Wall clock time and date at job start Tue Mar 31 2020 10:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 24.99833 * 7 6 5 9 9 O 1.42892 * 109.47670 * 145.00283 * 7 6 5 10 10 C 1.53003 * 109.47168 * 265.00338 * 7 6 5 11 11 C 1.53124 * 109.52299 * 299.87084 * 10 7 6 12 12 C 1.53041 * 109.27532 * 182.50272 * 11 10 7 13 13 N 1.46846 * 109.57502 * 59.08453 * 12 11 10 14 14 C 1.46898 * 110.99755 * 174.18812 * 13 12 11 15 15 C 1.50695 * 109.47309 * 294.20944 * 14 13 12 16 16 H 1.07997 * 120.00047 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00057 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99587 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46726 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47013 * 119.99900 * 19 17 15 22 22 H 1.48493 * 109.47089 * 239.99896 * 19 17 15 23 23 C 1.46844 * 111.19654 * 298.28986 * 13 12 11 24 24 C 1.53028 * 109.52491 * 61.74248 * 23 13 12 25 25 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 26 26 C 1.38143 * 120.05412 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 28 28 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 29 29 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 31 31 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 32 32 H 0.96697 * 114.00414 * 59.99380 * 9 7 6 33 33 H 1.09000 * 109.52765 * 59.99477 * 10 7 6 34 34 H 1.09003 * 109.49770 * 302.38430 * 11 10 7 35 35 H 1.09002 * 109.50163 * 62.49424 * 11 10 7 36 36 H 1.08991 * 109.41107 * 299.06402 * 12 11 10 37 37 H 1.09000 * 109.44770 * 179.12498 * 12 11 10 38 38 H 1.09002 * 109.47205 * 54.21084 * 14 13 12 39 39 H 1.09008 * 109.46820 * 174.21070 * 14 13 12 40 40 H 0.97007 * 119.99760 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.45873 * 301.72113 * 23 13 12 42 42 H 1.09000 * 109.44960 * 181.75718 * 23 13 12 43 43 H 1.09009 * 109.50425 * 180.88041 * 24 23 13 44 44 H 1.09001 * 109.54082 * 60.78411 * 24 23 13 45 45 H 1.08001 * 119.97543 * 180.02562 * 25 6 5 46 46 H 1.08001 * 120.02739 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9189 -0.4365 9 8 3.2195 5.9431 -0.7768 10 6 4.1051 5.5315 1.4338 11 6 2.7078 5.6748 2.0433 12 6 2.8297 6.2471 3.4574 13 7 3.4976 7.5538 3.4035 14 6 3.5085 8.1943 4.7254 15 6 2.0964 8.5240 5.1356 16 1 1.2732 8.2823 4.4797 17 6 1.8555 9.1352 6.3478 18 7 2.8581 9.4300 7.1463 19 14 0.1050 9.5433 6.8566 20 1 -0.8338 9.1107 5.7905 21 1 -0.2211 8.8345 8.1202 22 1 -0.0214 11.0082 7.0639 23 6 4.8587 7.4326 2.8660 24 6 4.7973 6.8972 1.4338 25 6 1.9212 3.6047 -0.0021 26 6 1.2916 2.3751 -0.0016 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0208 0.3798 0.0016 31 1 5.1346 2.5749 0.0050 32 1 2.3207 6.0811 -0.4479 33 1 4.6898 4.8268 2.0251 34 1 2.1103 6.3487 1.4291 35 1 2.2271 4.6974 2.0853 36 1 3.4146 5.5655 4.0748 37 1 1.8354 6.3649 3.8883 38 1 3.9494 7.5148 5.4548 39 1 4.0971 9.1107 4.6802 40 1 2.6885 9.8596 7.9994 41 1 5.4342 6.7454 3.4863 42 1 5.3381 8.4115 2.8677 43 1 5.8086 6.7926 1.0406 44 1 4.2341 7.5907 0.8092 45 1 1.3343 4.5113 -0.0038 46 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291245902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:26 Heat of formation + Delta-G solvation = -90.029091 kcal Electronic energy + Delta-G solvation = -25331.679642 eV Core-core repulsion = 21799.082108 eV Total energy + Delta-G solvation = -3532.597534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42148 -40.33540 -38.75119 -37.22962 -35.22759 -33.70727 -32.16335 -31.78055 -31.42448 -29.22976 -28.22229 -26.80922 -24.79094 -23.95520 -23.36297 -22.73835 -21.71824 -20.39931 -19.21932 -18.48894 -17.94269 -17.26496 -17.01167 -16.63432 -16.44153 -16.08401 -15.80933 -15.69962 -15.28257 -15.10043 -14.54977 -14.50054 -14.44145 -13.94805 -13.83979 -13.77177 -13.38034 -13.36154 -13.01196 -12.84460 -12.76492 -12.54816 -12.39641 -12.24032 -11.97710 -11.88433 -11.75049 -11.65131 -11.50799 -11.41226 -10.99540 -10.67273 -10.62597 -9.91867 -9.04930 -8.98321 -8.21481 -6.31841 0.40189 0.42408 1.40146 1.40968 1.54597 2.39316 2.39602 2.75291 3.10768 3.32868 3.59474 3.65216 3.81861 3.85629 3.94236 3.98945 4.17672 4.28766 4.36775 4.38477 4.40689 4.46210 4.51008 4.56478 4.64062 4.69577 4.74099 4.82054 4.84680 4.95254 4.97272 5.06141 5.11460 5.17195 5.21653 5.25171 5.30123 5.35141 5.39929 5.53619 5.64805 5.68540 5.81477 6.05582 6.36899 6.44791 6.67620 6.77900 6.85255 7.38136 8.90106 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.003327 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.285951 B = 8415.085418 C = 9557.682774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.110 3.890 4 C -0.164 4.164 5 C -0.075 4.075 6 C -0.154 4.154 7 C 0.169 3.831 8 H 0.117 0.883 9 O -0.563 6.563 10 C -0.107 4.107 11 C -0.102 4.102 12 C 0.068 3.932 13 N -0.540 5.540 14 C 0.207 3.793 15 C -0.521 4.521 16 H 0.065 0.935 17 C -0.001 4.001 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.051 3.949 24 C -0.093 4.093 25 C -0.076 4.076 26 C -0.211 4.211 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.380 0.620 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.005 0.995 37 H 0.059 0.941 38 H -0.044 1.044 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.014 0.986 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 -17.529 -17.579 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.093 4.093 6 C -0.155 4.155 7 C 0.110 3.890 8 H 0.134 0.866 9 O -0.371 6.371 10 C -0.126 4.126 11 C -0.140 4.140 12 C -0.060 4.060 13 N -0.265 5.265 14 C 0.080 3.920 15 C -0.559 4.559 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.077 4.077 24 C -0.131 4.131 25 C -0.094 4.094 26 C -0.230 4.230 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.230 0.770 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.024 0.976 37 H 0.078 0.922 38 H -0.026 1.026 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.153 0.847 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.386 -17.323 -18.085 25.081 hybrid contribution -0.814 0.028 1.957 2.120 sum -2.200 -17.295 -16.128 23.750 Atomic orbital electron populations 1.23311 0.76673 1.05460 1.02105 1.86033 1.23278 1.27004 1.88758 1.19284 0.92872 0.84599 0.96802 1.20633 0.91624 0.99241 1.06752 1.21027 1.00908 0.90511 0.96844 1.20544 0.94454 0.96228 1.04258 1.20687 0.94914 0.83672 0.89775 0.86557 1.86560 1.30052 1.64510 1.55984 1.21796 0.96899 0.97253 0.96607 1.21664 0.97257 1.00435 0.94630 1.21898 0.98600 0.88505 0.97039 1.61981 1.17242 1.21553 1.25726 1.19363 0.96418 0.91992 0.84196 1.21495 0.93247 1.38607 1.02569 0.91726 1.25965 1.01922 0.95562 0.96447 1.70106 1.33106 1.43268 1.11249 0.85306 0.79061 0.77907 0.78185 1.18477 1.20457 1.20363 1.22133 0.89507 0.99498 0.96579 1.21470 1.01173 0.96132 0.94295 1.20924 0.94164 0.97723 0.96625 1.21409 1.00988 0.92001 1.08575 0.92144 0.91723 0.86376 0.84323 0.83346 0.76974 0.90770 0.90910 0.90446 0.97645 0.92204 1.02609 0.98067 0.92703 0.96766 0.92262 0.89893 0.91090 0.84678 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.57 10.50 -92.40 -0.97 -7.54 16 3 C 0.11 2.26 6.69 22.50 0.15 2.41 16 4 C -0.16 -3.21 9.99 22.36 0.22 -2.99 16 5 C -0.07 -1.38 9.67 22.25 0.22 -1.16 16 6 C -0.15 -3.04 4.61 -19.85 -0.09 -3.13 16 7 C 0.17 3.38 3.07 29.85 0.09 3.47 16 8 H 0.12 2.06 8.05 -2.39 -0.02 2.04 16 9 O -0.56 -12.33 12.38 -148.98 -1.84 -14.17 16 10 C -0.11 -2.59 2.13 -10.71 -0.02 -2.61 16 11 C -0.10 -2.84 4.17 30.65 0.13 -2.71 16 12 C 0.07 2.64 5.29 86.33 0.46 3.09 16 13 N -0.54 -23.82 4.65 -900.96 -4.19 -28.01 16 14 C 0.21 11.39 4.72 85.56 0.40 11.79 16 15 C -0.52 -30.00 8.43 25.60 0.22 -29.78 16 16 H 0.06 3.63 7.12 -2.91 -0.02 3.61 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 19 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 C 0.05 1.87 5.46 86.32 0.47 2.34 16 24 C -0.09 -2.55 5.26 30.64 0.16 -2.39 16 25 C -0.08 -1.47 7.28 22.25 0.16 -1.31 16 26 C -0.21 -3.99 9.04 22.37 0.20 -3.79 16 27 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 28 H 0.06 0.63 7.66 -2.38 -0.02 0.61 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.38 7.00 5.62 -74.06 -0.42 6.58 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.94 6.67 -2.39 -0.02 1.92 16 35 H 0.08 1.94 6.12 -2.39 -0.01 1.92 16 36 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 2.57 6.70 -2.39 -0.02 2.55 16 38 H -0.04 -2.64 8.12 -2.39 -0.02 -2.65 16 39 H 0.00 0.07 7.99 -2.38 -0.02 0.05 16 40 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 2.23 8.01 -2.39 -0.02 2.21 16 43 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.07 2.07 7.61 -2.39 -0.02 2.05 16 45 H 0.14 2.21 6.25 -2.91 -0.02 2.20 16 46 H 0.14 2.11 6.30 -2.91 -0.02 2.10 16 Total: -1.00 -69.87 357.79 0.21 -69.66 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.55 Total: 15.58 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.34 Total: -25.04 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.90 Total: -85.05 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -2.81 Total: -21.71 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.87 0.21 -69.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291245902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.368 kcal (2) G-P(sol) polarization free energy of solvation -69.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds