Wall clock time and date at job start Tue Mar 31 2020 08:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47445 * 2 1 4 4 C 1.46495 * 119.99804 * 85.43775 * 3 2 1 5 5 C 1.50704 * 109.47383 * 83.78718 * 4 3 2 6 6 H 1.08002 * 119.99407 * 359.14539 * 5 4 3 7 7 C 1.37870 * 120.00437 * 179.14125 * 5 4 3 8 8 N 1.31519 * 119.99816 * 4.57116 * 7 5 4 9 9 Si 1.86793 * 120.00328 * 184.56551 * 7 5 4 10 10 H 1.48504 * 109.46953 * 94.31265 * 9 7 5 11 11 H 1.48504 * 109.47622 * 214.31137 * 9 7 5 12 12 H 1.48499 * 109.47358 * 334.31725 * 9 7 5 13 13 C 1.34775 * 119.99963 * 265.43918 * 3 2 1 14 14 O 1.21284 * 120.00137 * 354.88121 * 13 3 2 15 15 C 1.50700 * 120.00088 * 174.88037 * 13 3 2 16 16 H 1.08999 * 109.46787 * 321.01420 * 15 13 3 17 17 O 1.42894 * 109.47197 * 201.01462 * 15 13 3 18 18 C 1.42908 * 114.00046 * 149.99827 * 17 15 13 19 19 C 1.52996 * 109.47156 * 149.99954 * 18 17 15 20 20 C 1.52998 * 109.47183 * 269.99912 * 18 17 15 21 21 C 1.50701 * 109.47062 * 81.01223 * 15 13 3 22 22 C 1.38231 * 119.99897 * 74.38316 * 21 15 13 23 23 C 1.38238 * 119.99925 * 179.78635 * 22 21 15 24 24 C 1.38235 * 119.99966 * 0.44264 * 23 22 21 25 25 C 1.38235 * 119.99736 * 359.80709 * 24 23 22 26 26 C 1.38236 * 119.99660 * 254.65300 * 21 15 13 27 27 H 1.09004 * 109.46776 * 64.95665 * 1 2 3 28 28 H 1.09000 * 109.47478 * 184.95801 * 1 2 3 29 29 H 1.09001 * 109.47042 * 304.96105 * 1 2 3 30 30 H 1.09003 * 109.47302 * 239.99830 * 2 1 3 31 31 H 1.09003 * 109.47343 * 119.99943 * 2 1 3 32 32 H 1.08997 * 109.47374 * 203.78540 * 4 3 2 33 33 H 1.09001 * 109.47637 * 323.78799 * 4 3 2 34 34 H 0.96999 * 120.00290 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46522 * 30.00056 * 18 17 15 36 36 H 1.09008 * 109.47271 * 59.99913 * 19 18 17 37 37 H 1.08993 * 109.47376 * 179.97438 * 19 18 17 38 38 H 1.09007 * 109.46946 * 300.00507 * 19 18 17 39 39 H 1.08997 * 109.47353 * 300.00289 * 20 18 17 40 40 H 1.09004 * 109.46744 * 59.99919 * 20 18 17 41 41 H 1.08998 * 109.46964 * 179.97438 * 20 18 17 42 42 H 1.07996 * 120.00136 * 359.97438 * 22 21 15 43 43 H 1.08003 * 119.99812 * 180.27058 * 23 22 21 44 44 H 1.07993 * 119.99866 * 179.83775 * 24 23 22 45 45 H 1.08004 * 119.99898 * 180.02562 * 25 24 23 46 46 H 1.07993 * 120.00836 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1674 2.1054 1.2647 5 6 3.4958 1.7608 1.8874 6 1 4.1564 1.0607 1.3975 7 6 3.8679 2.3393 3.0823 8 7 3.0277 3.1217 3.7239 9 14 5.5653 2.0118 3.7901 10 1 6.4939 3.0915 3.3690 11 1 5.4854 1.9779 5.2726 12 1 6.0661 0.7058 3.2913 13 6 2.3306 1.9856 -1.1635 14 8 2.2963 1.3584 -2.2010 15 6 2.7222 3.4408 -1.1754 16 1 2.1032 3.9894 -0.4656 17 8 2.5306 3.9749 -2.4868 18 6 2.2063 5.3666 -2.5059 19 6 2.7351 5.9958 -3.7964 20 6 0.6873 5.5373 -2.4405 21 6 4.1718 3.5740 -0.7855 22 6 5.1637 3.2236 -1.6823 23 6 6.4934 3.3500 -1.3263 24 6 6.8312 3.8181 -0.0702 25 6 5.8392 4.1636 0.8284 26 6 4.5094 4.0413 0.4709 27 1 -0.3633 0.4350 -0.9311 28 1 -0.3634 -1.0238 0.0888 29 1 -0.3633 0.5889 0.8422 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1217 3.1781 1.0768 33 1 1.3634 1.8208 1.9434 34 1 3.2892 3.5284 4.5647 35 1 2.6646 5.8581 -1.6477 36 1 2.2769 5.5041 -4.6547 37 1 2.4874 7.0571 -3.8113 38 1 3.8174 5.8740 -3.8431 39 1 0.2291 5.0456 -3.2986 40 1 0.3107 5.0890 -1.5211 41 1 0.4401 6.5988 -2.4546 42 1 4.8998 2.8540 -2.6621 43 1 7.2684 3.0804 -2.0285 44 1 7.8700 3.9144 0.2088 45 1 6.1030 4.5298 1.8096 46 1 3.7345 4.3114 1.1729 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292515615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:39 Heat of formation + Delta-G solvation = -71.600274 kcal Electronic energy + Delta-G solvation = -27074.336282 eV Core-core repulsion = 23542.537881 eV Total energy + Delta-G solvation = -3531.798400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -41.50790 -39.68398 -38.86253 -36.96647 -34.75572 -34.24424 -32.54629 -31.64726 -31.56392 -29.09947 -28.22615 -27.57973 -24.99027 -24.13565 -23.48152 -22.64221 -21.85357 -20.16526 -18.53258 -18.37551 -17.95012 -17.78555 -16.91426 -16.55122 -16.38774 -15.78703 -15.51469 -15.39839 -15.15301 -14.74552 -14.48814 -14.31606 -14.28891 -13.71272 -13.64763 -13.50051 -13.37636 -13.16678 -13.10043 -13.07480 -12.90989 -12.71652 -12.58877 -12.55550 -12.13549 -12.01049 -11.86711 -11.81271 -11.69323 -11.55976 -10.95712 -10.54741 -10.46306 -9.65609 -9.56983 -9.46077 -8.16133 -6.23536 0.45224 0.66409 1.38561 1.43900 1.49758 1.66383 1.94700 2.43556 2.85894 3.06121 3.15828 3.74053 3.75349 3.88667 4.05196 4.13750 4.19947 4.22739 4.27676 4.28854 4.37990 4.39145 4.53535 4.71325 4.73406 4.76982 4.80510 4.87688 4.88792 4.94043 4.94700 5.03242 5.13238 5.16692 5.25434 5.26625 5.30688 5.33525 5.64072 5.67886 5.74705 5.76066 5.82067 6.08552 6.20735 6.21429 6.54227 6.82309 7.25757 7.44877 8.89548 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.007357 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.751847 B = 3805.215225 C = 5069.712690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.519 4.519 6 H 0.040 0.960 7 C 0.050 3.950 8 N -0.911 5.911 9 Si 0.918 3.082 10 H -0.250 1.250 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.519 3.481 14 O -0.580 6.580 15 C 0.133 3.867 16 H 0.086 0.914 17 O -0.368 6.368 18 C 0.066 3.934 19 C -0.139 4.139 20 C -0.171 4.171 21 C -0.121 4.121 22 C -0.099 4.099 23 C -0.137 4.137 24 C -0.113 4.113 25 C -0.139 4.139 26 C -0.052 4.052 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.117 0.883 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 5.660 -7.468 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.326 5.326 4 C 0.127 3.873 5 C -0.557 4.557 6 H 0.058 0.942 7 C -0.152 4.152 8 N -0.550 5.550 9 Si 0.744 3.256 10 H -0.175 1.175 11 H -0.215 1.215 12 H -0.210 1.210 13 C 0.307 3.693 14 O -0.461 6.461 15 C 0.072 3.928 16 H 0.103 0.897 17 O -0.287 6.287 18 C 0.008 3.992 19 C -0.196 4.196 20 C -0.228 4.228 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.155 4.155 24 C -0.131 4.131 25 C -0.157 4.157 26 C -0.070 4.070 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.135 0.865 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.612 5.333 -7.993 9.628 hybrid contribution 0.643 -0.316 1.164 1.367 sum 1.255 5.017 -6.829 8.566 Atomic orbital electron populations 1.22008 0.94395 1.03228 1.01299 1.21415 0.95323 0.82403 1.02324 1.48214 1.62670 1.14541 1.07133 1.19287 0.96450 0.91946 0.79598 1.21286 1.02497 1.25936 1.05984 0.94206 1.25165 0.99008 0.94718 0.96261 1.69976 1.35842 1.32488 1.16685 0.86201 0.82848 0.79173 0.77334 1.17488 1.21471 1.20980 1.20407 0.76365 0.89204 0.83340 1.90562 1.55383 1.66874 1.33281 1.20494 0.93928 0.92042 0.86361 0.89655 1.88010 1.90470 1.25375 1.24851 1.22479 0.95697 0.80828 1.00151 1.21808 1.01295 1.01113 0.95375 1.22296 0.95173 1.03451 1.01901 1.19778 0.93845 1.03059 0.95461 1.20961 0.93219 0.98511 0.98985 1.21250 0.95715 1.01173 0.97330 1.21385 0.99898 0.98246 0.93592 1.21181 0.93041 1.01963 0.99537 1.20945 0.96961 0.95283 0.93805 0.93694 0.89239 0.92715 0.91438 0.90458 0.94848 0.95898 0.92375 0.92139 0.92030 0.88661 0.92543 0.92088 0.93809 0.88945 0.86972 0.83807 0.83947 0.86528 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 10.24 71.98 0.74 -4.03 16 2 C 0.11 4.11 6.23 86.38 0.54 4.65 16 3 N -0.59 -25.79 2.46 -826.15 -2.03 -27.82 16 4 C 0.25 11.45 4.70 85.64 0.40 11.85 16 5 C -0.52 -25.72 6.83 25.60 0.17 -25.55 16 6 H 0.04 2.13 7.82 -2.91 -0.02 2.10 16 7 C 0.05 2.45 4.63 84.65 0.39 2.84 16 8 N -0.91 -46.50 13.29 21.45 0.29 -46.22 16 9 Si 0.92 40.00 28.74 68.60 1.97 41.97 16 10 H -0.25 -10.07 6.16 99.48 0.61 -9.46 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.52 23.19 6.84 87.66 0.60 23.79 16 14 O -0.58 -28.47 16.12 15.10 0.24 -28.23 16 15 C 0.13 5.29 1.79 29.10 0.05 5.34 16 16 H 0.09 3.35 5.74 -2.39 -0.01 3.34 16 17 O -0.37 -13.69 8.79 -130.84 -1.15 -14.84 16 18 C 0.07 1.86 3.12 30.59 0.10 1.96 16 19 C -0.14 -3.13 9.56 71.98 0.69 -2.44 16 20 C -0.17 -4.24 9.52 71.98 0.69 -3.55 16 21 C -0.12 -4.75 4.57 -19.87 -0.09 -4.84 16 22 C -0.10 -3.66 9.31 22.27 0.21 -3.45 16 23 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 24 C -0.11 -3.60 10.05 22.27 0.22 -3.38 16 25 C -0.14 -5.09 9.24 22.27 0.21 -4.89 16 26 C -0.05 -2.06 6.38 22.27 0.14 -1.92 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.07 2.64 7.23 -2.39 -0.02 2.63 16 31 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 32 H 0.03 1.58 4.19 -2.39 -0.01 1.57 16 33 H 0.02 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 35 H 0.06 1.72 7.79 -2.39 -0.02 1.70 16 36 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.19 7.96 -2.39 -0.02 1.17 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.11 4.28 7.94 -2.91 -0.02 4.25 16 43 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 45 H 0.12 4.17 7.12 -2.91 -0.02 4.15 16 46 H 0.11 4.97 6.09 -2.91 -0.02 4.95 16 Total: -1.00 -59.58 370.42 5.45 -54.14 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.85 Total: 28.75 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.28 Total: -7.76 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.75 Total: -74.04 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.91 Total: -43.06 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.97 Total: 41.97 kcal Total: -59.58 5.45 -54.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292515615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.464 kcal (2) G-P(sol) polarization free energy of solvation -59.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds