Wall clock time and date at job start Tue Mar 31 2020 09:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47210 * 2 1 4 4 C 1.35908 * 117.00333 * 180.02562 * 3 2 1 5 5 C 1.38724 * 120.05876 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94586 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.05090 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.93709 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47525 * 339.99738 * 8 7 6 10 10 O 1.42905 * 109.46559 * 219.99653 * 8 7 6 11 11 C 1.52996 * 109.46916 * 100.00279 * 8 7 6 12 12 C 1.53037 * 109.45937 * 300.01889 * 11 8 7 13 13 C 1.53198 * 109.31453 * 178.60397 * 12 11 8 14 14 N 1.46926 * 108.76343 * 54.65721 * 13 12 11 15 15 C 1.36935 * 120.62884 * 126.41087 * 14 13 12 16 16 H 1.07997 * 119.99754 * 331.81952 * 15 14 13 17 17 C 1.38809 * 120.00183 * 151.82745 * 15 14 13 18 18 N 1.31621 * 119.99877 * 343.06728 * 17 15 14 19 19 Si 1.86800 * 120.00155 * 163.06988 * 17 15 14 20 20 H 1.48503 * 109.47101 * 89.99679 * 19 17 15 21 21 H 1.48504 * 109.46907 * 209.99676 * 19 17 15 22 22 H 1.48495 * 109.47183 * 329.99992 * 19 17 15 23 23 C 1.46923 * 118.73726 * 306.38151 * 14 13 12 24 24 C 1.53040 * 109.45933 * 179.97438 * 11 8 7 25 25 C 1.38257 * 120.11584 * 0.02562 * 7 6 5 26 26 C 1.38141 * 120.05798 * 359.97438 * 25 7 6 27 27 H 1.09005 * 109.47275 * 59.99935 * 1 2 3 28 28 H 1.09001 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47309 * 300.00517 * 1 2 3 30 30 H 1.09003 * 109.47055 * 240.00147 * 2 1 3 31 31 H 1.08991 * 109.47390 * 120.00078 * 2 1 3 32 32 H 1.08011 * 120.02749 * 359.95474 * 5 4 3 33 33 H 1.08000 * 119.97189 * 179.72515 * 6 5 4 34 34 H 0.96693 * 114.00119 * 300.00164 * 10 8 7 35 35 H 1.08996 * 109.46458 * 59.99742 * 11 8 7 36 36 H 1.08997 * 109.50375 * 298.56971 * 12 11 8 37 37 H 1.09000 * 109.49490 * 58.66787 * 12 11 8 38 38 H 1.09007 * 109.59465 * 294.87009 * 13 12 11 39 39 H 1.08995 * 109.70145 * 174.50745 * 13 12 11 40 40 H 0.96995 * 120.00047 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.59327 * 293.82534 * 23 14 13 42 42 H 1.09007 * 109.70237 * 173.46049 * 23 14 13 43 43 H 1.09001 * 109.49649 * 301.33502 * 24 11 8 44 44 H 1.09001 * 109.49781 * 61.43371 * 24 11 8 45 45 H 1.08007 * 119.97288 * 180.02562 * 25 7 6 46 46 H 1.07996 * 120.03257 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8851 2.8068 -0.0011 6 6 5.2550 2.9851 -0.0011 7 6 6.0961 1.8878 0.0000 8 6 7.5902 2.0853 0.0005 9 1 7.8240 3.0900 -0.3515 10 8 8.1980 1.1239 -0.8646 11 6 8.1279 1.9047 1.4214 12 6 7.4763 2.9339 2.3478 13 6 7.9908 2.7275 3.7760 14 7 9.4592 2.7741 3.7608 15 6 10.1389 3.6258 4.5901 16 1 9.6784 4.5482 4.9117 17 6 11.4197 3.3036 5.0173 18 7 11.8556 2.0659 4.9152 19 14 12.5246 4.6266 5.7372 20 1 12.3203 4.6967 7.2065 21 1 13.9437 4.2966 5.4499 22 1 12.1881 5.9382 5.1277 23 6 10.1845 1.8890 2.8392 24 6 9.6452 2.1047 1.4216 25 6 5.5689 0.6097 0.0005 26 6 4.1998 0.4259 0.0006 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.2284 3.6643 -0.0019 33 1 5.6692 3.9825 -0.0061 34 1 8.0314 0.2058 -0.6110 35 1 7.8940 0.8999 1.7733 36 1 7.7305 3.9389 2.0111 37 1 6.3940 2.8063 2.3292 38 1 7.6597 1.7576 4.1472 39 1 7.6068 3.5167 4.4225 40 1 12.7507 1.8408 5.2134 41 1 10.0324 0.8507 3.1340 42 1 11.2486 2.1241 2.8650 43 1 10.1068 1.3868 0.7437 44 1 9.8786 3.1177 1.0938 45 1 6.2281 -0.2459 0.0018 46 1 3.7884 -0.5726 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291946355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:46 Heat of formation + Delta-G solvation = -74.484978 kcal Electronic energy + Delta-G solvation = -25295.411938 eV Core-core repulsion = 21763.488448 eV Total energy + Delta-G solvation = -3531.923491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33974 -40.10222 -38.48064 -37.18918 -34.91075 -33.00061 -32.51458 -31.93320 -31.53117 -30.53091 -27.79235 -25.69190 -24.94005 -23.86910 -23.37316 -22.61687 -21.75419 -20.72346 -19.31469 -18.77104 -17.84459 -17.05089 -17.02279 -16.91714 -16.26607 -15.86472 -15.40507 -15.34207 -15.23730 -14.80376 -14.48365 -14.40065 -14.35514 -14.07399 -13.81812 -13.69296 -13.27993 -13.17655 -13.04310 -12.84034 -12.73491 -12.58439 -12.50412 -12.15689 -12.05625 -11.84105 -11.78245 -11.66229 -11.54242 -11.36700 -11.05144 -10.69885 -10.53045 -9.92991 -9.03341 -8.66358 -7.87050 -5.32515 0.40373 0.43261 1.45561 1.47216 1.57142 2.28052 2.51256 2.76245 3.27162 3.55980 3.66913 3.72923 3.81363 3.95670 4.02880 4.06239 4.07015 4.17479 4.32416 4.37392 4.42082 4.46809 4.54717 4.59587 4.65539 4.76858 4.81979 4.90208 4.94607 4.95983 5.02398 5.09373 5.19358 5.20781 5.30384 5.31258 5.32817 5.39739 5.42277 5.54373 5.64937 5.69845 5.79133 5.82567 6.39890 6.47787 6.81477 7.15627 7.87547 8.39301 9.19094 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.002939 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.960674 B = 9524.537871 C = 9951.248014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.114 3.886 5 C -0.162 4.162 6 C -0.073 4.073 7 C -0.149 4.149 8 C 0.167 3.833 9 H 0.100 0.900 10 O -0.564 6.564 11 C -0.092 4.092 12 C -0.110 4.110 13 C 0.141 3.859 14 N -0.611 5.611 15 C -0.263 4.263 16 H 0.065 0.935 17 C -0.053 4.053 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.271 1.271 23 C 0.178 3.822 24 C -0.116 4.116 25 C -0.078 4.078 26 C -0.208 4.208 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.383 0.617 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.008 0.992 39 H 0.050 0.950 40 H 0.250 0.750 41 H -0.007 1.007 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.139 0.861 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.091 -4.791 -13.284 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.069 3.931 5 C -0.180 4.180 6 C -0.092 4.092 7 C -0.150 4.150 8 C 0.108 3.892 9 H 0.118 0.882 10 O -0.371 6.371 11 C -0.110 4.110 12 C -0.149 4.149 13 C 0.016 3.984 14 N -0.334 5.334 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.248 4.248 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.052 3.948 24 C -0.155 4.155 25 C -0.096 4.096 26 C -0.226 4.226 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.011 0.989 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.157 0.843 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.915 -4.178 -13.532 24.437 hybrid contribution 0.803 -0.243 1.124 1.402 sum -19.112 -4.421 -12.408 23.212 Atomic orbital electron populations 1.21804 0.91523 1.04143 1.03161 1.23044 0.96890 0.80874 1.02173 1.86049 1.18869 1.31207 1.88686 1.19185 0.82646 0.94564 0.96696 1.20590 0.95331 0.95360 1.06732 1.20983 0.92087 0.99265 0.96816 1.20453 0.96232 0.94173 1.04145 1.20686 0.86645 0.93212 0.88658 0.88232 1.86571 1.76652 1.19479 1.54436 1.21596 0.94960 0.99533 0.94959 1.21826 0.99301 0.98604 0.95140 1.21035 0.83910 0.97679 0.95768 1.44333 1.00967 1.45691 1.42450 1.19510 0.98520 0.98600 1.22693 0.91751 1.25813 1.01049 0.97644 1.00280 1.70188 1.18037 1.17878 1.52108 0.85291 0.77897 0.79265 0.78094 1.21068 1.21807 1.19552 1.20576 0.96212 0.90770 0.87238 1.21943 0.95597 1.00707 0.97262 1.20899 0.94840 0.96967 0.96893 1.21381 0.93984 0.98747 1.08521 0.91759 0.88238 0.91990 0.91081 0.91425 0.84397 0.84217 0.76750 0.91751 0.92461 0.90684 0.97380 0.93134 0.94131 0.98880 0.93179 0.91451 0.93538 0.84309 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.04 0.61 5.46 71.98 0.39 1.00 16 3 O -0.33 -6.92 10.14 -92.51 -0.94 -7.86 16 4 C 0.11 2.52 6.69 22.51 0.15 2.67 16 5 C -0.16 -3.57 9.99 22.36 0.22 -3.34 16 6 C -0.07 -1.64 8.66 22.25 0.19 -1.45 16 7 C -0.15 -3.48 4.07 -19.85 -0.08 -3.56 16 8 C 0.17 4.31 2.79 29.85 0.08 4.40 16 9 H 0.10 2.65 8.00 -2.39 -0.02 2.63 16 10 O -0.56 -14.28 12.49 -148.98 -1.86 -16.15 16 11 C -0.09 -2.87 1.91 -10.77 -0.02 -2.89 16 12 C -0.11 -3.65 4.99 30.67 0.15 -3.49 16 13 C 0.14 6.01 6.52 86.36 0.56 6.57 16 14 N -0.61 -31.51 2.99 -699.08 -2.09 -33.60 16 15 C -0.26 -14.85 9.58 84.03 0.81 -14.05 16 16 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16 17 C -0.05 -3.01 4.92 84.86 0.42 -2.60 16 18 N -0.94 -56.58 11.19 21.65 0.24 -56.33 16 19 Si 0.97 45.71 29.59 68.60 2.03 47.74 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.18 8.80 5.30 86.36 0.46 9.26 16 24 C -0.12 -4.44 5.23 30.67 0.16 -4.28 16 25 C -0.08 -1.63 9.31 22.25 0.21 -1.42 16 26 C -0.21 -4.12 9.04 22.37 0.20 -3.92 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 32 H 0.14 2.67 8.06 -2.90 -0.02 2.65 16 33 H 0.14 2.74 8.03 -2.91 -0.02 2.71 16 34 H 0.38 7.17 7.50 -74.06 -0.56 6.62 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 2.19 6.55 -2.39 -0.02 2.17 16 38 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 43 H 0.07 2.38 7.64 -2.39 -0.02 2.37 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.14 2.30 6.78 -2.91 -0.02 2.28 16 46 H 0.15 2.17 6.30 -2.91 -0.02 2.16 16 Total: -1.00 -68.62 361.97 2.44 -66.19 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.41 Total: 17.83 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.65 Total: -17.83 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -1.85 Total: -89.93 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -2.80 Total: -24.00 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.62 2.44 -66.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291946355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.298 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds