Wall clock time and date at job start Tue Mar 31 2020 08:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47202 * 2 1 4 4 C 1.46494 * 120.00272 * 264.88586 * 3 2 1 5 5 C 1.50693 * 109.47495 * 275.42119 * 4 3 2 6 6 H 1.08002 * 120.00004 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00551 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47005 * 60.00151 * 9 7 5 11 11 H 1.48504 * 109.46503 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46924 * 299.99559 * 9 7 5 13 13 C 1.34784 * 119.99830 * 84.88607 * 3 2 1 14 14 O 1.21277 * 120.00370 * 5.33349 * 13 3 2 15 15 C 1.50698 * 119.99716 * 185.33207 * 13 3 2 16 16 H 1.08998 * 109.47614 * 42.70059 * 15 13 3 17 17 C 1.52999 * 109.47278 * 282.70178 * 15 13 3 18 18 O 1.42905 * 109.47136 * 162.70091 * 15 13 3 19 19 C 1.42900 * 113.99943 * 210.00035 * 18 15 13 20 20 C 1.53000 * 109.46723 * 179.97438 * 19 18 15 21 21 C 1.50704 * 109.46853 * 180.02562 * 20 19 18 22 22 C 1.38239 * 119.99725 * 269.72290 * 21 20 19 23 23 C 1.38230 * 120.00004 * 179.76218 * 22 21 20 24 24 C 1.38234 * 119.99812 * 0.51858 * 23 22 21 25 25 C 1.38239 * 120.00170 * 359.73869 * 24 23 22 26 26 C 1.38226 * 120.00351 * 90.00121 * 21 20 19 27 27 H 1.09000 * 109.47153 * 64.69488 * 1 2 3 28 28 H 1.08999 * 109.47097 * 184.69743 * 1 2 3 29 29 H 1.09004 * 109.46958 * 304.69514 * 1 2 3 30 30 H 1.08999 * 109.47090 * 239.99861 * 2 1 3 31 31 H 1.09008 * 109.46782 * 120.00107 * 2 1 3 32 32 H 1.09002 * 109.46864 * 35.41918 * 4 3 2 33 33 H 1.09000 * 109.47504 * 155.41683 * 4 3 2 34 34 H 0.97002 * 119.99157 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47201 * 292.61577 * 17 15 13 36 36 H 1.09001 * 109.47524 * 52.61549 * 17 15 13 37 37 H 1.09005 * 109.47118 * 172.61599 * 17 15 13 38 38 H 1.08994 * 109.47106 * 299.99678 * 19 18 15 39 39 H 1.08997 * 109.47241 * 59.99889 * 19 18 15 40 40 H 1.08994 * 109.47146 * 299.99750 * 20 19 18 41 41 H 1.08997 * 109.47274 * 60.00006 * 20 19 18 42 42 H 1.08001 * 119.99901 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.00330 * 180.23158 * 23 22 21 44 44 H 1.08003 * 120.00316 * 179.72155 * 24 23 22 45 45 H 1.07996 * 119.99823 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.99873 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3691 2.0341 -1.2636 5 6 3.7845 1.6768 -1.6377 6 1 4.3649 1.0285 -0.9980 7 6 4.3386 2.1775 -2.7968 8 7 3.6317 2.9665 -3.5761 9 14 6.0934 1.7351 -3.2600 10 1 6.2083 0.2627 -3.4144 11 1 6.4489 2.3970 -4.5410 12 1 7.0179 2.1948 -2.1927 13 6 2.1449 2.0512 1.1626 14 8 1.9477 1.4819 2.2152 15 6 2.5315 3.5077 1.1546 16 1 1.9817 4.0253 0.3686 17 6 4.0338 3.6352 0.8948 18 8 2.2157 4.0913 2.4202 19 6 1.8891 5.4809 2.3542 20 6 1.5698 5.9970 3.7587 21 6 1.2247 7.4623 3.6890 22 6 2.2189 8.4136 3.8224 23 6 1.9031 9.7576 3.7536 24 6 0.5917 10.1505 3.5621 25 6 -0.4032 9.1994 3.4341 26 6 -0.0866 7.8553 3.4975 27 1 -0.3633 0.4393 -0.9291 28 1 -0.3633 -1.0242 0.0842 29 1 -0.3633 0.5850 0.8450 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6903 1.6975 -2.0472 33 1 2.2852 3.1148 -1.1497 34 1 4.0214 3.3185 -4.3916 35 1 4.5850 3.2334 1.7450 36 1 4.2958 3.0774 -0.0043 37 1 4.2911 4.6857 0.7586 38 1 2.7354 6.0341 1.9472 39 1 1.0207 5.6199 1.7103 40 1 0.7233 5.4437 4.1654 41 1 2.4380 5.8580 4.4029 42 1 3.2429 8.1066 3.9761 43 1 2.6803 10.5008 3.8540 44 1 0.3443 11.2007 3.5128 45 1 -1.4278 9.5064 3.2849 46 1 -0.8639 7.1121 3.3974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294429807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:50 Heat of formation + Delta-G solvation = -83.310725 kcal Electronic energy + Delta-G solvation = -24954.028499 eV Core-core repulsion = 21421.722296 eV Total energy + Delta-G solvation = -3532.306204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14071 -40.21999 -38.74615 -36.94564 -34.85031 -34.54115 -32.92008 -31.76811 -31.14171 -29.30281 -29.00867 -25.79477 -24.96227 -24.51126 -23.45758 -23.23631 -21.86797 -20.08886 -18.55607 -18.30706 -17.94620 -17.47492 -17.01779 -16.66656 -16.41214 -16.04411 -15.84012 -15.55088 -15.36500 -14.61165 -14.45933 -14.35388 -14.24542 -14.04402 -13.74337 -13.67781 -13.50974 -13.29222 -13.16093 -12.98568 -12.79896 -12.70166 -12.59868 -12.35717 -12.10851 -12.07943 -11.93636 -11.81910 -11.79192 -11.68652 -10.90120 -10.60972 -10.35534 -9.81495 -9.64119 -9.50603 -8.20092 -6.32525 0.41014 0.50593 1.44540 1.45977 1.52553 1.65683 1.96179 2.41619 2.77647 3.00342 3.10780 3.64727 3.87050 3.90372 3.95257 4.12231 4.18266 4.21012 4.23386 4.30541 4.32123 4.40052 4.41437 4.53560 4.61022 4.65061 4.75691 4.81714 4.83969 4.92030 4.94313 4.97615 5.04880 5.15974 5.17729 5.18901 5.29050 5.44278 5.57896 5.63168 5.65540 5.71989 5.80761 6.04781 6.12221 6.12794 6.53330 6.79217 7.26044 7.39255 8.85190 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.003359 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.063347 B = 8332.905087 C = 9503.433629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.596 5.596 4 C 0.247 3.753 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.029 3.971 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.513 3.487 14 O -0.583 6.583 15 C 0.086 3.914 16 H 0.086 0.914 17 C -0.176 4.176 18 O -0.383 6.383 19 C 0.063 3.937 20 C -0.070 4.070 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.269 0.731 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 11.229 9.807 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.173 4.173 8 N -0.553 5.553 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.301 3.699 14 O -0.464 6.464 15 C 0.025 3.975 16 H 0.104 0.896 17 C -0.233 4.233 18 O -0.302 6.302 19 C -0.013 4.013 20 C -0.107 4.107 21 C -0.093 4.093 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.147 4.147 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.159 0.841 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.524 10.924 10.327 16.015 hybrid contribution 0.901 -0.186 -0.802 1.220 sum -4.623 10.738 9.526 15.080 Atomic orbital electron populations 1.22020 0.94685 1.03050 1.01279 1.21420 0.95117 0.82309 1.02448 1.48246 1.62872 1.14323 1.07309 1.19236 0.95070 0.93167 0.79853 1.21508 0.98785 1.30538 1.07109 0.92732 1.25562 1.01334 0.94563 0.95800 1.69993 1.38478 1.32962 1.13901 0.85720 0.80462 0.78572 0.77668 1.19871 1.20761 1.19537 1.20618 0.76550 0.89349 0.83371 1.90564 1.53228 1.70623 1.32034 1.21768 0.98020 0.91045 0.86671 0.89640 1.22391 0.92964 1.03880 1.04079 1.87932 1.89422 1.24364 1.28449 1.22673 0.99513 0.80890 0.98214 1.20379 1.03174 0.91664 0.95527 1.19767 0.94264 0.94382 1.00895 1.21322 0.99444 0.93377 1.00354 1.21464 0.97489 0.95906 0.99516 1.21518 0.92968 1.00687 0.99480 1.21454 1.00659 0.92654 0.99635 1.21312 0.95987 0.97094 1.00304 0.92469 0.89306 0.94179 0.89749 0.91800 0.95840 0.94827 0.92226 0.92617 0.88627 0.90635 0.92421 0.93127 0.90413 0.89930 0.85207 0.84018 0.83828 0.84098 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 10.20 71.98 0.73 -4.05 16 2 C 0.11 4.10 6.14 86.38 0.53 4.63 16 3 N -0.60 -25.60 2.47 -826.19 -2.04 -27.64 16 4 C 0.25 11.49 4.67 85.63 0.40 11.89 16 5 C -0.54 -26.94 6.91 25.60 0.18 -26.76 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.03 1.44 5.46 84.66 0.46 1.90 16 8 N -0.91 -48.27 13.29 21.45 0.28 -47.99 16 9 Si 0.95 40.32 29.54 68.60 2.03 42.35 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 C 0.51 22.82 6.93 87.66 0.61 23.42 16 14 O -0.58 -28.72 16.22 15.42 0.25 -28.47 16 15 C 0.09 3.38 2.30 29.85 0.07 3.45 16 16 H 0.09 3.27 6.31 -2.39 -0.02 3.26 16 17 C -0.18 -6.74 9.30 71.98 0.67 -6.07 16 18 O -0.38 -14.36 9.58 -130.54 -1.25 -15.61 16 19 C 0.06 1.84 5.73 71.98 0.41 2.25 16 20 C -0.07 -1.72 5.72 29.85 0.17 -1.55 16 21 C -0.09 -2.07 5.13 -19.87 -0.10 -2.17 16 22 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.65 9.70 22.27 0.22 -2.44 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.08 3.06 8.03 -2.39 -0.02 3.04 16 31 H 0.06 2.44 7.51 -2.38 -0.02 2.43 16 32 H 0.02 1.15 8.11 -2.39 -0.02 1.13 16 33 H 0.03 1.60 5.67 -2.39 -0.01 1.59 16 34 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 4.16 4.67 -2.39 -0.01 4.15 16 37 H 0.07 2.52 8.06 -2.38 -0.02 2.51 16 38 H 0.06 1.58 8.06 -2.39 -0.02 1.56 16 39 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 40 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 42 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -61.26 380.09 5.45 -55.81 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.94 Total: 25.15 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.23 Total: -3.59 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.75 Total: -75.63 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.00 Total: -44.08 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -61.26 5.45 -55.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294429807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.500 kcal (2) G-P(sol) polarization free energy of solvation -61.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds