Wall clock time and date at job start Tue Mar 31 2020 09:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46842 * 2 1 4 4 C 1.42898 * 114.00060 * 180.02562 * 3 2 1 5 5 C 1.53779 * 113.61954 * 209.99852 * 4 3 2 6 6 C 1.53775 * 87.08091 * 270.88263 * 5 4 3 7 7 N 1.46901 * 113.61249 * 220.01475 * 6 5 4 8 8 C 1.46900 * 111.00148 * 303.95147 * 7 6 5 9 9 C 1.46902 * 111.00044 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47244 * 189.99914 * 9 7 6 11 11 C 1.38303 * 119.93196 * 269.73037 * 10 9 7 12 12 C 1.38102 * 120.06665 * 179.72628 * 11 10 9 13 13 C 1.38880 * 119.92903 * 0.56807 * 12 11 10 14 14 O 1.35756 * 120.06980 * 179.68556 * 13 12 11 15 15 C 1.34829 * 117.00188 * 174.48772 * 14 13 12 16 16 H 1.07996 * 119.99756 * 5.05177 * 15 14 13 17 17 C 1.38658 * 119.99992 * 185.05475 * 15 14 13 18 18 N 1.31562 * 119.99808 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46995 * 90.00606 * 19 17 15 21 21 H 1.48503 * 109.46826 * 209.99768 * 19 17 15 22 22 H 1.48494 * 109.47503 * 329.99932 * 19 17 15 23 23 C 1.38879 * 119.86682 * 359.70340 * 13 12 11 24 24 C 1.38102 * 119.92481 * 0.02562 * 23 13 12 25 25 C 1.53780 * 87.08043 * 334.56167 * 6 5 4 26 26 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47421 * 300.00009 * 1 2 3 28 28 H 1.09000 * 109.47412 * 60.00152 * 1 2 3 29 29 H 1.08998 * 109.46920 * 239.99921 * 2 1 3 30 30 H 1.08996 * 109.46860 * 119.99357 * 2 1 3 31 31 H 1.09010 * 112.90296 * 341.24821 * 4 3 2 32 32 H 1.08999 * 113.61753 * 156.32645 * 5 4 3 33 33 H 1.08999 * 113.61116 * 25.42877 * 5 4 3 34 34 H 1.08998 * 113.61834 * 89.11667 * 6 5 4 35 35 H 1.09005 * 109.46739 * 60.00083 * 8 7 6 36 36 H 1.08998 * 109.46904 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47118 * 300.00092 * 8 7 6 38 38 H 1.09001 * 109.47018 * 310.00579 * 9 7 6 39 39 H 1.08997 * 109.46766 * 70.00277 * 9 7 6 40 40 H 1.07996 * 119.96395 * 359.97438 * 11 10 9 41 41 H 1.08000 * 120.03530 * 180.27472 * 12 11 10 42 42 H 0.97000 * 119.99677 * 179.97438 * 18 17 15 43 43 H 1.07994 * 120.03673 * 179.97438 * 23 13 12 44 44 H 1.08003 * 119.96309 * 179.97438 * 24 23 13 45 45 H 1.09006 * 113.61364 * 139.98252 * 25 6 5 46 46 H 1.08996 * 113.61502 * 270.88352 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9488 2.7252 0.7038 6 6 3.8390 3.4328 -0.6570 7 7 4.9545 4.3468 -0.9367 8 6 5.0933 5.3493 0.1281 9 6 4.7924 4.9896 -2.2476 10 6 6.0589 5.7224 -2.6079 11 6 6.2180 7.0466 -2.2420 12 6 7.3800 7.7191 -2.5657 13 6 8.3843 7.0677 -3.2698 14 8 9.5250 7.7280 -3.5952 15 6 10.5048 7.0072 -4.1770 16 1 10.3323 5.9737 -4.4384 17 6 11.7338 7.5930 -4.4395 18 7 11.9437 8.8522 -4.1214 19 14 13.0914 6.5942 -5.2450 20 1 12.9931 6.7250 -6.7209 21 1 14.4125 7.0977 -4.7904 22 1 12.9481 5.1662 -4.8639 23 6 8.2193 5.7396 -3.6408 24 6 7.0573 5.0710 -3.3091 25 6 4.0019 2.0465 -1.3025 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9289 0.5458 0.3219 32 1 4.9724 2.6343 1.0675 33 1 3.2645 3.1172 1.4563 34 1 2.8640 3.8861 -0.8361 35 1 5.2822 4.8474 1.0771 36 1 5.9265 6.0126 -0.1039 37 1 4.1746 5.9312 0.2013 38 1 4.5849 4.2302 -3.0015 39 1 3.9634 5.6961 -2.2058 40 1 5.4344 7.5540 -1.6990 41 1 7.5055 8.7519 -2.2759 42 1 12.8037 9.2618 -4.3048 43 1 8.9983 5.2305 -4.1887 44 1 6.9281 4.0382 -3.5976 45 1 3.3603 1.8906 -2.1698 46 1 5.0399 1.7702 -1.4874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286985926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:22 Heat of formation + Delta-G solvation = -21.090822 kcal Electronic energy + Delta-G solvation = -24315.907483 eV Core-core repulsion = 20786.299337 eV Total energy + Delta-G solvation = -3529.608146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.01564 -39.01785 -37.55836 -36.42374 -34.41766 -32.25972 -31.13532 -30.22129 -29.65681 -27.12165 -25.58268 -25.32215 -24.52528 -23.16666 -22.19300 -21.81747 -20.19913 -19.54976 -17.94581 -16.93839 -16.90941 -16.12226 -15.87895 -15.44805 -15.01769 -14.66237 -14.46081 -14.29077 -13.80451 -13.60381 -13.43194 -13.27965 -13.03917 -12.91388 -12.66764 -12.54064 -12.27733 -12.13633 -11.75170 -11.71372 -11.66031 -11.39526 -11.21965 -11.19738 -10.83985 -10.75349 -10.56616 -10.48057 -10.40685 -10.22851 -9.67637 -9.29141 -8.80541 -8.20765 -8.10066 -7.12856 -6.42482 -4.01059 2.25761 2.33868 3.14142 3.15303 3.20147 3.29125 3.98816 4.09521 4.38116 4.51181 4.61267 4.71007 4.76195 4.83813 4.99482 5.04590 5.09248 5.12898 5.26749 5.31527 5.38618 5.44730 5.54382 5.60506 5.64020 5.65996 5.69359 5.75628 5.78599 5.85077 5.90702 5.92544 6.03527 6.11073 6.20996 6.25775 6.47091 6.74408 6.94818 7.00044 7.09164 7.14847 7.25497 7.35250 7.46512 7.49085 7.87399 8.02965 9.03392 9.74220 10.75668 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.002339 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.356993 B =11967.134701 C =12503.546727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.369 6.369 4 C 0.062 3.938 5 C -0.129 4.129 6 C 0.061 3.939 7 N -0.526 5.526 8 C 0.023 3.977 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.069 4.069 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.235 4.235 24 C -0.050 4.050 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 -15.334 7.991 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.289 6.289 4 C 0.003 3.997 5 C -0.167 4.167 6 C -0.047 4.047 7 N -0.250 5.250 8 C -0.125 4.125 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.088 4.088 12 C -0.213 4.213 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.069 4.069 25 C -0.181 4.181 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.037 0.963 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.574 -15.039 7.988 24.471 hybrid contribution 0.140 -0.233 -0.420 0.500 sum -17.433 -15.273 7.568 24.382 Atomic orbital electron populations 1.21749 0.93808 1.02205 1.03145 1.22512 0.95484 0.83900 1.00058 1.87884 1.20062 1.26258 1.94650 1.22946 0.81207 0.97942 0.97557 1.23289 1.01750 0.94969 0.96708 1.23042 0.92897 0.92490 0.96284 1.62297 1.41016 1.19281 1.02405 1.22394 1.00696 0.94926 0.94508 1.20766 0.94293 0.96006 0.90248 1.19073 0.97285 0.94374 1.07042 1.20486 0.96024 0.93771 0.98485 1.20167 0.94389 1.00575 1.06163 1.19388 0.87978 0.90722 0.91795 1.83976 1.20243 1.36128 1.67944 1.21321 0.90677 0.96100 1.38570 0.89086 1.25287 0.97523 0.96322 0.97453 1.70044 1.24282 1.11242 1.44309 0.85718 0.79406 0.79235 0.79106 1.19918 1.20288 1.19198 1.21155 0.99825 0.95669 1.08774 1.20547 0.92473 0.97911 0.95962 1.23504 1.01951 0.95577 0.97071 0.91139 0.91901 0.91830 0.93325 0.93402 0.90702 0.88121 0.90992 0.91679 0.91922 0.90275 0.96279 0.91028 0.95129 0.87545 0.86683 0.92080 0.85664 0.87603 0.91284 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.43 6.50 37.16 0.24 0.67 16 3 O -0.37 -3.76 10.27 -35.23 -0.36 -4.12 16 4 C 0.06 0.58 4.37 -25.92 -0.11 0.47 16 5 C -0.13 -1.28 6.44 -25.92 -0.17 -1.44 16 6 C 0.06 0.70 3.13 -66.90 -0.21 0.49 16 7 N -0.53 -6.98 4.71 -235.35 -1.11 -8.09 16 8 C 0.02 0.29 8.99 60.06 0.54 0.83 16 9 C 0.11 1.62 5.09 -4.98 -0.03 1.59 16 10 C -0.18 -3.05 4.89 -104.58 -0.51 -3.56 16 11 C -0.07 -1.24 7.90 -39.61 -0.31 -1.55 16 12 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 13 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 14 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 15 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 19 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.23 -5.17 9.17 -39.39 -0.36 -5.54 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 25 C -0.14 -1.47 7.49 -25.92 -0.19 -1.66 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.60 7.87 -51.92 -0.41 0.19 16 32 H 0.10 0.98 7.89 -51.93 -0.41 0.57 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.72 7.05 -51.93 -0.37 0.35 16 36 H 0.08 1.15 5.91 -51.93 -0.31 0.85 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 39 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 40 H 0.11 1.64 8.00 -52.49 -0.42 1.22 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 43 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 44 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -30.73 374.16 -9.18 -39.91 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.51 Total: 3.28 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -1.57 Total: -22.35 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.35 Total: -32.85 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.36 Total: -9.30 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.73 -9.18 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286985926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.824 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds