Wall clock time and date at job start Tue Mar 31 2020 09:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00016 * 2 1 4 4 N 1.46905 * 109.46969 * 124.36906 * 3 2 1 5 5 C 1.46897 * 110.99648 * 199.67623 * 4 3 2 6 6 C 1.50695 * 109.47763 * 66.04210 * 5 4 3 7 7 H 1.08004 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00459 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99640 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00114 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47242 * 60.00166 * 10 8 6 12 12 H 1.48501 * 109.47007 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47264 * 299.99887 * 10 8 6 14 14 C 1.46893 * 111.00418 * 75.71515 * 4 3 2 15 15 C 1.52992 * 109.47369 * 200.10585 * 14 4 3 16 16 O 1.42896 * 109.47331 * 64.99580 * 15 14 4 17 17 C 1.35982 * 117.00445 * 179.40153 * 16 15 14 18 18 C 1.38697 * 120.00383 * 180.02562 * 17 16 15 19 19 C 1.38131 * 120.00379 * 180.02562 * 18 17 16 20 20 C 1.38701 * 119.99597 * 359.97438 * 19 18 17 21 21 O 1.35984 * 119.99686 * 179.97438 * 20 19 18 22 22 C 1.42897 * 116.99836 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47251 * 180.02562 * 22 21 20 24 24 C 1.38694 * 120.00381 * 0.26173 * 20 19 18 25 25 C 1.38132 * 119.99601 * 359.48695 * 24 20 19 26 26 H 1.07998 * 119.99468 * 359.97438 * 1 2 3 27 27 H 1.07993 * 120.00093 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99962 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46954 * 4.36783 * 3 2 1 30 30 H 1.08997 * 109.47150 * 244.35948 * 3 2 1 31 31 H 1.09008 * 109.47206 * 186.04336 * 5 4 3 32 32 H 1.09001 * 109.47171 * 306.03650 * 5 4 3 33 33 H 0.97008 * 119.99776 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.46695 * 80.10524 * 14 4 3 35 35 H 1.08998 * 109.47437 * 320.10644 * 14 4 3 36 36 H 1.09007 * 109.47093 * 305.00085 * 15 14 4 37 37 H 1.08997 * 109.47790 * 184.99966 * 15 14 4 38 38 H 1.08005 * 119.99716 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.00198 * 179.97438 * 19 18 17 40 40 H 1.08993 * 109.47502 * 300.00335 * 22 21 20 41 41 H 1.09002 * 109.46886 * 60.01139 * 22 21 20 42 42 H 1.08998 * 109.47634 * 180.02562 * 23 22 21 43 43 H 1.09009 * 109.46907 * 300.00581 * 23 22 21 44 44 H 1.08998 * 109.47205 * 60.00197 * 23 22 21 45 45 H 1.07996 * 120.00238 * 179.72285 * 24 20 19 46 46 H 1.08000 * 119.99874 * 180.22988 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9855 1.3382 1.1432 5 6 3.3841 2.7166 1.4583 6 6 2.1839 3.4883 1.9430 7 1 1.2212 3.0035 2.0100 8 6 2.3147 4.8136 2.3000 9 7 3.4869 5.4041 2.2180 10 14 0.8268 5.7704 2.9002 11 1 0.2807 5.1226 4.1198 12 1 1.2299 7.1637 3.2188 13 1 -0.2127 5.7855 1.8399 14 6 4.1615 0.4935 0.8959 15 6 4.8284 0.1449 2.2279 16 8 3.9421 -0.6599 3.0081 17 6 4.3899 -1.0697 4.2250 18 6 3.5809 -1.8540 5.0337 19 6 4.0355 -2.2697 6.2700 20 6 5.3014 -1.9033 6.7024 21 8 5.7488 -2.3121 7.9197 22 6 7.0624 -1.8982 8.3006 23 6 7.3886 -2.4506 9.6896 24 6 6.1086 -1.1149 5.8959 25 6 5.6559 -0.7035 4.6574 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3578 2.1321 0.0783 30 1 2.6303 1.3974 -0.9264 31 1 4.1473 2.7053 2.2365 32 1 3.7849 3.1925 0.5633 33 1 3.5790 6.3365 2.4696 34 1 4.8691 1.0317 0.2651 35 1 3.8515 -0.4230 0.3940 36 1 5.0584 1.0622 2.7702 37 1 5.7495 -0.4066 2.0399 38 1 2.5950 -2.1390 4.6970 39 1 3.4053 -2.8801 6.8998 40 1 7.7864 -2.2780 7.5798 41 1 7.1082 -0.8093 8.3225 42 1 8.3904 -2.1345 9.9804 43 1 6.6645 -2.0711 10.4108 44 1 7.3428 -3.5394 9.6676 45 1 7.0925 -0.8258 6.2345 46 1 6.2859 -0.0927 4.0278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292231507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:57 Heat of formation + Delta-G solvation = -26.344455 kcal Electronic energy + Delta-G solvation = -24560.473018 eV Core-core repulsion = 21030.637057 eV Total energy + Delta-G solvation = -3529.835961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25534 -38.91817 -37.22006 -36.04896 -33.18014 -32.43883 -31.92222 -30.99741 -29.64605 -28.08331 -26.98457 -24.59054 -24.13388 -23.09992 -21.70773 -21.51431 -20.18452 -19.04302 -18.40204 -17.53178 -16.48524 -16.19037 -16.13448 -15.62480 -14.96647 -14.76768 -14.63507 -14.07454 -13.88055 -13.81262 -13.51587 -13.35028 -13.28914 -12.87789 -12.62018 -12.27762 -12.22457 -12.04742 -11.88981 -11.70922 -11.48475 -11.35390 -11.00668 -10.85744 -10.75805 -10.64981 -10.40292 -10.22079 -10.09165 -9.74488 -9.22753 -8.96184 -8.84930 -8.43883 -7.52163 -7.23470 -6.03671 -4.04127 1.37045 1.64221 2.80973 3.17240 3.34161 3.37905 3.41849 3.62668 3.88457 4.43024 4.71059 4.71801 4.87379 4.89173 4.96056 5.03727 5.23085 5.31505 5.33017 5.39729 5.40865 5.54881 5.55317 5.58845 5.64453 5.72393 5.77994 5.80859 5.92795 5.98872 6.12398 6.21876 6.22195 6.33756 6.38757 6.50995 6.57521 6.72346 7.10731 7.20754 7.28635 7.35391 7.40903 7.77682 7.84378 8.06268 8.18590 8.53165 9.03432 9.60049 11.07253 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.003371 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.361488 B = 8305.014036 C = 9532.606816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C 0.084 3.916 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.054 3.946 15 C 0.069 3.931 16 O -0.291 6.291 17 C 0.112 3.888 18 C -0.116 4.116 19 C -0.112 4.112 20 C 0.079 3.921 21 O -0.320 6.320 22 C 0.055 3.945 23 C -0.151 4.151 24 C -0.167 4.167 25 C -0.174 4.174 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.030 0.970 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -15.531 5.830 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.146 4.146 3 C -0.044 4.044 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.075 4.075 15 C -0.007 4.007 16 O -0.204 6.204 17 C 0.066 3.934 18 C -0.135 4.135 19 C -0.130 4.130 20 C 0.034 3.966 21 O -0.235 6.235 22 C -0.021 4.021 23 C -0.208 4.208 24 C -0.185 4.185 25 C -0.193 4.193 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.143 0.857 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.318 -15.668 6.312 18.035 hybrid contribution 0.245 1.278 -0.349 1.348 sum 6.563 -14.390 5.963 16.903 Atomic orbital electron populations 1.23669 0.95980 1.01102 1.03321 1.22960 0.95851 0.98406 0.97343 1.21177 0.96146 0.95689 0.91349 1.62082 1.12919 1.13548 1.36390 1.19793 0.96828 0.81507 0.95201 1.21112 0.95397 0.94699 1.43169 0.91815 1.24971 0.96030 0.97688 0.95844 1.69943 1.22964 1.12193 1.48874 0.86577 0.82823 0.78712 0.79438 1.20111 1.21383 1.20251 1.22084 0.93807 0.98076 0.93525 1.22899 0.91269 0.93959 0.92532 1.86216 1.43139 1.65497 1.25498 1.19022 0.92394 0.95212 0.86816 1.20248 1.00291 0.99864 0.93082 1.20170 0.93877 1.02812 0.96158 1.18784 0.94332 0.97893 0.85551 1.86037 1.32944 1.72325 1.32201 1.22707 0.82855 0.99443 0.97056 1.21764 1.01938 1.02171 0.94951 1.20973 1.00424 1.01675 0.95464 1.21099 0.96367 1.04088 0.97721 0.88706 0.89352 0.88385 0.88991 0.95447 0.95181 0.99169 0.92908 0.93417 0.91084 0.91326 0.92924 0.84506 0.84906 0.92345 0.92176 0.90564 0.91557 0.91653 0.85685 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.15 14.32 29.01 0.42 -2.74 16 2 C -0.13 -2.13 9.32 -36.02 -0.34 -2.47 16 3 C 0.08 1.63 5.24 -4.97 -0.03 1.61 16 4 N -0.53 -11.19 4.29 -237.52 -1.02 -12.21 16 5 C 0.19 4.89 4.54 -4.98 -0.02 4.86 16 6 C -0.51 -14.14 8.23 -34.44 -0.28 -14.42 16 7 H 0.06 1.79 7.31 -52.48 -0.38 1.41 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 C 0.05 0.94 5.19 -3.83 -0.02 0.92 16 15 C 0.07 1.15 4.93 37.15 0.18 1.33 16 16 O -0.29 -5.22 10.08 -19.68 -0.20 -5.42 16 17 C 0.11 1.83 6.69 -39.24 -0.26 1.56 16 18 C -0.12 -1.72 9.98 -39.45 -0.39 -2.11 16 19 C -0.11 -1.51 9.98 -39.45 -0.39 -1.91 16 20 C 0.08 1.08 6.69 -39.24 -0.26 0.82 16 21 O -0.32 -4.04 10.14 -19.69 -0.20 -4.24 16 22 C 0.05 0.51 5.46 37.16 0.20 0.71 16 23 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 24 C -0.17 -2.23 9.03 -39.45 -0.36 -2.59 16 25 C -0.17 -2.57 9.03 -39.45 -0.36 -2.93 16 26 H 0.09 1.50 7.84 -52.49 -0.41 1.09 16 27 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.10 1.52 7.29 -52.49 -0.38 1.14 16 29 H 0.09 1.98 6.22 -51.93 -0.32 1.66 16 30 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 31 H 0.03 0.82 6.59 -51.92 -0.34 0.47 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.05 0.80 7.99 -51.93 -0.42 0.38 16 35 H 0.07 1.11 6.81 -51.93 -0.35 0.76 16 36 H 0.07 1.26 6.24 -51.92 -0.32 0.94 16 37 H 0.05 0.71 7.63 -51.93 -0.40 0.31 16 38 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 41 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.13 1.38 6.29 -52.49 -0.33 1.04 16 46 H 0.13 1.76 6.29 -52.49 -0.33 1.43 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -31.21 377.89 -8.93 -40.14 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.30 Total: 1.61 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.63 Total: -16.55 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.28 Total: -38.01 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.40 Total: -9.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.21 -8.93 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292231507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.794 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds