Wall clock time and date at job start Tue Mar 31 2020 08:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47445 * 2 1 4 4 C 1.46495 * 119.99804 * 85.43775 * 3 2 1 5 5 C 1.50704 * 109.47383 * 83.78718 * 4 3 2 6 6 H 1.08002 * 119.99407 * 359.14539 * 5 4 3 7 7 C 1.37870 * 120.00437 * 179.14125 * 5 4 3 8 8 N 1.31519 * 119.99816 * 4.57116 * 7 5 4 9 9 Si 1.86793 * 120.00328 * 184.56551 * 7 5 4 10 10 H 1.48504 * 109.46953 * 94.31265 * 9 7 5 11 11 H 1.48504 * 109.47622 * 214.31137 * 9 7 5 12 12 H 1.48499 * 109.47358 * 334.31725 * 9 7 5 13 13 C 1.34775 * 119.99963 * 265.43918 * 3 2 1 14 14 O 1.21284 * 120.00137 * 354.88121 * 13 3 2 15 15 C 1.50700 * 120.00088 * 174.88037 * 13 3 2 16 16 H 1.08999 * 109.46787 * 321.01420 * 15 13 3 17 17 O 1.42894 * 109.47197 * 201.01462 * 15 13 3 18 18 C 1.42908 * 114.00046 * 149.99827 * 17 15 13 19 19 C 1.52996 * 109.47156 * 149.99954 * 18 17 15 20 20 C 1.52998 * 109.47183 * 269.99912 * 18 17 15 21 21 C 1.50701 * 109.47062 * 81.01223 * 15 13 3 22 22 C 1.38231 * 119.99897 * 74.38316 * 21 15 13 23 23 C 1.38238 * 119.99925 * 179.78635 * 22 21 15 24 24 C 1.38235 * 119.99966 * 0.44264 * 23 22 21 25 25 C 1.38235 * 119.99736 * 359.80709 * 24 23 22 26 26 C 1.38236 * 119.99660 * 254.65300 * 21 15 13 27 27 H 1.09004 * 109.46776 * 64.95665 * 1 2 3 28 28 H 1.09000 * 109.47478 * 184.95801 * 1 2 3 29 29 H 1.09001 * 109.47042 * 304.96105 * 1 2 3 30 30 H 1.09003 * 109.47302 * 239.99830 * 2 1 3 31 31 H 1.09003 * 109.47343 * 119.99943 * 2 1 3 32 32 H 1.08997 * 109.47374 * 203.78540 * 4 3 2 33 33 H 1.09001 * 109.47637 * 323.78799 * 4 3 2 34 34 H 0.96999 * 120.00290 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46522 * 30.00056 * 18 17 15 36 36 H 1.09008 * 109.47271 * 59.99913 * 19 18 17 37 37 H 1.08993 * 109.47376 * 179.97438 * 19 18 17 38 38 H 1.09007 * 109.46946 * 300.00507 * 19 18 17 39 39 H 1.08997 * 109.47353 * 300.00289 * 20 18 17 40 40 H 1.09004 * 109.46744 * 59.99919 * 20 18 17 41 41 H 1.08998 * 109.46964 * 179.97438 * 20 18 17 42 42 H 1.07996 * 120.00136 * 359.97438 * 22 21 15 43 43 H 1.08003 * 119.99812 * 180.27058 * 23 22 21 44 44 H 1.07993 * 119.99866 * 179.83775 * 24 23 22 45 45 H 1.08004 * 119.99898 * 180.02562 * 25 24 23 46 46 H 1.07993 * 120.00836 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1674 2.1054 1.2647 5 6 3.4958 1.7608 1.8874 6 1 4.1564 1.0607 1.3975 7 6 3.8679 2.3393 3.0823 8 7 3.0277 3.1217 3.7239 9 14 5.5653 2.0118 3.7901 10 1 6.4939 3.0915 3.3690 11 1 5.4854 1.9779 5.2726 12 1 6.0661 0.7058 3.2913 13 6 2.3306 1.9856 -1.1635 14 8 2.2963 1.3584 -2.2010 15 6 2.7222 3.4408 -1.1754 16 1 2.1032 3.9894 -0.4656 17 8 2.5306 3.9749 -2.4868 18 6 2.2063 5.3666 -2.5059 19 6 2.7351 5.9958 -3.7964 20 6 0.6873 5.5373 -2.4405 21 6 4.1718 3.5740 -0.7855 22 6 5.1637 3.2236 -1.6823 23 6 6.4934 3.3500 -1.3263 24 6 6.8312 3.8181 -0.0702 25 6 5.8392 4.1636 0.8284 26 6 4.5094 4.0413 0.4709 27 1 -0.3633 0.4350 -0.9311 28 1 -0.3634 -1.0238 0.0888 29 1 -0.3633 0.5889 0.8422 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1217 3.1781 1.0768 33 1 1.3634 1.8208 1.9434 34 1 3.2892 3.5284 4.5647 35 1 2.6646 5.8581 -1.6477 36 1 2.2769 5.5041 -4.6547 37 1 2.4874 7.0571 -3.8113 38 1 3.8174 5.8740 -3.8431 39 1 0.2291 5.0456 -3.2986 40 1 0.3107 5.0890 -1.5211 41 1 0.4401 6.5988 -2.4546 42 1 4.8998 2.8540 -2.6621 43 1 7.2684 3.0804 -2.0285 44 1 7.8700 3.9144 0.2088 45 1 6.1030 4.5298 1.8096 46 1 3.7345 4.3114 1.1729 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292515615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:44 Heat of formation + Delta-G solvation = -59.064989 kcal Electronic energy + Delta-G solvation = -27073.792711 eV Core-core repulsion = 23542.537881 eV Total energy + Delta-G solvation = -3531.254830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -39.92821 -38.12142 -37.51254 -35.20813 -33.10623 -32.74604 -31.13224 -30.18527 -30.07354 -27.31438 -27.10200 -26.13779 -23.14063 -22.60867 -22.04568 -21.30998 -20.54415 -18.51690 -16.90411 -16.68015 -16.34465 -16.22985 -15.35203 -15.07793 -14.63001 -14.38377 -14.08860 -13.98674 -13.68368 -13.34084 -13.00878 -12.80172 -12.62134 -12.33286 -12.21883 -12.10603 -12.04688 -11.98473 -11.70604 -11.56468 -11.38731 -11.36149 -10.98050 -10.86369 -10.63839 -10.53717 -10.47127 -10.25899 -10.09740 -9.77217 -9.45405 -8.98333 -8.58345 -8.17464 -8.06100 -7.72316 -6.23202 -4.25808 1.90633 2.12559 3.18182 3.27244 3.30761 3.36584 3.47472 4.26822 4.32408 4.56301 5.04007 5.09266 5.14503 5.24995 5.34657 5.39087 5.46454 5.60840 5.65639 5.67628 5.70974 5.76138 5.83053 5.85272 5.89628 5.91287 5.98137 6.19446 6.26687 6.28211 6.28973 6.34361 6.42132 6.57207 6.65192 6.70364 6.73862 7.03734 7.07773 7.19710 7.22128 7.44957 7.61239 7.65559 7.73224 8.00177 8.31034 8.76737 9.00313 9.39139 10.82904 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.007357 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.751847 B = 3805.215225 C = 5069.712690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.592 5.592 4 C 0.232 3.768 5 C -0.519 4.519 6 H 0.060 0.940 7 C 0.073 3.927 8 N -0.891 5.891 9 Si 0.881 3.119 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.525 3.475 14 O -0.553 6.553 15 C 0.123 3.877 16 H 0.088 0.912 17 O -0.351 6.351 18 C 0.077 3.923 19 C -0.145 4.145 20 C -0.175 4.175 21 C -0.112 4.112 22 C -0.085 4.085 23 C -0.145 4.145 24 C -0.116 4.116 25 C -0.128 4.128 26 C -0.041 4.041 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 4.966 -7.096 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.324 5.324 4 C 0.112 3.888 5 C -0.557 4.557 6 H 0.079 0.921 7 C -0.130 4.130 8 N -0.530 5.530 9 Si 0.709 3.291 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.312 3.688 14 O -0.432 6.432 15 C 0.063 3.937 16 H 0.106 0.894 17 O -0.269 6.269 18 C 0.019 3.981 19 C -0.202 4.202 20 C -0.232 4.232 21 C -0.113 4.113 22 C -0.104 4.104 23 C -0.163 4.163 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.059 4.059 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.436 4.629 -7.623 8.929 hybrid contribution 0.967 -0.097 1.081 1.453 sum 0.531 4.532 -6.543 7.977 Atomic orbital electron populations 1.22112 0.96836 1.01341 1.01849 1.21232 0.93294 0.83577 1.02702 1.48129 1.62889 1.13740 1.07644 1.19571 0.97722 0.91997 0.79468 1.21397 1.02244 1.26258 1.05847 0.92135 1.24794 0.96995 0.95004 0.96205 1.69926 1.34759 1.31911 1.16377 0.86773 0.85016 0.79337 0.78019 1.19564 1.21428 1.19876 1.19954 0.76928 0.88193 0.83741 1.90595 1.54074 1.65968 1.32551 1.20695 0.93767 0.93596 0.85686 0.89435 1.88031 1.90208 1.23072 1.25610 1.22138 0.94466 0.82670 0.98804 1.21810 1.01829 0.99628 0.96945 1.22319 0.96500 1.01664 1.02763 1.19755 0.93738 1.02545 0.95294 1.20864 0.92277 0.97942 0.99281 1.20899 0.95862 1.02727 0.96783 1.21040 0.98687 0.99593 0.94138 1.21039 0.93064 1.01622 0.98923 1.21110 0.96771 0.94061 0.93982 0.93053 0.92324 0.92401 0.90843 0.90405 0.94626 0.94568 0.92558 0.91988 0.91936 0.91582 0.91961 0.91857 0.92422 0.91845 0.86324 0.87002 0.87194 0.86695 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.24 37.16 0.38 -2.24 16 2 C 0.12 2.18 6.23 -4.04 -0.03 2.15 16 3 N -0.59 -12.58 2.46 -175.06 -0.43 -13.01 16 4 C 0.23 5.26 4.70 -5.19 -0.02 5.23 16 5 C -0.52 -12.74 6.83 -34.44 -0.24 -12.97 16 6 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 7 C 0.07 1.80 4.63 -17.82 -0.08 1.72 16 8 N -0.89 -22.75 13.29 55.43 0.74 -22.01 16 9 Si 0.88 19.92 28.74 -169.99 -4.89 15.04 16 10 H -0.27 -5.82 6.16 56.52 0.35 -5.47 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.53 11.48 6.84 -10.99 -0.08 11.40 16 14 O -0.55 -13.30 16.12 -13.42 -0.22 -13.52 16 15 C 0.12 2.41 1.79 -29.03 -0.05 2.36 16 16 H 0.09 1.66 5.74 -51.93 -0.30 1.36 16 17 O -0.35 -6.45 8.79 -54.20 -0.48 -6.93 16 18 C 0.08 1.11 3.12 -26.73 -0.08 1.03 16 19 C -0.14 -1.74 9.56 37.16 0.36 -1.39 16 20 C -0.17 -2.24 9.52 37.16 0.35 -1.89 16 21 C -0.11 -2.20 4.57 -104.62 -0.48 -2.68 16 22 C -0.09 -1.61 9.31 -39.58 -0.37 -1.98 16 23 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 24 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 25 C -0.13 -2.44 9.24 -39.58 -0.37 -2.80 16 26 C -0.04 -0.82 6.38 -39.58 -0.25 -1.07 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.07 1.42 7.23 -51.93 -0.38 1.04 16 31 H 0.08 1.46 8.11 -51.93 -0.42 1.03 16 32 H 0.04 0.82 4.19 -51.93 -0.22 0.60 16 33 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.06 0.89 7.79 -51.93 -0.40 0.48 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.12 2.26 7.94 -52.49 -0.42 1.85 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 45 H 0.12 2.15 7.12 -52.48 -0.37 1.77 16 46 H 0.13 2.85 6.09 -52.49 -0.32 2.53 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -27.92 370.42 -8.92 -36.85 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.48 Total: 6.43 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.75 Total: -8.42 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.31 Total: -35.02 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.69 Total: -20.45 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.89 Total: 15.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.92 -8.92 -36.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292515615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.220 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds