.37608 4.42516 4.52091 4.55747 4.69494 4.72357 4.74827 4.83135 4.85829 4.94089 4.96303 5.01610 5.11396 5.17032 5.19847 5.24112 5.30230 5.36905 5.50734 5.62415 5.66062 5.80606 5.81739 5.94158 6.18151 6.25260 6.63151 6.81940 6.99219 7.35479 7.54087 9.02088 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.004379 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.375019 B = 6393.061979 C = 7732.441396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.104 3.896 3 N -0.590 5.590 4 C 0.254 3.746 5 C -0.515 4.515 6 H 0.048 0.952 7 C 0.028 3.972 8 N -0.921 5.921 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.484 3.516 14 O -0.595 6.595 15 C 0.122 3.878 16 C -0.134 4.134 17 O -0.521 6.521 18 C -0.106 4.106 19 C -0.071 4.071 20 C -0.089 4.089 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.131 4.131 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.063 0.937 31 H -0.001 1.001 32 H 0.059 0.941 33 H 0.261 0.739 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.375 0.625 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 6.049 14.422 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.319 5.319 4 C 0.134 3.866 5 C -0.554 4.554 6 H 0.066 0.934 7 C -0.171 4.171 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 C 0.273 3.727 14 O -0.478 6.478 15 C 0.078 3.922 16 C -0.191 4.191 17 O -0.327 6.327 18 C -0.145 4.145 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.224 0.776 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.608 6.187 14.460 15.810 hybrid contribution 1.408 -0.798 -0.503 1.695 sum -0.200 5.389 13.956 14.962 Atomic orbital electron populations 1.21997 0.94683 1.02918 1.01259 1.21423 0.95226 0.83301 1.01968 1.48380 1.61794 1.13655 1.08109 1.19326 0.94344 0.94323 0.78623 1.21382 0.95985 1.31880 1.06144 0.93412 1.25432 1.00891 0.94825 0.96001 1.70006 1.37456 1.35630 1.13008 0.85783 0.81484 0.77849 0.77430 1.20540 1.21575 1.19318 1.21892 0.76926 0.90973 0.82953 1.90564 1.54627 1.70685 1.31959 1.21260 0.91464 0.89418 0.90055 1.21828 0.94661 1.00612 1.02019 1.86887 1.23917 1.75624 1.46266 1.21853 1.01124 0.96310 0.95182 1.20568 1.02286 0.94373 0.93553 1.20048 0.93948 0.98834 0.96100 1.21295 0.95224 1.00758 0.98037 1.21424 1.00827 0.99155 0.93172 1.21466 0.93561 1.00202 1.00004 1.21457 0.96255 0.99602 0.97069 1.21317 1.00130 0.99935 0.93487 0.89549 0.93783 0.92826 0.90655 0.91840 0.98317 0.92292 0.92966 0.89056 0.92834 0.90205 0.77606 0.92665 0.90999 0.89576 0.90670 0.86000 0.84499 0.83990 0.84046 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 10.21 71.98 0.73 -3.98 16 2 C 0.10 3.89 6.12 86.38 0.53 4.42 16 3 N -0.59 -24.92 2.46 -826.14 -2.04 -26.96 16 4 C 0.25 12.11 4.62 85.64 0.40 12.51 16 5 C -0.52 -26.08 7.08 25.60 0.18 -25.90 16 6 H 0.05 2.44 7.81 -2.91 -0.02 2.41 16 7 C 0.03 1.46 5.46 84.65 0.46 1.92 16 8 N -0.92 -51.04 13.29 21.45 0.28 -50.75 16 9 Si 0.95 41.63 29.54 68.60 2.03 43.66 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.48 19.86 6.63 87.66 0.58 20.44 16 14 O -0.60 -26.41 15.54 -3.05 -0.05 -26.46 16 15 C 0.12 4.29 0.65 -11.54 -0.01 4.28 16 16 C -0.13 -4.19 8.11 71.98 0.58 -3.60 16 17 O -0.52 -20.44 8.34 -148.98 -1.24 -21.68 16 18 C -0.11 -3.25 3.97 30.60 0.12 -3.13 16 19 C -0.07 -1.82 4.75 29.85 0.14 -1.67 16 20 C -0.09 -2.20 5.13 -19.87 -0.10 -2.30 16 21 C -0.14 -3.22 9.70 22.27 0.22 -3.01 16 22 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 23 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 24 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 25 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.07 2.81 8.04 -2.39 -0.02 2.79 16 30 H 0.06 2.40 7.50 -2.38 -0.02 2.39 16 31 H 0.00 -0.06 8.07 -2.39 -0.02 -0.08 16 32 H 0.06 2.93 4.20 -2.38 -0.01 2.92 16 33 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.09 2.49 6.35 -2.39 -0.02 2.47 16 35 H 0.05 1.88 6.59 -2.39 -0.02 1.86 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.38 14.29 8.29 -74.05 -0.61 13.67 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16 40 H 0.09 2.01 6.29 -2.39 -0.02 1.99 16 41 H 0.07 2.03 7.77 -2.39 -0.02 2.01 16 42 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 46 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -61.67 370.69 4.06 -57.61 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.35 Total: 34.13 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.72 Total: -9.56 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.75 Total: -77.71 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.29 Total: -48.14 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -61.67 4.06 -57.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283331887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.839 kcal (2) G-P(sol) polarization free energy of solvation -61.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds