Wall clock time and date at job start Tue Mar 31 2020 09:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46842 * 2 1 4 4 C 1.42898 * 114.00060 * 180.02562 * 3 2 1 5 5 C 1.53779 * 113.61954 * 209.99852 * 4 3 2 6 6 C 1.53775 * 87.08091 * 270.88263 * 5 4 3 7 7 N 1.46901 * 113.61249 * 220.01475 * 6 5 4 8 8 C 1.46900 * 111.00148 * 303.95147 * 7 6 5 9 9 C 1.46902 * 111.00044 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47244 * 189.99914 * 9 7 6 11 11 C 1.38303 * 119.93196 * 269.73037 * 10 9 7 12 12 C 1.38102 * 120.06665 * 179.72628 * 11 10 9 13 13 C 1.38880 * 119.92903 * 0.56807 * 12 11 10 14 14 O 1.35756 * 120.06980 * 179.68556 * 13 12 11 15 15 C 1.34829 * 117.00188 * 174.48772 * 14 13 12 16 16 H 1.07996 * 119.99756 * 5.05177 * 15 14 13 17 17 C 1.38658 * 119.99992 * 185.05475 * 15 14 13 18 18 N 1.31562 * 119.99808 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46995 * 90.00606 * 19 17 15 21 21 H 1.48503 * 109.46826 * 209.99768 * 19 17 15 22 22 H 1.48494 * 109.47503 * 329.99932 * 19 17 15 23 23 C 1.38879 * 119.86682 * 359.70340 * 13 12 11 24 24 C 1.38102 * 119.92481 * 0.02562 * 23 13 12 25 25 C 1.53780 * 87.08043 * 334.56167 * 6 5 4 26 26 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47421 * 300.00009 * 1 2 3 28 28 H 1.09000 * 109.47412 * 60.00152 * 1 2 3 29 29 H 1.08998 * 109.46920 * 239.99921 * 2 1 3 30 30 H 1.08996 * 109.46860 * 119.99357 * 2 1 3 31 31 H 1.09010 * 112.90296 * 341.24821 * 4 3 2 32 32 H 1.08999 * 113.61753 * 156.32645 * 5 4 3 33 33 H 1.08999 * 113.61116 * 25.42877 * 5 4 3 34 34 H 1.08998 * 113.61834 * 89.11667 * 6 5 4 35 35 H 1.09005 * 109.46739 * 60.00083 * 8 7 6 36 36 H 1.08998 * 109.46904 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47118 * 300.00092 * 8 7 6 38 38 H 1.09001 * 109.47018 * 310.00579 * 9 7 6 39 39 H 1.08997 * 109.46766 * 70.00277 * 9 7 6 40 40 H 1.07996 * 119.96395 * 359.97438 * 11 10 9 41 41 H 1.08000 * 120.03530 * 180.27472 * 12 11 10 42 42 H 0.97000 * 119.99677 * 179.97438 * 18 17 15 43 43 H 1.07994 * 120.03673 * 179.97438 * 23 13 12 44 44 H 1.08003 * 119.96309 * 179.97438 * 24 23 13 45 45 H 1.09006 * 113.61364 * 139.98252 * 25 6 5 46 46 H 1.08996 * 113.61502 * 270.88352 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9488 2.7252 0.7038 6 6 3.8390 3.4328 -0.6570 7 7 4.9545 4.3468 -0.9367 8 6 5.0933 5.3493 0.1281 9 6 4.7924 4.9896 -2.2476 10 6 6.0589 5.7224 -2.6079 11 6 6.2180 7.0466 -2.2420 12 6 7.3800 7.7191 -2.5657 13 6 8.3843 7.0677 -3.2698 14 8 9.5250 7.7280 -3.5952 15 6 10.5048 7.0072 -4.1770 16 1 10.3323 5.9737 -4.4384 17 6 11.7338 7.5930 -4.4395 18 7 11.9437 8.8522 -4.1214 19 14 13.0914 6.5942 -5.2450 20 1 12.9931 6.7250 -6.7209 21 1 14.4125 7.0977 -4.7904 22 1 12.9481 5.1662 -4.8639 23 6 8.2193 5.7396 -3.6408 24 6 7.0573 5.0710 -3.3091 25 6 4.0019 2.0465 -1.3025 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9289 0.5458 0.3219 32 1 4.9724 2.6343 1.0675 33 1 3.2645 3.1172 1.4563 34 1 2.8640 3.8861 -0.8361 35 1 5.2822 4.8474 1.0771 36 1 5.9265 6.0126 -0.1039 37 1 4.1746 5.9312 0.2013 38 1 4.5849 4.2302 -3.0015 39 1 3.9634 5.6961 -2.2058 40 1 5.4344 7.5540 -1.6990 41 1 7.5055 8.7519 -2.2759 42 1 12.8037 9.2618 -4.3048 43 1 8.9983 5.2305 -4.1887 44 1 6.9281 4.0382 -3.5976 45 1 3.3603 1.8906 -2.1698 46 1 5.0399 1.7702 -1.4874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286985926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:21 Heat of formation + Delta-G solvation = -39.781816 kcal Electronic energy + Delta-G solvation = -24316.717986 eV Core-core repulsion = 20786.299337 eV Total energy + Delta-G solvation = -3530.418649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.00794 -40.56257 -38.82627 -37.68280 -35.47832 -34.24159 -31.86939 -31.75976 -31.07759 -28.31584 -27.31927 -26.19232 -25.80261 -23.70143 -23.59774 -23.18877 -21.69817 -20.35963 -19.82331 -18.80468 -17.69827 -16.97222 -16.60342 -16.53667 -16.36087 -16.24649 -15.91923 -15.57462 -15.41814 -15.08741 -14.78579 -14.34717 -14.22696 -13.93083 -13.81739 -13.60841 -13.52317 -13.18147 -13.01573 -12.85696 -12.65652 -12.53595 -12.40713 -12.31371 -12.19961 -12.16355 -12.11674 -11.82933 -11.34102 -11.15476 -11.14336 -10.77725 -10.36818 -9.74340 -9.25351 -8.86102 -8.45993 -6.13910 0.61815 0.70002 1.35461 1.44709 1.53150 2.18703 2.65956 2.76539 3.06662 3.35661 3.53432 3.60380 3.76450 3.85624 4.04572 4.07389 4.19248 4.22024 4.22506 4.32071 4.41486 4.45411 4.53082 4.54139 4.61693 4.67090 4.78855 4.81748 4.84091 4.90352 4.93150 5.03079 5.07789 5.10195 5.12698 5.16874 5.20321 5.29580 5.32224 5.34405 5.58778 5.73525 5.83246 6.04370 6.14382 6.21681 6.29724 6.38970 6.98809 7.80155 8.77284 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.002339 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.356993 B =11967.134701 C =12503.546727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.389 6.389 4 C 0.067 3.933 5 C -0.125 4.125 6 C 0.059 3.941 7 N -0.534 5.534 8 C 0.023 3.977 9 C 0.116 3.884 10 C -0.150 4.150 11 C -0.059 4.059 12 C -0.204 4.204 13 C 0.114 3.886 14 O -0.234 6.234 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.242 4.242 24 C -0.049 4.049 25 C -0.140 4.140 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.136 0.864 45 H 0.068 0.932 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.143 -18.241 8.544 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.309 6.309 4 C 0.008 3.992 5 C -0.162 4.162 6 C -0.049 4.049 7 N -0.258 5.258 8 C -0.125 4.125 9 C -0.011 4.011 10 C -0.151 4.151 11 C -0.078 4.078 12 C -0.224 4.224 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.488 4.488 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.262 4.262 24 C -0.068 4.068 25 C -0.178 4.178 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.158 0.842 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.087 0.913 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.641 -17.979 8.558 27.969 hybrid contribution 0.388 0.559 -0.448 0.814 sum -19.253 -17.421 8.111 27.202 Atomic orbital electron populations 1.21768 0.93137 1.03308 1.02553 1.22709 0.96108 0.82903 1.00889 1.87862 1.20372 1.27959 1.94696 1.22915 0.81185 0.98379 0.96701 1.23258 1.01991 0.95008 0.95967 1.23089 0.91797 0.92323 0.97671 1.62259 1.42217 1.19408 1.01884 1.22387 1.00323 0.94845 0.94983 1.20754 0.92434 0.96479 0.91410 1.19540 0.97771 0.94015 1.03818 1.20829 0.95321 0.94117 0.97489 1.20407 0.95033 1.00813 1.06098 1.19924 0.87802 0.92233 0.93704 1.83940 1.21884 1.37759 1.70467 1.21810 0.91331 0.96740 1.38936 0.88162 1.26599 1.00006 0.97580 0.97992 1.70191 1.25255 1.13482 1.47031 0.84585 0.75513 0.77912 0.78188 1.18779 1.19600 1.17677 1.21245 1.01054 0.94944 1.08924 1.20871 0.91327 0.99186 0.95393 1.23477 1.01937 0.94862 0.97525 0.89233 0.92334 0.92547 0.92701 0.92314 0.89089 0.87851 0.90910 0.92248 0.90667 0.92253 0.95281 0.89696 0.93905 0.84236 0.87049 0.91892 0.86462 0.84591 0.91341 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.62 6.50 71.98 0.47 1.09 16 3 O -0.39 -6.97 10.27 -148.98 -1.53 -8.50 16 4 C 0.07 1.06 4.37 31.12 0.14 1.19 16 5 C -0.12 -2.10 6.44 31.12 0.20 -1.90 16 6 C 0.06 1.17 3.13 45.44 0.14 1.31 16 7 N -0.53 -12.43 4.71 -898.53 -4.23 -16.66 16 8 C 0.02 0.51 8.99 127.69 1.15 1.66 16 9 C 0.12 2.88 5.09 85.55 0.44 3.31 16 10 C -0.15 -4.80 4.89 -19.84 -0.10 -4.90 16 11 C -0.06 -2.02 7.90 22.25 0.18 -1.85 16 12 C -0.20 -8.87 9.99 22.39 0.22 -8.65 16 13 C 0.11 5.78 6.65 22.58 0.15 5.93 16 14 O -0.23 -14.34 9.76 -22.80 -0.22 -14.56 16 15 C -0.41 -24.37 9.49 67.92 0.64 -23.73 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 18 N -0.92 -57.23 13.67 21.62 0.30 -56.94 16 19 Si 1.02 43.39 29.55 68.60 2.03 45.41 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.24 -10.79 9.17 22.39 0.21 -10.58 16 24 C -0.05 -1.75 9.69 22.25 0.22 -1.53 16 25 C -0.14 -2.46 7.49 31.12 0.23 -2.22 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.15 7.87 -2.38 -0.02 1.14 16 32 H 0.10 1.70 7.89 -2.39 -0.02 1.68 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.52 7.05 -2.38 -0.02 1.50 16 36 H 0.06 1.58 5.91 -2.39 -0.01 1.57 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 1.94 7.85 -2.39 -0.02 1.92 16 39 H 0.04 1.00 8.06 -2.39 -0.02 0.98 16 40 H 0.14 3.86 8.00 -2.91 -0.02 3.84 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 44 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 45 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.48 374.16 2.77 -67.70 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.95 Total: 26.17 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 5.49 Total: -42.63 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -3.94 Total: -73.60 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.75 Total: -23.06 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.48 2.77 -67.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286985926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds