Wall clock time and date at job start Tue Mar 31 2020 10:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00048 * 2 1 4 4 C 1.53004 * 110.01965 * 59.51522 * 3 2 1 5 5 N 1.46899 * 109.46968 * 59.23060 * 4 3 2 6 6 C 1.46900 * 111.00103 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47350 * 179.97438 * 6 5 4 8 8 C 1.38305 * 119.92990 * 89.99611 * 7 6 5 9 9 C 1.38097 * 120.06916 * 180.02562 * 8 7 6 10 10 C 1.38880 * 119.93307 * 359.97438 * 9 8 7 11 11 O 1.35752 * 120.06736 * 179.97438 * 10 9 8 12 12 C 1.34827 * 117.00423 * 5.45708 * 11 10 9 13 13 H 1.08003 * 119.99623 * 354.79664 * 12 11 10 14 14 C 1.38653 * 120.00337 * 174.79479 * 12 11 10 15 15 N 1.31553 * 119.99479 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48511 * 109.47360 * 60.00036 * 16 14 12 18 18 H 1.48501 * 109.47278 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47326 * 300.00050 * 16 14 12 20 20 C 1.38879 * 119.86124 * 0.27551 * 10 9 8 21 21 C 1.38105 * 119.92575 * 359.44802 * 20 10 9 22 22 C 1.54265 * 110.03029 * 180.90784 * 3 2 1 23 23 C 1.54970 * 104.16248 * 95.75459 * 22 3 2 24 24 C 1.54890 * 102.77719 * 37.88543 * 23 22 3 25 25 C 1.53870 * 110.03353 * 298.12374 * 3 2 1 26 26 H 1.09007 * 109.46831 * 60.40714 * 1 2 3 27 27 H 1.08997 * 109.47608 * 180.40752 * 1 2 3 28 28 H 1.09000 * 109.46880 * 300.41100 * 1 2 3 29 29 H 1.08997 * 109.47082 * 299.23049 * 4 3 2 30 30 H 1.08994 * 109.46886 * 179.22943 * 4 3 2 31 31 H 1.00901 * 110.99991 * 56.04269 * 5 4 3 32 32 H 1.09002 * 109.46890 * 59.99882 * 6 5 4 33 33 H 1.09004 * 109.47019 * 299.99841 * 6 5 4 34 34 H 1.08006 * 119.96124 * 0.02562 * 8 7 6 35 35 H 1.08002 * 120.03262 * 179.97438 * 9 8 7 36 36 H 0.97008 * 119.99582 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.03748 * 179.72255 * 20 10 9 38 38 H 1.08000 * 119.96123 * 180.27440 * 21 20 10 39 39 H 1.09004 * 110.48365 * 214.39805 * 22 3 2 40 40 H 1.09002 * 110.48610 * 337.03941 * 22 3 2 41 41 H 1.08997 * 110.71178 * 279.57424 * 23 22 3 42 42 H 1.09001 * 110.76266 * 156.21983 * 23 22 3 43 43 H 1.08994 * 110.48699 * 203.41020 * 24 23 22 44 44 H 1.09003 * 110.48399 * 80.75968 * 24 23 22 45 45 H 1.09003 * 110.03184 * 359.95399 * 25 3 2 46 46 H 1.08998 * 110.03678 * 121.38246 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5571 2.0806 1.2389 5 7 1.9657 1.3534 2.4480 6 6 1.5459 2.0694 3.6601 7 6 1.9810 1.2947 4.8773 8 6 3.2200 1.5363 5.4424 9 6 3.6218 0.8277 6.5576 10 6 2.7801 -0.1279 7.1119 11 8 3.1726 -0.8264 8.2077 12 6 4.3409 -0.4670 8.7767 13 1 4.9590 0.2864 8.3112 14 6 4.7488 -1.0646 9.9595 15 7 3.9956 -1.9819 10.5268 16 14 6.3677 -0.5673 10.7474 17 1 6.3368 0.8821 11.0699 18 1 6.5715 -1.3470 11.9947 19 1 7.4819 -0.8408 9.8045 20 6 1.5388 -0.3718 6.5389 21 6 1.1404 0.3442 5.4272 22 6 3.5490 1.1987 -0.0230 23 6 3.9161 1.3324 -1.5226 24 6 2.9072 2.3930 -2.0289 25 6 1.6021 2.0641 -1.2749 26 1 -0.3633 0.5075 -0.8937 27 1 -0.3634 -1.0276 0.0073 28 1 -0.3633 0.5202 0.8863 29 1 0.4720 2.1837 1.2261 30 1 2.0160 3.0691 1.2369 31 1 2.9611 1.1883 2.4517 32 1 0.4607 2.1720 3.6639 33 1 2.0045 3.0581 3.6752 34 1 3.8739 2.2799 5.0112 35 1 4.5896 1.0165 6.9982 36 1 4.2807 -2.3998 11.3545 37 1 0.8839 -1.1174 6.9650 38 1 0.1733 0.1581 4.9839 39 1 3.9962 2.0091 0.5527 40 1 3.8702 0.2318 0.3645 41 1 3.7723 0.3842 -2.0407 42 1 4.9403 1.6865 -1.6397 43 1 2.7608 2.2973 -3.1047 44 1 3.2505 3.3966 -1.7774 45 1 0.9614 1.4362 -1.8941 46 1 1.0812 2.9845 -1.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312633508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:51 Heat of formation + Delta-G solvation = -75.722528 kcal Electronic energy + Delta-G solvation = -24663.799693 eV Core-core repulsion = 21131.822538 eV Total energy + Delta-G solvation = -3531.977155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86728 -40.59442 -38.58183 -36.53062 -36.19049 -34.28013 -31.85926 -31.68094 -29.88867 -29.38618 -27.60828 -27.19249 -25.67850 -24.09558 -23.58516 -22.02796 -21.53497 -20.40574 -19.83615 -18.86660 -17.84246 -16.96140 -16.60368 -16.33398 -16.22852 -15.84124 -15.77015 -15.55840 -15.44790 -15.21707 -15.10705 -14.59426 -14.36701 -14.05266 -13.99151 -13.66489 -13.45504 -13.04889 -12.94776 -12.67076 -12.52619 -12.33031 -12.28088 -12.20826 -12.14636 -11.99350 -11.91592 -11.83475 -11.43014 -11.30555 -11.17025 -10.78770 -10.27102 -9.76561 -9.28649 -8.88231 -8.46605 -6.14961 0.61719 0.68980 1.34759 1.45725 1.51340 2.18289 2.76112 2.93776 3.15026 3.47300 3.54301 3.62054 3.73646 3.93784 4.05256 4.07425 4.22073 4.26800 4.36203 4.47383 4.49835 4.53343 4.57535 4.62501 4.63081 4.67246 4.75120 4.82170 4.84700 4.92104 5.00000 5.04869 5.05264 5.10229 5.12848 5.15615 5.23462 5.32093 5.32635 5.46720 5.58375 5.72235 5.82385 6.03392 6.11027 6.26246 6.39612 6.58380 6.97881 7.79462 8.76639 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002558 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.703510 B =10945.155230 C =11466.698667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.388 6.388 3 C 0.114 3.886 4 C 0.039 3.961 5 N -0.686 5.686 6 C 0.123 3.877 7 C -0.157 4.157 8 C -0.062 4.062 9 C -0.243 4.243 10 C 0.114 3.886 11 O -0.233 6.233 12 C -0.415 4.415 13 H 0.102 0.898 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.207 4.207 21 C -0.048 4.048 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.147 4.147 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.341 0.659 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.273 0.727 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 12.368 -24.933 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.308 6.308 3 C 0.074 3.926 4 C -0.090 4.090 5 N -0.318 5.318 6 C -0.005 4.005 7 C -0.158 4.158 8 C -0.081 4.081 9 C -0.262 4.262 10 C 0.063 3.937 11 O -0.140 6.140 12 C -0.491 4.491 13 H 0.119 0.881 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.181 1.181 18 H -0.196 1.196 19 H -0.181 1.181 20 C -0.227 4.227 21 C -0.066 4.066 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.185 4.185 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.159 0.841 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.159 0.841 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.091 11.480 -24.647 27.496 hybrid contribution 0.947 0.500 0.965 1.442 sum -3.144 11.980 -23.682 26.726 Atomic orbital electron populations 1.22770 0.80971 1.02755 1.00275 1.87967 1.20303 1.27651 1.94837 1.22285 0.93958 0.83167 0.93190 1.22639 1.01356 0.95331 0.89664 1.60399 1.21473 1.49211 1.00699 1.20612 1.00667 0.93338 0.85897 1.19620 0.95273 1.01401 0.99512 1.20946 0.95827 0.97653 0.93627 1.21225 1.01432 1.02111 1.01421 1.19944 0.94189 0.91493 0.88058 1.83943 1.39224 1.53089 1.37767 1.21789 0.95881 1.24377 1.07014 0.88114 1.26611 1.03830 0.95773 0.95912 1.70186 1.39868 1.26510 1.19444 0.84645 0.75023 0.78908 0.77612 1.18116 1.19625 1.18121 1.20458 0.95190 1.05873 1.01131 1.20819 0.99632 0.93440 0.92715 1.22395 0.92574 1.02341 0.98063 1.22500 0.99686 0.99282 0.94520 1.22312 0.94074 0.99157 1.00031 1.22783 0.99069 1.00672 0.96002 0.93052 0.90018 0.93773 0.90432 0.93250 0.84068 0.89999 0.93693 0.84356 0.86375 0.91845 0.87194 0.84112 0.89867 0.91898 0.92060 0.90410 0.90756 0.90598 0.90861 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.28 113.37 1.17 1.67 16 2 O -0.39 -8.82 10.17 -148.98 -1.52 -10.33 16 3 C 0.11 1.98 0.77 -10.07 -0.01 1.98 16 4 C 0.04 0.67 3.89 86.30 0.34 1.01 16 5 N -0.69 -15.29 6.35 -517.94 -3.29 -18.58 16 6 C 0.12 2.81 5.81 85.56 0.50 3.31 16 7 C -0.16 -4.92 5.40 -19.84 -0.11 -5.03 16 8 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 9 C -0.24 -10.71 9.17 22.39 0.21 -10.50 16 10 C 0.11 5.81 6.65 22.58 0.15 5.96 16 11 O -0.23 -14.40 9.76 -22.73 -0.22 -14.62 16 12 C -0.41 -24.56 9.49 67.92 0.64 -23.92 16 13 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 14 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 15 N -0.92 -57.51 13.67 21.61 0.30 -57.21 16 16 Si 1.02 43.31 29.55 68.60 2.03 45.33 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 20 C -0.21 -9.18 9.99 22.39 0.22 -8.95 16 21 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 22 C -0.12 -1.99 5.09 31.70 0.16 -1.83 16 23 C -0.12 -1.72 6.91 31.91 0.22 -1.50 16 24 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 25 C -0.15 -1.93 5.67 31.32 0.18 -1.75 16 26 H 0.05 0.71 6.51 -2.38 -0.02 0.69 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.04 0.80 6.45 -2.39 -0.02 0.78 16 29 H 0.08 1.27 6.62 -2.39 -0.02 1.26 16 30 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.34 7.94 7.67 -89.69 -0.69 7.26 16 32 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.04 0.90 8.09 -2.38 -0.02 0.88 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 36 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.08 1.25 7.77 -2.39 -0.02 1.24 16 40 H 0.06 1.33 8.07 -2.39 -0.02 1.31 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 1.00 6.54 -2.39 -0.02 0.98 16 46 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 Total: -1.00 -71.74 367.28 2.36 -69.38 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.29 Total: 31.02 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 4.78 Total: -44.98 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -2.99 Total: -75.79 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.74 Total: -24.96 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.74 2.36 -69.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312633508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.345 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds