Wall clock time and date at job start Tue Mar 31 2020 10:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00048 * 2 1 4 4 C 1.53004 * 110.01965 * 59.51522 * 3 2 1 5 5 N 1.46899 * 109.46968 * 59.23060 * 4 3 2 6 6 C 1.46900 * 111.00103 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47350 * 179.97438 * 6 5 4 8 8 C 1.38305 * 119.92990 * 89.99611 * 7 6 5 9 9 C 1.38097 * 120.06916 * 180.02562 * 8 7 6 10 10 C 1.38880 * 119.93307 * 359.97438 * 9 8 7 11 11 O 1.35752 * 120.06736 * 179.97438 * 10 9 8 12 12 C 1.34827 * 117.00423 * 5.45708 * 11 10 9 13 13 H 1.08003 * 119.99623 * 354.79664 * 12 11 10 14 14 C 1.38653 * 120.00337 * 174.79479 * 12 11 10 15 15 N 1.31553 * 119.99479 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48511 * 109.47360 * 60.00036 * 16 14 12 18 18 H 1.48501 * 109.47278 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47326 * 300.00050 * 16 14 12 20 20 C 1.38879 * 119.86124 * 0.27551 * 10 9 8 21 21 C 1.38105 * 119.92575 * 359.44802 * 20 10 9 22 22 C 1.54265 * 110.03029 * 180.90784 * 3 2 1 23 23 C 1.54970 * 104.16248 * 95.75459 * 22 3 2 24 24 C 1.54890 * 102.77719 * 37.88543 * 23 22 3 25 25 C 1.53870 * 110.03353 * 298.12374 * 3 2 1 26 26 H 1.09007 * 109.46831 * 60.40714 * 1 2 3 27 27 H 1.08997 * 109.47608 * 180.40752 * 1 2 3 28 28 H 1.09000 * 109.46880 * 300.41100 * 1 2 3 29 29 H 1.08997 * 109.47082 * 299.23049 * 4 3 2 30 30 H 1.08994 * 109.46886 * 179.22943 * 4 3 2 31 31 H 1.00901 * 110.99991 * 56.04269 * 5 4 3 32 32 H 1.09002 * 109.46890 * 59.99882 * 6 5 4 33 33 H 1.09004 * 109.47019 * 299.99841 * 6 5 4 34 34 H 1.08006 * 119.96124 * 0.02562 * 8 7 6 35 35 H 1.08002 * 120.03262 * 179.97438 * 9 8 7 36 36 H 0.97008 * 119.99582 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.03748 * 179.72255 * 20 10 9 38 38 H 1.08000 * 119.96123 * 180.27440 * 21 20 10 39 39 H 1.09004 * 110.48365 * 214.39805 * 22 3 2 40 40 H 1.09002 * 110.48610 * 337.03941 * 22 3 2 41 41 H 1.08997 * 110.71178 * 279.57424 * 23 22 3 42 42 H 1.09001 * 110.76266 * 156.21983 * 23 22 3 43 43 H 1.08994 * 110.48699 * 203.41020 * 24 23 22 44 44 H 1.09003 * 110.48399 * 80.75968 * 24 23 22 45 45 H 1.09003 * 110.03184 * 359.95399 * 25 3 2 46 46 H 1.08998 * 110.03678 * 121.38246 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5571 2.0806 1.2389 5 7 1.9657 1.3534 2.4480 6 6 1.5459 2.0694 3.6601 7 6 1.9810 1.2947 4.8773 8 6 3.2200 1.5363 5.4424 9 6 3.6218 0.8277 6.5576 10 6 2.7801 -0.1279 7.1119 11 8 3.1726 -0.8264 8.2077 12 6 4.3409 -0.4670 8.7767 13 1 4.9590 0.2864 8.3112 14 6 4.7488 -1.0646 9.9595 15 7 3.9956 -1.9819 10.5268 16 14 6.3677 -0.5673 10.7474 17 1 6.3368 0.8821 11.0699 18 1 6.5715 -1.3470 11.9947 19 1 7.4819 -0.8408 9.8045 20 6 1.5388 -0.3718 6.5389 21 6 1.1404 0.3442 5.4272 22 6 3.5490 1.1987 -0.0230 23 6 3.9161 1.3324 -1.5226 24 6 2.9072 2.3930 -2.0289 25 6 1.6021 2.0641 -1.2749 26 1 -0.3633 0.5075 -0.8937 27 1 -0.3634 -1.0276 0.0073 28 1 -0.3633 0.5202 0.8863 29 1 0.4720 2.1837 1.2261 30 1 2.0160 3.0691 1.2369 31 1 2.9611 1.1883 2.4517 32 1 0.4607 2.1720 3.6639 33 1 2.0045 3.0581 3.6752 34 1 3.8739 2.2799 5.0112 35 1 4.5896 1.0165 6.9982 36 1 4.2807 -2.3998 11.3545 37 1 0.8839 -1.1174 6.9650 38 1 0.1733 0.1581 4.9839 39 1 3.9962 2.0091 0.5527 40 1 3.8702 0.2318 0.3645 41 1 3.7723 0.3842 -2.0407 42 1 4.9403 1.6865 -1.6397 43 1 2.7608 2.2973 -3.1047 44 1 3.2505 3.3966 -1.7774 45 1 0.9614 1.4362 -1.8941 46 1 1.0812 2.9845 -1.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312633508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:52 Heat of formation + Delta-G solvation = -56.020712 kcal Electronic energy + Delta-G solvation = -24662.945358 eV Core-core repulsion = 21131.822538 eV Total energy + Delta-G solvation = -3531.122820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95927 -39.00439 -36.94846 -35.79490 -35.01453 -32.29411 -30.51406 -30.11283 -29.23375 -28.31917 -26.54866 -25.55263 -24.49746 -23.10018 -21.91136 -21.01017 -20.37617 -19.64267 -17.95990 -17.19438 -16.82209 -16.09050 -15.56165 -15.14483 -14.81413 -14.68414 -14.53953 -14.48956 -14.07975 -13.77261 -13.58700 -13.46828 -13.33868 -12.69873 -12.60981 -12.36155 -12.23673 -11.81215 -11.68191 -11.54951 -11.51366 -11.30643 -11.27207 -11.20219 -10.84359 -10.75161 -10.64023 -10.57622 -10.54897 -10.41203 -9.47767 -9.31290 -8.81547 -8.30381 -8.12916 -7.14996 -6.43101 -4.01969 2.26268 2.31866 3.14011 3.14882 3.17866 3.66626 3.98207 4.18080 4.29859 4.40575 4.60338 4.74918 4.93214 5.02177 5.12196 5.14685 5.21036 5.28178 5.31182 5.32529 5.38545 5.40379 5.44457 5.49695 5.55223 5.61395 5.70980 5.74345 5.78041 5.80689 5.83534 5.86331 5.93668 6.01856 6.07384 6.24733 6.46122 6.74172 6.93097 7.03438 7.11194 7.23126 7.29820 7.39906 7.46580 7.54000 7.86640 8.01970 9.02436 9.73315 10.74955 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002558 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.703510 B =10945.155230 C =11466.698667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.118 3.882 4 C 0.036 3.964 5 N -0.674 5.674 6 C 0.118 3.882 7 C -0.183 4.183 8 C -0.066 4.066 9 C -0.234 4.234 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.194 4.194 21 C -0.051 4.051 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.151 4.151 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.270 0.730 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 9.496 -22.202 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.078 3.922 4 C -0.094 4.094 5 N -0.306 5.306 6 C -0.010 4.010 7 C -0.185 4.185 8 C -0.085 4.085 9 C -0.254 4.254 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.214 4.214 21 C -0.070 4.070 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.189 4.189 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.120 0.880 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.271 8.575 -21.853 23.860 hybrid contribution 1.197 1.283 0.444 1.810 sum -3.073 9.858 -21.408 23.769 Atomic orbital electron populations 1.22699 0.81853 1.02431 0.99625 1.87997 1.19153 1.26136 1.94639 1.22144 0.93957 0.83713 0.92410 1.22605 1.00972 0.94981 0.90853 1.60468 1.21517 1.48472 1.00138 1.20623 0.99656 0.93286 0.87431 1.19090 0.96611 1.03386 0.99390 1.20575 0.94874 0.97884 0.95140 1.21105 1.01920 1.02108 1.00247 1.19404 0.92420 0.89917 0.88039 1.83980 1.38238 1.50513 1.35396 1.21270 0.95447 1.23813 1.06307 0.89174 1.25281 0.99576 0.96010 0.95646 1.70032 1.37107 1.24224 1.18439 0.85790 0.80300 0.78756 0.78626 1.19547 1.20279 1.19504 1.20221 0.95912 1.05228 0.99994 1.20446 0.98202 0.94200 0.94108 1.22367 0.92495 1.03219 0.97007 1.22507 0.98712 0.99242 0.95606 1.22305 0.94943 0.99079 0.99600 1.22812 0.98570 1.00512 0.96986 0.94799 0.90040 0.93414 0.90958 0.94773 0.83797 0.91386 0.95678 0.88018 0.85681 0.91986 0.86590 0.87142 0.90702 0.89785 0.91100 0.91428 0.91636 0.91641 0.90669 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.28 101.05 1.04 1.34 16 2 O -0.36 -4.40 10.17 -35.23 -0.36 -4.76 16 3 C 0.12 1.18 0.77 -89.50 -0.07 1.11 16 4 C 0.04 0.37 3.89 -3.82 -0.01 0.36 16 5 N -0.67 -8.68 6.35 -115.06 -0.73 -9.41 16 6 C 0.12 1.61 5.81 -4.98 -0.03 1.58 16 7 C -0.18 -3.16 5.40 -104.58 -0.56 -3.72 16 8 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 9 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 11 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 12 C -0.39 -11.07 9.49 30.89 0.29 -10.77 16 13 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.53 13.67 55.48 0.76 -24.78 16 16 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 C -0.19 -4.21 9.99 -39.39 -0.39 -4.60 16 21 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 22 C -0.11 -1.08 5.09 -25.03 -0.13 -1.21 16 23 C -0.12 -0.99 6.91 -24.69 -0.17 -1.16 16 24 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 25 C -0.15 -1.22 5.67 -25.61 -0.15 -1.37 16 26 H 0.03 0.27 6.51 -51.93 -0.34 -0.06 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.49 6.45 -51.93 -0.33 0.15 16 29 H 0.07 0.74 6.62 -51.93 -0.34 0.39 16 30 H 0.03 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.34 4.53 7.67 -39.29 -0.30 4.22 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.07 0.66 7.77 -51.93 -0.40 0.26 16 40 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.62 6.54 -51.93 -0.34 0.28 16 46 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -30.89 367.28 -8.88 -39.77 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.23 Total: 6.53 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.84 Total: -23.36 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.03 Total: -34.19 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.36 Total: -9.91 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.89 -8.88 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312633508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.248 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds