Wall clock time and date at job start Tue Mar 31 2020 09:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42891 * 109.47163 * 2 1 4 4 C 1.35907 * 117.00171 * 179.97438 * 3 2 1 5 5 C 1.38730 * 120.05695 * 179.97438 * 4 3 2 6 6 C 1.38146 * 119.94275 * 179.97438 * 5 4 3 7 7 C 1.38266 * 120.05758 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.94641 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47186 * 25.00554 * 8 7 6 10 10 O 1.42904 * 109.47142 * 144.99869 * 8 7 6 11 11 C 1.52995 * 109.47466 * 265.00206 * 8 7 6 12 12 C 1.53041 * 109.45966 * 300.07117 * 11 8 7 13 13 C 1.53194 * 109.31317 * 178.61341 * 12 11 8 14 14 N 1.46930 * 108.77646 * 54.63090 * 13 12 11 15 15 C 1.36930 * 120.63064 * 126.41386 * 14 13 12 16 16 H 1.08008 * 120.00387 * 207.67002 * 15 14 13 17 17 C 1.38814 * 120.00401 * 27.66470 * 15 14 13 18 18 N 1.31620 * 119.99387 * 17.36554 * 17 15 14 19 19 Si 1.86798 * 120.00517 * 197.36733 * 17 15 14 20 20 H 1.48497 * 109.47084 * 59.99704 * 19 17 15 21 21 H 1.48498 * 109.47077 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46912 * 300.00177 * 19 17 15 23 23 C 1.46924 * 118.73675 * 306.39688 * 14 13 12 24 24 C 1.53039 * 109.46329 * 179.97438 * 11 8 7 25 25 C 1.38273 * 120.10710 * 0.27743 * 7 6 5 26 26 C 1.38144 * 120.05788 * 359.44654 * 25 7 6 27 27 H 1.09000 * 109.47209 * 300.00064 * 1 2 3 28 28 H 1.09003 * 109.47280 * 59.99846 * 1 2 3 29 29 H 1.09001 * 109.47491 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47209 * 239.99936 * 2 1 3 31 31 H 1.09003 * 109.47280 * 120.00154 * 2 1 3 32 32 H 1.08003 * 120.02797 * 359.95972 * 5 4 3 33 33 H 1.08000 * 119.97252 * 180.02562 * 6 5 4 34 34 H 0.96709 * 113.99349 * 60.00625 * 10 8 7 35 35 H 1.09006 * 109.45803 * 60.02743 * 11 8 7 36 36 H 1.09000 * 109.49576 * 298.56271 * 12 11 8 37 37 H 1.08996 * 109.50227 * 58.65736 * 12 11 8 38 38 H 1.09004 * 109.58332 * 294.84901 * 13 12 11 39 39 H 1.08994 * 109.58701 * 174.41800 * 13 12 11 40 40 H 0.96997 * 119.99589 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.58602 * 293.81413 * 23 14 13 42 42 H 1.09004 * 109.58674 * 173.39684 * 23 14 13 43 43 H 1.09003 * 109.49661 * 301.34130 * 24 11 8 44 44 H 1.09006 * 109.49513 * 61.40173 * 24 11 8 45 45 H 1.08004 * 119.96864 * 179.70493 * 25 7 6 46 46 H 1.07995 * 120.02455 * 180.27622 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8067 0.0000 6 6 5.2550 2.9850 0.0011 7 6 6.0962 1.8877 0.0032 8 6 7.5902 2.0851 0.0038 9 1 7.8281 3.0567 0.4370 10 8 8.2065 1.0545 0.7786 11 6 8.1132 2.0252 -1.4327 12 6 7.7774 0.6617 -2.0411 13 6 8.2718 0.6179 -3.4904 14 7 9.7023 0.9529 -3.5124 15 6 10.6048 0.1191 -4.1167 16 1 11.6302 0.0965 -3.7779 17 6 10.2021 -0.6973 -5.1646 18 7 9.0795 -0.4430 -5.8030 19 14 11.2533 -2.1568 -5.6689 20 1 11.3903 -3.0884 -4.5206 21 1 10.6075 -2.8631 -6.8044 22 1 12.5974 -1.6795 -6.0821 23 6 10.1457 2.1997 -2.8741 24 6 9.6303 2.2264 -1.4318 25 6 5.5689 0.6095 -0.0015 26 6 4.1997 0.4258 0.0032 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2284 3.6642 -0.0014 33 1 5.6693 3.9824 0.0012 34 1 8.0369 0.1609 0.4501 35 1 7.6433 2.8118 -2.0233 36 1 8.2673 -0.1239 -1.4657 37 1 6.6983 0.5096 -2.0200 38 1 7.7177 1.3422 -4.0875 39 1 8.1246 -0.3827 -3.8966 40 1 8.7983 -1.0132 -6.5355 41 1 9.7445 3.0530 -3.4210 42 1 11.2349 2.2428 -2.8738 43 1 9.8696 3.1877 -0.9772 44 1 10.1030 1.4266 -0.8616 45 1 6.2280 -0.2461 -0.0046 46 1 3.7884 -0.5727 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291946356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:51 Heat of formation + Delta-G solvation = -71.772661 kcal Electronic energy + Delta-G solvation = -25535.894724 eV Core-core repulsion = 22004.088848 eV Total energy + Delta-G solvation = -3531.805876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40055 -40.19959 -38.43954 -37.13504 -34.73518 -33.05053 -32.44121 -32.01959 -31.39835 -30.70743 -27.82291 -25.84998 -25.05853 -23.79899 -23.34135 -22.62402 -21.72307 -20.53121 -19.33185 -18.69751 -17.95741 -17.04394 -17.00684 -16.84504 -16.37621 -15.92046 -15.61811 -15.32565 -15.10634 -14.79304 -14.52595 -14.48235 -14.35339 -14.08832 -13.77409 -13.66765 -13.27000 -13.21115 -12.91306 -12.75944 -12.65116 -12.58927 -12.51182 -12.30065 -12.00559 -11.97760 -11.69616 -11.63056 -11.54453 -11.41880 -11.02140 -10.67767 -10.51801 -9.91786 -9.03355 -8.66505 -7.86705 -5.31519 0.39684 0.42648 1.46360 1.48529 1.55574 2.26746 2.51665 2.75272 3.27168 3.59986 3.70368 3.72503 3.80455 3.94138 4.03409 4.04046 4.05803 4.16059 4.27160 4.35487 4.41998 4.45404 4.55287 4.60882 4.68036 4.76654 4.79773 4.89147 4.93061 4.95905 5.03033 5.10245 5.17237 5.20845 5.27383 5.30266 5.34779 5.40535 5.43015 5.55878 5.66162 5.66399 5.79483 5.82085 6.39521 6.45852 6.74048 7.15744 7.88131 8.39762 9.19120 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.003555 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.050566 B = 7874.488473 C = 8972.053654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.113 3.887 5 C -0.162 4.162 6 C -0.074 4.074 7 C -0.154 4.154 8 C 0.166 3.834 9 H 0.117 0.883 10 O -0.564 6.564 11 C -0.097 4.097 12 C -0.123 4.123 13 C 0.180 3.820 14 N -0.610 5.610 15 C -0.263 4.263 16 H 0.064 0.936 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.138 3.862 24 C -0.109 4.109 25 C -0.076 4.076 26 C -0.212 4.212 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.378 0.622 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.066 0.934 38 H -0.012 1.012 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.010 0.990 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.130 0.870 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 3.215 15.076 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.247 6.247 4 C 0.068 3.932 5 C -0.181 4.181 6 C -0.092 4.092 7 C -0.154 4.154 8 C 0.107 3.893 9 H 0.134 0.866 10 O -0.371 6.371 11 C -0.116 4.116 12 C -0.162 4.162 13 C 0.054 3.946 14 N -0.334 5.334 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.013 3.987 24 C -0.148 4.148 25 C -0.094 4.094 26 C -0.231 4.231 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.006 0.994 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.148 0.852 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.977 3.776 15.282 21.051 hybrid contribution 0.299 -1.463 -1.320 1.993 sum -13.678 2.313 13.962 19.682 Atomic orbital electron populations 1.21798 0.91319 1.04146 1.03246 1.23037 0.97025 0.80945 1.02031 1.86036 1.18847 1.31073 1.88709 1.19201 0.82593 0.94623 0.96753 1.20627 0.95530 0.95189 1.06727 1.21028 0.91965 0.99422 0.96821 1.20556 0.96797 0.93994 1.04088 1.20768 0.86224 0.92203 0.90082 0.86569 1.86528 1.76075 1.18544 1.55979 1.21604 0.96279 0.97795 0.95938 1.22087 0.99704 0.97006 0.97369 1.20530 0.83129 0.98446 0.92459 1.44321 1.03706 1.20841 1.64484 1.19488 0.93238 1.16470 1.10126 0.91781 1.25786 0.99246 1.03520 0.96135 1.70196 1.25767 1.39324 1.22886 0.85351 0.78285 0.79739 0.77151 1.20332 1.22006 1.20217 1.21087 0.97478 0.87463 0.92666 1.21816 0.94871 1.01677 0.96454 1.20883 0.94682 0.97179 0.96700 1.21374 0.94104 0.98779 1.08844 0.91527 0.91965 0.88314 0.91801 0.91124 0.84072 0.83235 0.77246 0.91443 0.92661 0.91602 0.99402 0.93055 0.94194 0.97184 0.93118 0.90346 0.92481 0.85218 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.04 0.72 5.46 71.98 0.39 1.11 16 3 O -0.33 -7.58 10.14 -92.50 -0.94 -8.52 16 4 C 0.11 2.76 6.69 22.51 0.15 2.91 16 5 C -0.16 -3.74 9.99 22.37 0.22 -3.52 16 6 C -0.07 -1.67 9.67 22.25 0.22 -1.46 16 7 C -0.15 -3.80 4.62 -19.85 -0.09 -3.89 16 8 C 0.17 4.23 3.06 29.84 0.09 4.32 16 9 H 0.12 2.61 8.05 -2.39 -0.02 2.59 16 10 O -0.56 -15.23 12.45 -148.98 -1.86 -17.08 16 11 C -0.10 -3.03 2.03 -10.77 -0.02 -3.05 16 12 C -0.12 -4.45 4.19 30.67 0.13 -4.33 16 13 C 0.18 8.79 5.31 86.36 0.46 9.25 16 14 N -0.61 -31.17 3.00 -699.10 -2.09 -33.26 16 15 C -0.26 -14.73 9.59 84.04 0.81 -13.93 16 16 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 17 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 18 N -0.94 -56.15 11.19 21.65 0.24 -55.91 16 19 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 C 0.14 5.84 6.51 86.36 0.56 6.41 16 24 C -0.11 -3.64 5.20 30.67 0.16 -3.48 16 25 C -0.08 -1.87 7.20 22.26 0.16 -1.71 16 26 C -0.21 -4.96 9.04 22.37 0.20 -4.75 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 31 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 32 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.38 9.17 5.71 -74.05 -0.42 8.74 16 35 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.05 1.97 6.85 -2.39 -0.02 1.96 16 37 H 0.07 2.22 5.79 -2.39 -0.01 2.21 16 38 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 39 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.06 2.01 7.73 -2.38 -0.02 2.00 16 45 H 0.13 2.90 6.21 -2.91 -0.02 2.88 16 46 H 0.14 2.71 6.30 -2.91 -0.02 2.69 16 Total: -1.00 -67.58 356.66 2.53 -65.05 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.55 Total: 22.03 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.59 Total: -19.64 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -1.85 Total: -89.17 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -2.79 Total: -25.60 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -67.58 2.53 -65.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291946356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.723 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds