Wall clock time and date at job start Tue Mar 31 2020 09:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00685 * 2 1 4 4 N 1.46893 * 109.47190 * 124.73175 * 3 2 1 5 5 C 1.46904 * 111.00105 * 61.75171 * 4 3 2 6 6 C 1.50694 * 109.46876 * 66.04516 * 5 4 3 7 7 H 1.07999 * 120.00460 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00095 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00336 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99794 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46916 * 89.99908 * 10 8 6 12 12 H 1.48500 * 109.47105 * 210.00370 * 10 8 6 13 13 H 1.48506 * 109.47100 * 330.00133 * 10 8 6 14 14 C 1.46897 * 111.00008 * 297.79940 * 4 3 2 15 15 C 1.50707 * 109.46990 * 288.49126 * 14 4 3 16 16 C 1.38257 * 119.92522 * 273.45720 * 15 14 4 17 17 C 1.38240 * 120.14504 * 179.74439 * 16 15 14 18 18 C 1.38567 * 119.99849 * 0.51313 * 17 16 15 19 19 O 1.35997 * 120.07303 * 179.74456 * 18 17 16 20 20 C 1.42897 * 116.99861 * 359.72394 * 19 18 17 21 21 C 1.39150 * 119.85462 * 359.46793 * 18 17 16 22 22 O 1.35991 * 120.07574 * 180.25656 * 21 18 17 23 23 C 1.42897 * 117.00197 * 179.97438 * 22 21 18 24 24 C 1.53002 * 109.47430 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.92581 * 93.43733 * 15 14 4 26 26 H 1.07990 * 120.00478 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99431 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99951 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46215 * 4.73044 * 3 2 1 30 30 H 1.09001 * 109.47232 * 244.73844 * 3 2 1 31 31 H 1.08997 * 109.46821 * 186.04482 * 5 4 3 32 32 H 1.08997 * 109.46672 * 306.04413 * 5 4 3 33 33 H 0.96998 * 120.00197 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47146 * 168.49727 * 14 4 3 35 35 H 1.08998 * 109.47295 * 48.49083 * 14 4 3 36 36 H 1.08002 * 119.92476 * 0.02562 * 16 15 14 37 37 H 1.08004 * 120.00003 * 180.25889 * 17 16 15 38 38 H 1.09001 * 109.47172 * 300.00080 * 20 19 18 39 39 H 1.08995 * 109.47193 * 60.00210 * 20 19 18 40 40 H 1.09006 * 109.47027 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47440 * 299.99733 * 23 22 21 42 42 H 1.08998 * 109.47105 * 59.99879 * 23 22 21 43 43 H 1.08995 * 109.47720 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47120 * 300.00731 * 24 23 22 45 45 H 1.09008 * 109.46924 * 60.00127 * 24 23 22 46 46 H 1.07994 * 120.00372 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9918 1.3345 1.1382 5 6 3.9850 0.2569 1.0356 6 6 4.8723 0.5035 -0.1571 7 1 4.7147 1.3739 -0.7768 8 6 5.8856 -0.3820 -0.4574 9 7 6.6597 -0.1671 -1.4986 10 14 6.1589 -1.8871 0.6147 11 1 5.3516 -3.0193 0.0934 12 1 7.5976 -2.2544 0.5949 13 1 5.7445 -1.5841 2.0082 14 6 2.2647 1.2607 2.4124 15 6 1.5442 2.5618 2.6557 16 6 2.2005 3.6079 3.2773 17 6 1.5456 4.8052 3.4980 18 6 0.2252 4.9552 3.1055 19 8 -0.4222 6.1306 3.3265 20 6 0.3183 7.1672 3.9740 21 6 -0.4353 3.9024 2.4795 22 8 -1.7296 4.0465 2.0878 23 6 -2.3434 2.9242 1.4510 24 6 -3.7878 3.2722 1.0855 25 6 0.2286 2.7067 2.2565 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3583 2.1318 0.0848 30 1 2.6252 1.4004 -0.9294 31 1 4.5913 0.2343 1.9411 32 1 3.4736 -0.6983 0.9168 33 1 7.3728 -0.7899 -1.7097 34 1 2.9701 1.0789 3.2233 35 1 1.5409 0.4467 2.3712 36 1 3.2285 3.4910 3.5870 37 1 2.0619 5.6223 3.9800 38 1 0.6433 6.8227 4.9557 39 1 1.1900 7.4218 3.3713 40 1 -0.3140 8.0476 4.0892 41 1 -1.7900 2.6722 0.5463 42 1 -2.3362 2.0720 2.1305 43 1 -4.2559 2.4163 0.5993 44 1 -4.3410 3.5240 1.9903 45 1 -3.7954 4.1245 0.4060 46 1 -0.2818 1.8880 1.7713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292772078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:01 Heat of formation + Delta-G solvation = -39.314745 kcal Electronic energy + Delta-G solvation = -25549.881966 eV Core-core repulsion = 22019.483571 eV Total energy + Delta-G solvation = -3530.398395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58804 -39.55701 -39.39586 -37.56658 -34.85348 -33.88499 -32.86638 -31.96596 -30.68303 -29.50099 -28.42594 -27.15604 -25.25180 -24.76187 -22.92179 -22.48411 -21.95449 -20.48841 -19.24463 -18.89217 -18.06410 -17.57673 -17.21252 -16.68513 -16.60774 -16.35435 -15.98940 -15.75164 -15.48256 -15.09441 -15.08542 -14.52626 -14.44911 -14.11762 -13.98155 -13.45905 -13.38194 -13.18931 -13.08867 -12.87260 -12.79668 -12.52726 -12.48284 -12.30087 -12.07178 -11.96257 -11.88069 -11.75277 -11.71375 -11.57671 -11.43090 -10.77112 -10.29184 -9.65975 -8.98244 -8.70921 -8.25441 -6.27961 0.31588 0.46618 1.34246 1.35827 1.37639 1.47776 2.27111 2.35886 2.39634 2.68917 3.08294 3.47005 3.80812 3.87288 4.00360 4.07890 4.09302 4.12758 4.21502 4.23947 4.37587 4.43955 4.44434 4.47866 4.55680 4.56893 4.68352 4.75759 4.78198 4.84759 4.92012 4.96786 4.99143 5.07884 5.13381 5.21342 5.26767 5.33023 5.54363 5.68808 5.70905 5.73775 5.79746 6.01806 6.15429 6.38538 6.64819 6.68182 6.78154 7.35088 8.91373 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.003895 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.445100 B = 7187.018445 C = 8322.296827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.191 4.191 3 C 0.092 3.908 4 N -0.528 5.528 5 C 0.170 3.830 6 C -0.510 4.510 7 H 0.035 0.965 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.944 3.056 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.246 1.246 14 C 0.092 3.908 15 C -0.072 4.072 16 C -0.104 4.104 17 C -0.168 4.168 18 C 0.079 3.921 19 O -0.330 6.330 20 C 0.018 3.982 21 C 0.084 3.916 22 O -0.324 6.324 23 C 0.043 3.957 24 C -0.146 4.146 25 C -0.167 4.167 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.030 0.970 32 H -0.004 1.004 33 H 0.265 0.735 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.019 7.510 11.988 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.210 4.210 3 C -0.036 4.036 4 N -0.250 5.250 5 C 0.043 3.957 6 C -0.548 4.548 7 H 0.053 0.947 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.768 3.232 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.170 1.170 14 C -0.035 4.035 15 C -0.073 4.073 16 C -0.123 4.123 17 C -0.186 4.186 18 C 0.033 3.967 19 O -0.244 6.244 20 C -0.076 4.076 21 C 0.038 3.962 22 O -0.239 6.239 23 C -0.032 4.032 24 C -0.203 4.203 25 C -0.186 4.186 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.014 0.986 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.151 0.849 37 H 0.175 0.825 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.928 8.122 11.865 23.770 hybrid contribution 0.700 -1.538 -0.168 1.698 sum -18.228 6.584 11.697 22.637 Atomic orbital electron populations 1.23968 0.94712 1.02661 0.99979 1.23580 0.97242 0.99541 1.00675 1.21148 0.93674 0.94292 0.94448 1.62110 1.14421 1.47306 1.01171 1.19985 0.90572 0.88998 0.96098 1.21227 1.14034 1.08632 1.10899 0.94662 1.25802 0.95335 1.01273 0.96410 1.70052 1.20675 1.38996 1.29374 0.85764 0.77563 0.79375 0.80542 1.19391 1.20960 1.16999 1.21031 0.96432 0.93532 0.92500 1.19550 0.93098 0.96284 0.98377 1.20933 1.00118 0.92137 0.99107 1.21253 0.92623 0.99922 1.04835 1.18451 0.91687 0.86091 1.00445 1.86112 1.41189 1.21007 1.76124 1.23328 0.98095 0.89183 0.97022 1.18338 0.84953 0.93094 0.99769 1.86119 1.22384 1.41047 1.74325 1.23069 0.95364 0.87936 0.96821 1.21780 0.92326 1.03632 1.02538 1.21118 0.95739 0.96751 1.05032 0.86734 0.87694 0.88861 0.90562 0.92611 0.95245 0.98626 0.92561 0.90096 0.93453 0.84903 0.82482 0.91546 0.92098 0.86418 0.91963 0.91311 0.88119 0.91625 0.92014 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.37 13.54 67.78 0.92 -3.45 16 2 C -0.19 -6.31 7.50 25.65 0.19 -6.11 16 3 C 0.09 3.53 5.39 85.56 0.46 3.99 16 4 N -0.53 -21.48 4.65 -909.96 -4.23 -25.71 16 5 C 0.17 7.96 3.61 85.55 0.31 8.27 16 6 C -0.51 -29.21 9.04 25.60 0.23 -28.98 16 7 H 0.04 2.28 7.36 -2.91 -0.02 2.26 16 8 C 0.01 0.51 5.47 84.66 0.46 0.97 16 9 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 10 Si 0.94 43.55 27.47 68.60 1.88 45.44 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 14 C 0.09 3.02 4.98 85.56 0.43 3.45 16 15 C -0.07 -2.17 4.95 -19.86 -0.10 -2.27 16 16 C -0.10 -2.93 9.70 22.27 0.22 -2.72 16 17 C -0.17 -4.23 9.04 22.35 0.20 -4.02 16 18 C 0.08 2.20 6.70 22.57 0.15 2.35 16 19 O -0.33 -8.57 10.28 -79.65 -0.82 -9.39 16 20 C 0.02 0.28 9.81 113.37 1.11 1.40 16 21 C 0.08 2.42 6.70 22.57 0.15 2.58 16 22 O -0.32 -8.88 9.92 -79.59 -0.79 -9.67 16 23 C 0.04 0.84 5.46 71.98 0.39 1.23 16 24 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 25 C -0.17 -4.68 7.27 22.35 0.16 -4.52 16 26 H 0.11 2.35 8.06 -2.92 -0.02 2.32 16 27 H 0.10 2.28 6.06 -2.91 -0.02 2.26 16 28 H 0.09 3.42 6.70 -2.91 -0.02 3.40 16 29 H 0.08 2.67 6.04 -2.39 -0.01 2.66 16 30 H 0.06 2.55 6.81 -2.39 -0.02 2.54 16 31 H 0.03 1.37 6.92 -2.39 -0.02 1.35 16 32 H 0.00 -0.18 5.64 -2.39 -0.01 -0.19 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.08 2.55 7.78 -2.39 -0.02 2.53 16 35 H 0.05 1.46 6.73 -2.39 -0.02 1.45 16 36 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.16 2.99 6.30 -2.91 -0.02 2.97 16 38 H 0.07 0.86 7.68 -2.39 -0.02 0.85 16 39 H 0.06 0.88 7.65 -2.39 -0.02 0.86 16 40 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.06 1.19 6.94 -2.39 -0.02 1.17 16 42 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.14 3.56 4.33 -2.91 -0.01 3.55 16 Total: -1.00 -70.71 364.10 3.29 -67.42 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.91 Total: 20.29 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 6.03 Total: -29.23 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.93 Total: -84.86 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.61 Total: -19.06 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -70.71 3.29 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292772078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.109 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds