Wall clock time and date at job start Tue Mar 31 2020 09:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47210 * 2 1 4 4 C 1.35908 * 117.00333 * 180.02562 * 3 2 1 5 5 C 1.38724 * 120.05876 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94586 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.05090 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.93709 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47525 * 339.99738 * 8 7 6 10 10 O 1.42905 * 109.46559 * 219.99653 * 8 7 6 11 11 C 1.52996 * 109.46916 * 100.00279 * 8 7 6 12 12 C 1.53037 * 109.45937 * 300.01889 * 11 8 7 13 13 C 1.53198 * 109.31453 * 178.60397 * 12 11 8 14 14 N 1.46926 * 108.76343 * 54.65721 * 13 12 11 15 15 C 1.36935 * 120.62884 * 126.41087 * 14 13 12 16 16 H 1.07997 * 119.99754 * 331.81952 * 15 14 13 17 17 C 1.38809 * 120.00183 * 151.82745 * 15 14 13 18 18 N 1.31621 * 119.99877 * 343.06728 * 17 15 14 19 19 Si 1.86800 * 120.00155 * 163.06988 * 17 15 14 20 20 H 1.48503 * 109.47101 * 89.99679 * 19 17 15 21 21 H 1.48504 * 109.46907 * 209.99676 * 19 17 15 22 22 H 1.48495 * 109.47183 * 329.99992 * 19 17 15 23 23 C 1.46923 * 118.73726 * 306.38151 * 14 13 12 24 24 C 1.53040 * 109.45933 * 179.97438 * 11 8 7 25 25 C 1.38257 * 120.11584 * 0.02562 * 7 6 5 26 26 C 1.38141 * 120.05798 * 359.97438 * 25 7 6 27 27 H 1.09005 * 109.47275 * 59.99935 * 1 2 3 28 28 H 1.09001 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47309 * 300.00517 * 1 2 3 30 30 H 1.09003 * 109.47055 * 240.00147 * 2 1 3 31 31 H 1.08991 * 109.47390 * 120.00078 * 2 1 3 32 32 H 1.08011 * 120.02749 * 359.95474 * 5 4 3 33 33 H 1.08000 * 119.97189 * 179.72515 * 6 5 4 34 34 H 0.96693 * 114.00119 * 300.00164 * 10 8 7 35 35 H 1.08996 * 109.46458 * 59.99742 * 11 8 7 36 36 H 1.08997 * 109.50375 * 298.56971 * 12 11 8 37 37 H 1.09000 * 109.49490 * 58.66787 * 12 11 8 38 38 H 1.09007 * 109.59465 * 294.87009 * 13 12 11 39 39 H 1.08995 * 109.70145 * 174.50745 * 13 12 11 40 40 H 0.96995 * 120.00047 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.59327 * 293.82534 * 23 14 13 42 42 H 1.09007 * 109.70237 * 173.46049 * 23 14 13 43 43 H 1.09001 * 109.49649 * 301.33502 * 24 11 8 44 44 H 1.09001 * 109.49781 * 61.43371 * 24 11 8 45 45 H 1.08007 * 119.97288 * 180.02562 * 25 7 6 46 46 H 1.07996 * 120.03257 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8851 2.8068 -0.0011 6 6 5.2550 2.9851 -0.0011 7 6 6.0961 1.8878 0.0000 8 6 7.5902 2.0853 0.0005 9 1 7.8240 3.0900 -0.3515 10 8 8.1980 1.1239 -0.8646 11 6 8.1279 1.9047 1.4214 12 6 7.4763 2.9339 2.3478 13 6 7.9908 2.7275 3.7760 14 7 9.4592 2.7741 3.7608 15 6 10.1389 3.6258 4.5901 16 1 9.6784 4.5482 4.9117 17 6 11.4197 3.3036 5.0173 18 7 11.8556 2.0659 4.9152 19 14 12.5246 4.6266 5.7372 20 1 12.3203 4.6967 7.2065 21 1 13.9437 4.2966 5.4499 22 1 12.1881 5.9382 5.1277 23 6 10.1845 1.8890 2.8392 24 6 9.6452 2.1047 1.4216 25 6 5.5689 0.6097 0.0005 26 6 4.1998 0.4259 0.0006 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.2284 3.6643 -0.0019 33 1 5.6692 3.9825 -0.0061 34 1 8.0314 0.2058 -0.6110 35 1 7.8940 0.8999 1.7733 36 1 7.7305 3.9389 2.0111 37 1 6.3940 2.8063 2.3292 38 1 7.6597 1.7576 4.1472 39 1 7.6068 3.5167 4.4225 40 1 12.7507 1.8408 5.2134 41 1 10.0324 0.8507 3.1340 42 1 11.2486 2.1241 2.8650 43 1 10.1068 1.3868 0.7437 44 1 9.8786 3.1177 1.0938 45 1 6.2281 -0.2459 0.0018 46 1 3.7884 -0.5726 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291946355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:47 Heat of formation + Delta-G solvation = -55.380196 kcal Electronic energy + Delta-G solvation = -25294.583493 eV Core-core repulsion = 21763.488448 eV Total energy + Delta-G solvation = -3531.095045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.44508 -38.99374 -37.17070 -35.99313 -33.16682 -32.24601 -31.16117 -30.73560 -30.10210 -29.20382 -26.22502 -24.36836 -24.00514 -22.46441 -21.94556 -21.55352 -20.61266 -19.10172 -18.51106 -17.05776 -16.56948 -16.35129 -16.13799 -15.31873 -14.85328 -14.49386 -14.43044 -13.93999 -13.65542 -13.58599 -13.50890 -13.24111 -13.04129 -12.96651 -12.64638 -12.57934 -12.21114 -11.97818 -11.93080 -11.60107 -11.24459 -11.08812 -10.90069 -10.88161 -10.65107 -10.53894 -10.31262 -10.17733 -9.94500 -9.80476 -9.43743 -9.25083 -9.05705 -8.42944 -8.12437 -6.60979 -5.74617 -3.16645 1.26663 1.33535 2.98455 3.39632 3.46556 3.49255 3.65796 4.53180 4.56248 4.58259 4.60821 4.72726 4.74683 4.80074 4.90902 5.13206 5.21744 5.25641 5.39395 5.39905 5.43187 5.46831 5.57126 5.64075 5.68329 5.76493 5.83650 5.97892 6.12207 6.16011 6.21681 6.27475 6.41217 6.54605 6.60075 6.67419 6.72346 6.76993 6.86254 6.91532 7.03768 7.26636 7.44340 7.71698 7.73494 7.83552 8.50122 9.26358 9.90194 10.47422 11.33823 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.002939 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.960674 B = 9524.537871 C = 9951.248014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.122 3.878 5 C -0.150 4.150 6 C -0.068 4.068 7 C -0.136 4.136 8 C 0.151 3.849 9 H 0.103 0.897 10 O -0.555 6.555 11 C -0.101 4.101 12 C -0.125 4.125 13 C 0.147 3.853 14 N -0.592 5.592 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.171 3.829 24 C -0.130 4.130 25 C -0.074 4.074 26 C -0.205 4.205 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.369 0.631 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.014 0.986 39 H 0.052 0.948 40 H 0.253 0.747 41 H 0.014 0.986 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.122 0.878 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.514 -4.735 -12.260 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.077 3.923 5 C -0.168 4.168 6 C -0.086 4.086 7 C -0.136 4.136 8 C 0.092 3.908 9 H 0.120 0.880 10 O -0.360 6.360 11 C -0.119 4.119 12 C -0.165 4.165 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.046 3.954 24 C -0.169 4.169 25 C -0.092 4.092 26 C -0.224 4.224 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.216 0.784 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.139 0.861 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.300 -4.117 -12.497 22.539 hybrid contribution 0.416 -0.186 0.791 0.912 sum -17.885 -4.303 -11.706 21.804 Atomic orbital electron populations 1.21773 0.92812 1.02809 1.03507 1.22758 0.95796 0.82143 1.01397 1.86054 1.19247 1.29146 1.88854 1.18964 0.82057 0.94214 0.97050 1.20397 0.95157 0.94741 1.06531 1.20829 0.91945 0.98836 0.97027 1.20554 0.97204 0.93388 1.02466 1.20999 0.85809 0.93129 0.90822 0.87971 1.86595 1.76483 1.18398 1.54540 1.21703 0.97354 0.99842 0.93050 1.22013 0.98137 0.98371 0.97935 1.20866 0.86053 0.98060 0.92981 1.44062 0.99274 1.45862 1.42336 1.19172 0.97937 0.98130 1.22766 0.91837 1.25038 0.99709 0.95734 0.99276 1.70034 1.17999 1.16079 1.50727 0.86323 0.80162 0.81579 0.78874 1.21455 1.21574 1.20514 1.20763 0.97910 0.92236 0.84529 1.22168 0.93296 1.00848 1.00638 1.20638 0.94229 0.96737 0.97560 1.21140 0.94211 0.97876 1.09142 0.91583 0.90414 0.91480 0.92142 0.92010 0.85302 0.85184 0.78387 0.91848 0.92374 0.92961 0.96833 0.92983 0.93704 0.96754 0.89584 0.92749 0.92806 0.86054 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.15 0.38 -0.52 16 2 C 0.05 0.43 5.46 37.15 0.20 0.63 16 3 O -0.32 -3.58 10.14 -19.45 -0.20 -3.78 16 4 C 0.12 1.47 6.69 -39.22 -0.26 1.20 16 5 C -0.15 -1.78 9.99 -39.44 -0.39 -2.18 16 6 C -0.07 -0.83 8.66 -39.61 -0.34 -1.17 16 7 C -0.14 -1.73 4.07 -104.60 -0.43 -2.16 16 8 C 0.15 2.12 2.79 -27.88 -0.08 2.04 16 9 H 0.10 1.47 8.00 -51.93 -0.42 1.05 16 10 O -0.56 -7.69 12.49 -35.23 -0.44 -8.13 16 11 C -0.10 -1.65 1.91 -90.58 -0.17 -1.82 16 12 C -0.13 -2.17 4.99 -26.61 -0.13 -2.31 16 13 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 14 N -0.59 -15.07 2.99 -172.32 -0.52 -15.58 16 15 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 16 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 18 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 19 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 24 C -0.13 -2.52 5.23 -26.61 -0.14 -2.66 16 25 C -0.07 -0.86 9.31 -39.61 -0.37 -1.23 16 26 C -0.20 -2.29 9.04 -39.43 -0.36 -2.65 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.13 1.41 8.03 -52.49 -0.42 0.98 16 34 H 0.37 3.95 7.50 45.56 0.34 4.29 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.82 6.55 -51.93 -0.34 0.48 16 38 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 43 H 0.05 0.99 7.64 -51.93 -0.40 0.59 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.12 1.19 6.78 -52.48 -0.36 0.84 16 46 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -31.69 361.97 -9.26 -40.95 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.80 Total: 2.91 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.36 Total: -12.78 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.11 Total: -41.55 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.64 Total: -11.90 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.69 -9.26 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291946355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.425 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds