Wall clock time and date at job start Tue Mar 31 2020 10:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.46828 * 2 1 4 4 C 1.34237 * 116.99538 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00132 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99495 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.47589 * 300.00094 * 6 4 3 8 8 N 1.46902 * 109.46986 * 180.02562 * 6 4 3 9 9 C 1.46904 * 110.99907 * 84.99933 * 8 6 4 10 10 C 1.53005 * 109.46809 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46751 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00213 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00014 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47180 * 89.99780 * 15 13 11 17 17 H 1.48493 * 109.46951 * 209.99788 * 15 13 11 18 18 H 1.48506 * 109.47006 * 329.99591 * 15 13 11 19 19 C 1.50698 * 109.47238 * 60.00464 * 6 4 3 20 20 C 1.38258 * 120.00350 * 100.20890 * 19 6 4 21 21 C 1.38211 * 120.00136 * 180.25645 * 20 19 6 22 22 C 1.38265 * 119.99661 * 359.76534 * 21 20 19 23 23 C 1.38205 * 120.00044 * 0.02562 * 22 21 20 24 24 C 1.50707 * 119.99867 * 179.97438 * 23 22 21 25 25 C 1.38211 * 119.99834 * 279.99640 * 19 6 4 26 26 C 1.50706 * 120.00152 * 359.97438 * 25 19 6 27 27 H 1.08995 * 109.46907 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47481 * 300.00428 * 1 2 3 29 29 H 1.09008 * 109.46819 * 60.00605 * 1 2 3 30 30 H 1.08991 * 109.47481 * 239.99572 * 2 1 3 31 31 H 1.09008 * 109.46819 * 119.99395 * 2 1 3 32 32 H 1.00907 * 110.99648 * 321.05097 * 8 6 4 33 33 H 1.08999 * 109.47042 * 299.99773 * 9 8 6 34 34 H 1.08999 * 109.46933 * 60.00175 * 9 8 6 35 35 H 1.08999 * 109.46829 * 299.99530 * 10 9 8 36 36 H 1.08999 * 109.47534 * 60.00170 * 10 9 8 37 37 H 0.96998 * 119.99952 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.99908 * 0.04202 * 20 19 6 39 39 H 1.08001 * 120.00363 * 179.78854 * 21 20 19 40 40 H 1.07996 * 119.99493 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.46911 * 269.98246 * 24 23 22 42 42 H 1.08998 * 109.46578 * 29.98126 * 24 23 22 43 43 H 1.09003 * 109.46966 * 149.97908 * 24 23 22 44 44 H 1.08999 * 109.47015 * 269.72797 * 26 25 19 45 45 H 1.09000 * 109.46646 * 29.71950 * 26 25 19 46 46 H 1.09000 * 109.47248 * 149.72667 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4691 -0.8904 8 7 5.3877 2.8606 0.0001 9 6 5.9072 2.7131 -1.3660 10 6 7.4348 2.6361 -1.3251 11 6 7.9678 2.4854 -2.7266 12 1 7.2853 2.4479 -3.5629 13 6 9.3268 2.3943 -2.9413 14 7 10.1577 2.4395 -1.9231 15 14 9.9874 2.2069 -4.6786 16 1 10.2364 3.5499 -5.2611 17 1 11.2577 1.4387 -4.6448 18 1 8.9931 1.4829 -5.5108 19 6 3.4557 3.6739 1.2298 20 6 4.2943 3.7934 2.3225 21 6 3.8659 4.4642 3.4524 22 6 2.6003 5.0199 3.4881 23 6 1.7636 4.9042 2.3942 24 6 0.3840 5.5094 2.4334 25 6 2.1925 4.2336 1.2638 26 6 1.2802 4.1080 0.0708 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 5.7104 2.1103 0.5927 33 1 5.5095 1.8003 -1.8094 34 1 5.6023 3.5710 -1.9653 35 1 7.8328 3.5487 -0.8816 36 1 7.7395 1.7780 -0.7260 37 1 11.1138 2.3758 -2.0741 38 1 5.2830 3.3595 2.2944 39 1 4.5197 4.5546 4.3073 40 1 2.2657 5.5444 4.3709 41 1 -0.3232 4.7767 2.8221 42 1 0.3905 6.3868 3.0802 43 1 0.0871 5.8025 1.4264 44 1 1.4349 4.9565 -0.5958 45 1 1.5030 3.1830 -0.4610 46 1 0.2432 4.0937 0.4062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297504812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:02 Heat of formation + Delta-G solvation = -93.965273 kcal Electronic energy + Delta-G solvation = -25447.996637 eV Core-core repulsion = 21915.228418 eV Total energy + Delta-G solvation = -3532.768220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07391 -40.41214 -38.37196 -37.09144 -35.33983 -34.19347 -33.72977 -32.51984 -31.21665 -28.62915 -27.83519 -27.04441 -25.80587 -24.10254 -22.94130 -22.65038 -21.54008 -21.13967 -19.00406 -18.57106 -18.07668 -17.88429 -17.09722 -16.70754 -16.51455 -15.85723 -15.61799 -15.22840 -14.97374 -14.93624 -14.78220 -14.37875 -14.11016 -13.76009 -13.68580 -13.54226 -13.46079 -13.23706 -13.17712 -12.97137 -12.86971 -12.72323 -12.66271 -12.50148 -12.27289 -12.19705 -11.99401 -11.67461 -11.66959 -11.56641 -11.44843 -11.31374 -10.58957 -9.73022 -9.52163 -9.34696 -8.22007 -6.33874 0.35253 0.52777 1.00517 1.38901 1.41255 1.51997 1.57672 2.38760 2.78270 3.05532 3.11507 3.50656 3.77076 3.89394 3.96613 4.05239 4.06789 4.11863 4.24435 4.30853 4.42475 4.43941 4.50546 4.56243 4.78474 4.83136 4.88248 4.91576 4.92237 4.95621 4.97083 5.04393 5.09491 5.15497 5.32033 5.34188 5.36071 5.48662 5.54937 5.61889 5.66796 5.73891 5.79233 5.94539 6.05385 6.18503 6.24771 6.57111 6.81813 7.35131 8.90458 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003647 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.042360 B = 7675.642058 C = 8828.149403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 O -0.340 6.340 4 C 0.443 3.557 5 O -0.537 6.537 6 C 0.141 3.859 7 H 0.132 0.868 8 N -0.656 5.656 9 C 0.081 3.919 10 C 0.035 3.965 11 C -0.546 4.546 12 H 0.061 0.939 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.969 3.031 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.264 1.264 19 C -0.092 4.092 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.115 4.115 23 C -0.098 4.098 24 C -0.110 4.110 25 C -0.071 4.071 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.344 0.656 33 H 0.015 0.985 34 H 0.073 0.927 35 H 0.001 0.999 36 H -0.014 1.014 37 H 0.264 0.736 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.699 3.220 8.930 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 O -0.255 6.255 4 C 0.285 3.715 5 O -0.427 6.427 6 C 0.028 3.972 7 H 0.149 0.851 8 N -0.286 5.286 9 C -0.048 4.048 10 C -0.002 4.002 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.093 4.093 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.133 4.133 23 C -0.098 4.098 24 C -0.166 4.166 25 C -0.071 4.071 26 C -0.183 4.183 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.020 0.980 36 H 0.004 0.996 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.254 3.569 8.978 27.039 hybrid contribution 1.195 -1.559 -0.818 2.128 sum -24.059 2.011 8.160 25.484 Atomic orbital electron populations 1.21790 0.89577 1.04336 1.04018 1.23337 0.97696 0.79842 1.01938 1.86610 1.22906 1.32861 1.83108 1.25271 0.81520 0.93689 0.71058 1.90687 1.61345 1.43812 1.46848 1.20378 0.88258 0.88141 1.00422 0.85064 1.60986 1.04463 1.50907 1.12288 1.21942 0.96501 0.98667 0.87675 1.18864 0.90413 0.95114 0.95819 1.21568 0.92541 1.50606 0.93681 0.92074 1.25994 0.97369 0.94597 1.01768 1.70110 1.03183 1.51101 1.32687 0.85389 0.77709 0.78603 0.78985 1.19371 1.20699 1.18835 1.19201 0.95172 1.01175 0.93767 1.21086 0.99379 0.99260 0.93234 1.21323 0.97227 0.98723 0.98029 1.21363 0.93483 0.99552 0.98864 1.20070 0.98071 0.98692 0.92998 1.20838 0.91326 1.00762 1.03697 1.19798 0.93409 0.96807 0.97094 1.21102 0.99066 1.03016 0.95075 0.88446 0.90947 0.90769 0.92028 0.92109 0.83571 0.96665 0.90846 0.98043 0.99562 0.92683 0.86839 0.84634 0.83645 0.90234 0.90456 0.90512 0.90360 0.90634 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 10.29 71.98 0.74 -1.09 16 2 C 0.05 0.98 6.19 71.98 0.45 1.42 16 3 O -0.34 -8.76 7.13 -51.49 -0.37 -9.13 16 4 C 0.44 14.39 7.00 71.24 0.50 14.89 16 5 O -0.54 -21.35 15.06 21.97 0.33 -21.02 16 6 C 0.14 4.44 2.08 43.42 0.09 4.53 16 7 H 0.13 3.81 6.93 -2.39 -0.02 3.79 16 8 N -0.66 -25.44 4.93 -499.35 -2.46 -27.90 16 9 C 0.08 3.61 5.32 86.30 0.46 4.07 16 10 C 0.04 1.98 5.23 29.85 0.16 2.13 16 11 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 12 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 15 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 C -0.09 -2.64 5.05 -19.87 -0.10 -2.74 16 20 C -0.11 -3.26 9.33 22.27 0.21 -3.05 16 21 C -0.14 -3.22 10.05 22.27 0.22 -2.99 16 22 C -0.11 -2.29 9.70 22.27 0.22 -2.07 16 23 C -0.10 -1.94 5.88 -19.87 -0.12 -2.06 16 24 C -0.11 -1.36 9.20 71.24 0.66 -0.71 16 25 C -0.07 -1.63 5.75 -19.86 -0.11 -1.75 16 26 C -0.13 -2.30 8.20 71.24 0.58 -1.71 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.06 1.38 8.13 -2.38 -0.02 1.36 16 32 H 0.34 14.16 7.29 -89.69 -0.65 13.51 16 33 H 0.02 0.70 7.62 -2.39 -0.02 0.68 16 34 H 0.07 3.10 8.05 -2.39 -0.02 3.08 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 36 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.11 3.65 6.84 -2.91 -0.02 3.63 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 43 H 0.08 0.84 6.70 -2.39 -0.02 0.83 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.53 4.06 -2.39 -0.01 1.52 16 46 H 0.09 1.21 6.70 -2.39 -0.02 1.19 16 Total: -1.00 -72.26 372.80 4.77 -67.49 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.32 Total: 23.84 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 4.64 Total: -22.61 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.18 Total: -85.94 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.04 Total: -30.15 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.26 4.77 -67.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297504812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.472 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds