Wall clock time and date at job start Tue Mar 31 2020 09:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00685 * 2 1 4 4 N 1.46893 * 109.47190 * 124.73175 * 3 2 1 5 5 C 1.46904 * 111.00105 * 61.75171 * 4 3 2 6 6 C 1.50694 * 109.46876 * 66.04516 * 5 4 3 7 7 H 1.07999 * 120.00460 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00095 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00336 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99794 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46916 * 89.99908 * 10 8 6 12 12 H 1.48500 * 109.47105 * 210.00370 * 10 8 6 13 13 H 1.48506 * 109.47100 * 330.00133 * 10 8 6 14 14 C 1.46897 * 111.00008 * 297.79940 * 4 3 2 15 15 C 1.50707 * 109.46990 * 288.49126 * 14 4 3 16 16 C 1.38257 * 119.92522 * 273.45720 * 15 14 4 17 17 C 1.38240 * 120.14504 * 179.74439 * 16 15 14 18 18 C 1.38567 * 119.99849 * 0.51313 * 17 16 15 19 19 O 1.35997 * 120.07303 * 179.74456 * 18 17 16 20 20 C 1.42897 * 116.99861 * 359.72394 * 19 18 17 21 21 C 1.39150 * 119.85462 * 359.46793 * 18 17 16 22 22 O 1.35991 * 120.07574 * 180.25656 * 21 18 17 23 23 C 1.42897 * 117.00197 * 179.97438 * 22 21 18 24 24 C 1.53002 * 109.47430 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.92581 * 93.43733 * 15 14 4 26 26 H 1.07990 * 120.00478 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99431 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99951 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46215 * 4.73044 * 3 2 1 30 30 H 1.09001 * 109.47232 * 244.73844 * 3 2 1 31 31 H 1.08997 * 109.46821 * 186.04482 * 5 4 3 32 32 H 1.08997 * 109.46672 * 306.04413 * 5 4 3 33 33 H 0.96998 * 120.00197 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47146 * 168.49727 * 14 4 3 35 35 H 1.08998 * 109.47295 * 48.49083 * 14 4 3 36 36 H 1.08002 * 119.92476 * 0.02562 * 16 15 14 37 37 H 1.08004 * 120.00003 * 180.25889 * 17 16 15 38 38 H 1.09001 * 109.47172 * 300.00080 * 20 19 18 39 39 H 1.08995 * 109.47193 * 60.00210 * 20 19 18 40 40 H 1.09006 * 109.47027 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47440 * 299.99733 * 23 22 21 42 42 H 1.08998 * 109.47105 * 59.99879 * 23 22 21 43 43 H 1.08995 * 109.47720 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47120 * 300.00731 * 24 23 22 45 45 H 1.09008 * 109.46924 * 60.00127 * 24 23 22 46 46 H 1.07994 * 120.00372 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9918 1.3345 1.1382 5 6 3.9850 0.2569 1.0356 6 6 4.8723 0.5035 -0.1571 7 1 4.7147 1.3739 -0.7768 8 6 5.8856 -0.3820 -0.4574 9 7 6.6597 -0.1671 -1.4986 10 14 6.1589 -1.8871 0.6147 11 1 5.3516 -3.0193 0.0934 12 1 7.5976 -2.2544 0.5949 13 1 5.7445 -1.5841 2.0082 14 6 2.2647 1.2607 2.4124 15 6 1.5442 2.5618 2.6557 16 6 2.2005 3.6079 3.2773 17 6 1.5456 4.8052 3.4980 18 6 0.2252 4.9552 3.1055 19 8 -0.4222 6.1306 3.3265 20 6 0.3183 7.1672 3.9740 21 6 -0.4353 3.9024 2.4795 22 8 -1.7296 4.0465 2.0878 23 6 -2.3434 2.9242 1.4510 24 6 -3.7878 3.2722 1.0855 25 6 0.2286 2.7067 2.2565 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3583 2.1318 0.0848 30 1 2.6252 1.4004 -0.9294 31 1 4.5913 0.2343 1.9411 32 1 3.4736 -0.6983 0.9168 33 1 7.3728 -0.7899 -1.7097 34 1 2.9701 1.0789 3.2233 35 1 1.5409 0.4467 2.3712 36 1 3.2285 3.4910 3.5870 37 1 2.0619 5.6223 3.9800 38 1 0.6433 6.8227 4.9557 39 1 1.1900 7.4218 3.3713 40 1 -0.3140 8.0476 4.0892 41 1 -1.7900 2.6722 0.5463 42 1 -2.3362 2.0720 2.1305 43 1 -4.2559 2.4163 0.5993 44 1 -4.3410 3.5240 1.9903 45 1 -3.7954 4.1245 0.4060 46 1 -0.2818 1.8880 1.7713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292772078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:02 Heat of formation + Delta-G solvation = -19.553300 kcal Electronic energy + Delta-G solvation = -25549.025046 eV Core-core repulsion = 22019.483571 eV Total energy + Delta-G solvation = -3529.541474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53757 -38.51749 -38.11499 -36.36246 -32.98018 -32.42439 -31.92626 -30.69014 -29.62954 -27.98370 -27.24385 -25.91587 -24.03773 -23.50866 -21.61281 -21.24447 -20.76221 -19.09282 -18.17370 -17.12055 -16.78337 -16.50339 -16.26357 -15.50908 -15.25693 -14.88016 -14.68012 -14.41443 -14.16986 -13.95557 -13.86764 -13.26634 -13.21928 -12.89284 -12.68349 -12.45013 -12.19275 -12.06512 -11.85266 -11.67011 -11.46598 -11.17464 -11.10130 -10.93280 -10.89686 -10.89101 -10.67679 -10.59731 -10.16603 -9.84994 -9.41499 -8.96576 -8.60746 -8.56359 -7.65256 -7.39549 -6.06851 -4.04085 1.40682 1.58803 2.59394 3.19693 3.25263 3.29079 3.33927 3.34928 3.82443 4.39512 4.76586 4.80731 4.87431 4.94199 4.99214 5.08727 5.09735 5.14530 5.17507 5.26391 5.33743 5.36728 5.40841 5.48415 5.55622 5.60554 5.66388 5.68414 5.84940 5.93574 5.96123 6.07700 6.27235 6.28453 6.41253 6.55040 6.76611 6.80658 6.86764 6.90361 6.98708 7.09595 7.09972 7.58034 7.65087 7.85798 8.00102 8.63191 9.02129 9.54592 11.06284 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.003895 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.445100 B = 7187.018445 C = 8322.296827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C 0.082 3.918 4 N -0.511 5.511 5 C 0.158 3.842 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.086 3.914 15 C -0.056 4.056 16 C -0.095 4.095 17 C -0.172 4.172 18 C 0.087 3.913 19 O -0.311 6.311 20 C 0.028 3.972 21 C 0.097 3.903 22 O -0.308 6.308 23 C 0.053 3.947 24 C -0.150 4.150 25 C -0.169 4.169 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 8.010 10.068 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.176 4.176 3 C -0.045 4.045 4 N -0.233 5.233 5 C 0.033 3.967 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.042 4.042 15 C -0.057 4.057 16 C -0.113 4.113 17 C -0.191 4.191 18 C 0.042 3.958 19 O -0.225 6.225 20 C -0.067 4.067 21 C 0.052 3.948 22 O -0.223 6.223 23 C -0.023 4.023 24 C -0.207 4.207 25 C -0.188 4.188 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.870 8.604 9.931 21.383 hybrid contribution 0.207 -1.871 0.471 1.940 sum -16.663 6.733 10.402 20.765 Atomic orbital electron populations 1.23697 0.95985 1.00721 1.05146 1.23926 0.96242 1.01540 0.95927 1.21368 0.94089 0.92438 0.96633 1.62249 1.13480 1.48433 0.99167 1.20262 0.90344 0.87693 0.98443 1.21006 1.13228 1.10277 1.10033 0.90115 1.24880 0.95692 0.97668 0.94981 1.69886 1.19600 1.37296 1.27080 0.86904 0.77602 0.83787 0.81687 1.20412 1.21161 1.19169 1.21066 0.96394 0.92294 0.94415 1.19608 0.92602 0.96544 0.96975 1.20774 0.99788 0.91774 0.99009 1.21023 0.92948 0.99688 1.05423 1.18188 0.91260 0.85615 1.00705 1.86135 1.39975 1.20664 1.75692 1.23009 0.97496 0.89630 0.96611 1.18120 0.84429 0.92771 0.99471 1.86124 1.22698 1.39380 1.74078 1.22781 0.94366 0.88324 0.96810 1.21749 0.93738 1.02760 1.02431 1.21096 0.96078 0.96458 1.05143 0.89227 0.89369 0.87090 0.91793 0.88475 0.95376 0.99312 0.92668 0.90439 0.94339 0.85315 0.85054 0.92939 0.92747 0.88602 0.92073 0.92260 0.90493 0.91682 0.91558 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.02 13.54 29.01 0.39 -2.63 16 2 C -0.16 -2.65 7.50 -36.02 -0.27 -2.92 16 3 C 0.08 1.55 5.39 -4.98 -0.03 1.53 16 4 N -0.51 -10.31 4.65 -238.97 -1.11 -11.42 16 5 C 0.16 3.69 3.61 -4.98 -0.02 3.67 16 6 C -0.51 -14.00 9.04 -34.44 -0.31 -14.31 16 7 H 0.08 2.44 7.36 -52.49 -0.39 2.06 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 10 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.09 1.46 4.98 -4.97 -0.02 1.43 16 15 C -0.06 -0.88 4.95 -104.61 -0.52 -1.39 16 16 C -0.09 -1.38 9.70 -39.57 -0.38 -1.77 16 17 C -0.17 -2.30 9.04 -39.46 -0.36 -2.66 16 18 C 0.09 1.28 6.70 -39.12 -0.26 1.02 16 19 O -0.31 -4.27 10.28 -34.23 -0.35 -4.62 16 20 C 0.03 0.25 9.81 101.05 0.99 1.24 16 21 C 0.10 1.46 6.70 -39.12 -0.26 1.20 16 22 O -0.31 -4.42 9.92 -34.22 -0.34 -4.76 16 23 C 0.05 0.57 5.46 37.16 0.20 0.77 16 24 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 25 C -0.17 -2.48 7.27 -39.46 -0.29 -2.76 16 26 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.09 1.11 6.06 -52.48 -0.32 0.79 16 28 H 0.11 2.05 6.70 -52.48 -0.35 1.70 16 29 H 0.06 1.12 6.04 -51.93 -0.31 0.80 16 30 H 0.10 2.08 6.81 -51.93 -0.35 1.72 16 31 H 0.03 0.67 6.92 -51.93 -0.36 0.31 16 32 H -0.01 -0.25 5.64 -51.93 -0.29 -0.54 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.08 1.27 7.78 -51.93 -0.40 0.86 16 35 H 0.04 0.63 6.73 -51.93 -0.35 0.28 16 36 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 38 H 0.05 0.41 7.68 -51.93 -0.40 0.01 16 39 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.65 6.94 -51.93 -0.36 0.29 16 42 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.13 1.81 4.33 -52.49 -0.23 1.58 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -31.49 364.10 -8.01 -39.49 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.95 Total: 2.43 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.85 Total: -16.59 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.34 Total: -37.83 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.69 Total: -9.38 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.49 -8.01 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292772078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.939 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds