Wall clock time and date at job start Tue Mar 31 2020 08:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47202 * 2 1 4 4 C 1.46494 * 120.00272 * 264.88586 * 3 2 1 5 5 C 1.50693 * 109.47495 * 275.42119 * 4 3 2 6 6 H 1.08002 * 120.00004 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00551 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47005 * 60.00151 * 9 7 5 11 11 H 1.48504 * 109.46503 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46924 * 299.99559 * 9 7 5 13 13 C 1.34784 * 119.99830 * 84.88607 * 3 2 1 14 14 O 1.21277 * 120.00370 * 5.33349 * 13 3 2 15 15 C 1.50698 * 119.99716 * 185.33207 * 13 3 2 16 16 H 1.08998 * 109.47614 * 42.70059 * 15 13 3 17 17 C 1.52999 * 109.47278 * 282.70178 * 15 13 3 18 18 O 1.42905 * 109.47136 * 162.70091 * 15 13 3 19 19 C 1.42900 * 113.99943 * 210.00035 * 18 15 13 20 20 C 1.53000 * 109.46723 * 179.97438 * 19 18 15 21 21 C 1.50704 * 109.46853 * 180.02562 * 20 19 18 22 22 C 1.38239 * 119.99725 * 269.72290 * 21 20 19 23 23 C 1.38230 * 120.00004 * 179.76218 * 22 21 20 24 24 C 1.38234 * 119.99812 * 0.51858 * 23 22 21 25 25 C 1.38239 * 120.00170 * 359.73869 * 24 23 22 26 26 C 1.38226 * 120.00351 * 90.00121 * 21 20 19 27 27 H 1.09000 * 109.47153 * 64.69488 * 1 2 3 28 28 H 1.08999 * 109.47097 * 184.69743 * 1 2 3 29 29 H 1.09004 * 109.46958 * 304.69514 * 1 2 3 30 30 H 1.08999 * 109.47090 * 239.99861 * 2 1 3 31 31 H 1.09008 * 109.46782 * 120.00107 * 2 1 3 32 32 H 1.09002 * 109.46864 * 35.41918 * 4 3 2 33 33 H 1.09000 * 109.47504 * 155.41683 * 4 3 2 34 34 H 0.97002 * 119.99157 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47201 * 292.61577 * 17 15 13 36 36 H 1.09001 * 109.47524 * 52.61549 * 17 15 13 37 37 H 1.09005 * 109.47118 * 172.61599 * 17 15 13 38 38 H 1.08994 * 109.47106 * 299.99678 * 19 18 15 39 39 H 1.08997 * 109.47241 * 59.99889 * 19 18 15 40 40 H 1.08994 * 109.47146 * 299.99750 * 20 19 18 41 41 H 1.08997 * 109.47274 * 60.00006 * 20 19 18 42 42 H 1.08001 * 119.99901 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.00330 * 180.23158 * 23 22 21 44 44 H 1.08003 * 120.00316 * 179.72155 * 24 23 22 45 45 H 1.07996 * 119.99823 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.99873 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3691 2.0341 -1.2636 5 6 3.7845 1.6768 -1.6377 6 1 4.3649 1.0285 -0.9980 7 6 4.3386 2.1775 -2.7968 8 7 3.6317 2.9665 -3.5761 9 14 6.0934 1.7351 -3.2600 10 1 6.2083 0.2627 -3.4144 11 1 6.4489 2.3970 -4.5410 12 1 7.0179 2.1948 -2.1927 13 6 2.1449 2.0512 1.1626 14 8 1.9477 1.4819 2.2152 15 6 2.5315 3.5077 1.1546 16 1 1.9817 4.0253 0.3686 17 6 4.0338 3.6352 0.8948 18 8 2.2157 4.0913 2.4202 19 6 1.8891 5.4809 2.3542 20 6 1.5698 5.9970 3.7587 21 6 1.2247 7.4623 3.6890 22 6 2.2189 8.4136 3.8224 23 6 1.9031 9.7576 3.7536 24 6 0.5917 10.1505 3.5621 25 6 -0.4032 9.1994 3.4341 26 6 -0.0866 7.8553 3.4975 27 1 -0.3633 0.4393 -0.9291 28 1 -0.3633 -1.0242 0.0842 29 1 -0.3633 0.5850 0.8450 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6903 1.6975 -2.0472 33 1 2.2852 3.1148 -1.1497 34 1 4.0214 3.3185 -4.3916 35 1 4.5850 3.2334 1.7450 36 1 4.2958 3.0774 -0.0043 37 1 4.2911 4.6857 0.7586 38 1 2.7354 6.0341 1.9472 39 1 1.0207 5.6199 1.7103 40 1 0.7233 5.4437 4.1654 41 1 2.4380 5.8580 4.4029 42 1 3.2429 8.1066 3.9761 43 1 2.6803 10.5008 3.8540 44 1 0.3443 11.2007 3.5128 45 1 -1.4278 9.5064 3.2849 46 1 -0.8639 7.1121 3.3974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294429807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:51 Heat of formation + Delta-G solvation = -70.295662 kcal Electronic energy + Delta-G solvation = -24953.464124 eV Core-core repulsion = 21421.722296 eV Total energy + Delta-G solvation = -3531.741828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.58559 -39.29329 -37.32428 -35.15487 -33.64923 -32.85709 -31.42216 -31.03102 -29.66594 -28.25349 -27.13321 -24.30671 -23.41843 -23.03851 -22.71195 -21.73594 -20.99927 -18.42392 -16.98794 -16.74871 -16.53793 -16.12057 -15.75830 -15.36225 -15.04036 -14.73769 -14.57316 -14.16617 -13.87526 -13.53849 -13.28553 -13.07114 -12.97760 -12.68096 -12.47812 -12.26857 -12.08148 -11.67706 -11.65688 -11.58193 -11.34206 -11.22492 -11.15621 -10.99357 -10.89517 -10.77988 -10.60738 -10.46408 -10.10959 -9.81587 -9.39815 -9.06284 -8.86350 -8.78281 -8.56260 -7.72992 -6.25157 -4.31995 1.19044 1.25724 3.20678 3.26058 3.27913 3.36461 3.46549 3.69120 4.24661 4.37112 4.70713 4.80334 4.90350 5.01015 5.06862 5.10802 5.23375 5.37745 5.39148 5.42932 5.53365 5.56313 5.67395 5.73525 5.81869 5.82867 5.87118 5.90354 5.98691 6.06209 6.28367 6.31534 6.32561 6.36205 6.39993 6.46229 6.53136 6.65207 6.74857 6.86400 7.03336 7.12946 7.41338 7.60201 7.70121 7.98449 8.32571 8.73304 9.02756 9.34760 10.80897 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.003359 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.063347 B = 8332.905087 C = 9503.433629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.595 5.595 4 C 0.233 3.767 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.520 3.480 14 O -0.556 6.556 15 C 0.081 3.919 16 H 0.082 0.918 17 C -0.184 4.184 18 O -0.366 6.366 19 C 0.067 3.933 20 C -0.079 4.079 21 C -0.077 4.077 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 10.145 9.747 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.328 5.328 4 C 0.113 3.887 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.307 3.693 14 O -0.435 6.435 15 C 0.020 3.980 16 H 0.100 0.900 17 C -0.241 4.241 18 O -0.285 6.285 19 C -0.010 4.010 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.618 9.846 10.268 15.295 hybrid contribution 0.975 0.114 -0.814 1.275 sum -4.643 9.960 9.455 14.497 Atomic orbital electron populations 1.22119 0.96948 1.01281 1.01831 1.21212 0.93228 0.83585 1.02547 1.48183 1.63195 1.13425 1.07975 1.19516 0.96064 0.93458 0.79627 1.21416 0.98171 1.30884 1.07207 0.91830 1.24953 0.98191 0.94666 0.95862 1.69914 1.37068 1.32068 1.13490 0.86588 0.84331 0.78904 0.77921 1.20038 1.21105 1.19911 1.20172 0.77071 0.88355 0.83744 1.90591 1.51841 1.69789 1.31273 1.21884 0.97842 0.92324 0.85938 0.90033 1.22515 0.93246 1.02944 1.05431 1.87948 1.89299 1.22164 1.29058 1.22447 0.99170 0.82862 0.96492 1.20473 1.03316 0.90792 0.97046 1.19804 0.93541 0.95077 0.99304 1.21129 0.99194 0.92809 1.00122 1.21150 0.96554 0.95932 1.00154 1.21150 0.93222 0.99414 1.00660 1.21150 0.99351 0.93078 1.00204 1.21129 0.96066 0.96154 0.99931 0.92684 0.92377 0.92831 0.90129 0.91310 0.94654 0.94300 0.92348 0.92473 0.86336 0.92714 0.93127 0.93387 0.90035 0.90016 0.85875 0.86102 0.86259 0.86101 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.20 37.16 0.38 -2.27 16 2 C 0.12 2.21 6.14 -4.05 -0.02 2.19 16 3 N -0.60 -12.71 2.47 -175.07 -0.43 -13.15 16 4 C 0.23 5.39 4.67 -5.20 -0.02 5.36 16 5 C -0.54 -13.41 6.91 -34.44 -0.24 -13.64 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -23.55 13.29 55.43 0.74 -22.82 16 9 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.52 11.45 6.93 -10.98 -0.08 11.37 16 14 O -0.56 -13.54 16.22 -13.73 -0.22 -13.76 16 15 C 0.08 1.59 2.30 -27.88 -0.06 1.52 16 16 H 0.08 1.55 6.31 -51.93 -0.33 1.23 16 17 C -0.18 -3.56 9.30 37.16 0.35 -3.21 16 18 O -0.37 -6.87 9.58 -54.52 -0.52 -7.39 16 19 C 0.07 0.99 5.73 37.16 0.21 1.20 16 20 C -0.08 -0.98 5.72 -27.88 -0.16 -1.14 16 21 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 22 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 23 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 24 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.11 -1.23 9.70 -39.59 -0.38 -1.61 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 31 H 0.07 1.32 7.51 -51.92 -0.39 0.93 16 32 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.04 0.92 5.67 -51.93 -0.29 0.62 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.12 2.58 4.67 -51.93 -0.24 2.34 16 37 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 38 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 41 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -29.22 380.09 -9.52 -38.74 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.54 Total: 4.06 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.24 Total: -6.30 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.30 Total: -35.96 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.75 Total: -21.15 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.22 -9.52 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294429807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.557 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds