Wall clock time and date at job start Tue Mar 31 2020 10:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99997 * 2 1 4 4 C 1.53002 * 109.47167 * 64.80318 * 3 2 1 5 5 N 1.46495 * 109.47485 * 59.71551 * 4 3 2 6 6 C 1.39776 * 120.00190 * 184.87877 * 5 4 3 7 7 C 1.38954 * 120.00419 * 0.27591 * 6 5 4 8 8 C 1.38020 * 119.99035 * 180.25767 * 7 6 5 9 9 C 1.38896 * 120.00617 * 359.48937 * 8 7 6 10 10 O 1.35793 * 119.99241 * 180.25971 * 9 8 7 11 11 C 1.34816 * 116.99869 * 354.37806 * 10 9 8 12 12 H 1.07994 * 120.00159 * 5.06706 * 11 10 9 13 13 C 1.38627 * 119.99656 * 185.06309 * 11 10 9 14 14 N 1.31575 * 120.00237 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99572 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47310 * 90.00404 * 15 13 11 17 17 H 1.48503 * 109.46599 * 210.00343 * 15 13 11 18 18 H 1.48498 * 109.47205 * 329.99822 * 15 13 11 19 19 C 1.38896 * 120.01356 * 0.23075 * 9 8 7 20 20 C 1.38016 * 120.00614 * 0.02867 * 19 9 8 21 21 C 1.53001 * 109.46871 * 184.79947 * 3 2 1 22 22 C 1.53001 * 109.47199 * 59.99747 * 21 3 2 23 23 C 1.52998 * 109.47006 * 60.00070 * 22 21 3 24 24 C 1.53001 * 109.47084 * 300.00000 * 23 22 21 25 25 C 1.52998 * 109.47156 * 304.79769 * 3 2 1 26 26 H 1.08995 * 109.47075 * 65.05450 * 1 2 3 27 27 H 1.09000 * 109.47324 * 185.06015 * 1 2 3 28 28 H 1.09006 * 109.47208 * 305.05568 * 1 2 3 29 29 H 1.08997 * 109.46607 * 299.71329 * 4 3 2 30 30 H 1.08997 * 109.46743 * 179.72042 * 4 3 2 31 31 H 0.97000 * 119.99785 * 4.87800 * 5 4 3 32 32 H 1.08000 * 120.00502 * 0.02562 * 7 6 5 33 33 H 1.07994 * 119.99485 * 179.76484 * 8 7 6 34 34 H 0.96998 * 120.00320 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.99624 * 180.02562 * 19 9 8 36 36 H 1.08002 * 119.99910 * 179.97438 * 20 19 9 37 37 H 1.08999 * 109.47302 * 180.02562 * 21 3 2 38 38 H 1.09001 * 109.47220 * 300.00411 * 21 3 2 39 39 H 1.08999 * 109.47333 * 300.00397 * 22 21 3 40 40 H 1.08999 * 109.47398 * 179.97438 * 22 21 3 41 41 H 1.09003 * 109.47444 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.47471 * 59.99843 * 23 22 21 43 43 H 1.08999 * 109.47302 * 299.99702 * 24 23 22 44 44 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.46850 * 60.00409 * 25 3 2 46 46 H 1.08999 * 109.46808 * 180.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6566 2.0212 1.3053 5 7 2.1723 1.2510 2.4398 6 6 1.8840 1.6539 3.7468 7 6 1.1035 2.7816 3.9701 8 6 0.8234 3.1822 5.2609 9 6 1.3128 2.4522 6.3364 10 8 1.0327 2.8435 7.6062 11 6 0.3749 4.0108 7.7558 12 1 0.0234 4.5478 6.8872 13 6 0.1496 4.5217 9.0246 14 7 0.5782 3.8677 10.0828 15 14 -0.7624 6.1387 9.2319 16 1 -2.2188 5.8739 9.3505 17 1 -0.2824 6.8239 10.4589 18 1 -0.5110 7.0038 8.0514 19 6 2.0881 1.3215 6.1134 20 6 2.3730 0.9235 4.8229 21 6 3.5308 1.1866 -0.1207 22 6 3.8845 0.4708 -1.4259 23 6 3.3399 1.2716 -2.6104 24 6 1.8193 1.3904 -2.4897 25 6 1.4656 2.1062 -1.1845 26 1 -0.3633 0.4334 -0.9317 27 1 -0.3634 -1.0236 0.0906 28 1 -0.3634 0.5903 0.8413 29 1 0.5735 2.1102 1.3888 30 1 2.1041 3.0150 1.3073 31 1 2.7137 0.4614 2.2839 32 1 0.7192 3.3467 3.1338 33 1 0.2201 4.0609 5.4345 34 1 0.4209 4.2254 10.9706 35 1 2.4681 0.7538 6.9498 36 1 2.9762 0.0445 4.6496 37 1 3.9743 2.1823 -0.1202 38 1 3.9188 0.6161 0.7231 39 1 3.4411 -0.5249 -1.4259 40 1 4.9678 0.3866 -1.5121 41 1 3.5922 0.7619 -3.5403 42 1 3.7832 2.2674 -2.6105 43 1 1.3759 0.3946 -2.4897 44 1 1.4313 1.9612 -3.3333 45 1 0.3823 2.1908 -1.0985 46 1 1.9093 3.1018 -1.1847 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319545242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:02 Heat of formation + Delta-G solvation = -75.331358 kcal Electronic energy + Delta-G solvation = -25116.658553 eV Core-core repulsion = 21584.698360 eV Total energy + Delta-G solvation = -3531.960192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -41.21238 -40.54684 -38.57161 -36.75694 -35.63974 -34.09264 -31.89713 -31.86828 -31.65132 -28.97867 -27.55670 -27.15680 -26.19862 -23.66111 -23.56795 -22.38819 -21.58733 -20.55260 -19.82461 -18.97759 -17.68999 -17.26835 -16.97326 -16.30685 -16.21267 -15.97235 -15.89729 -15.54510 -15.39087 -14.90853 -14.81642 -14.37127 -14.29803 -14.23844 -14.13609 -13.44457 -13.41233 -13.32307 -13.11871 -13.00020 -12.81734 -12.76619 -12.51919 -12.29408 -12.11350 -12.09064 -11.96404 -11.42094 -11.29430 -11.09720 -10.92612 -10.80517 -10.36604 -10.17483 -9.77767 -8.39085 -7.92142 -6.02732 0.58557 0.93885 1.36424 1.46388 1.53996 2.22738 2.54279 2.91564 2.97215 3.25856 3.62458 3.68197 3.70052 3.83431 4.11053 4.16948 4.19476 4.26602 4.34853 4.44140 4.47270 4.56789 4.58549 4.61723 4.64820 4.67206 4.74217 4.77927 4.87399 4.93205 4.94861 5.07301 5.11654 5.13943 5.24816 5.28531 5.28963 5.35389 5.40904 5.51314 5.54798 5.58834 5.78645 5.98069 6.11430 6.30524 6.61513 7.03255 7.07034 7.93853 8.85539 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.002653 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.437335 B =10550.440738 C =10913.979709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.381 6.381 3 C 0.116 3.884 4 C 0.105 3.895 5 N -0.736 5.736 6 C 0.154 3.846 7 C -0.150 4.150 8 C -0.193 4.193 9 C 0.062 3.938 10 O -0.243 6.243 11 C -0.406 4.406 12 H 0.097 0.903 13 C -0.029 4.029 14 N -0.927 5.927 15 Si 1.017 2.983 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.254 1.254 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.143 4.143 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.402 0.598 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.270 0.730 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -4.401 -28.304 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.300 6.300 3 C 0.076 3.924 4 C -0.020 4.020 5 N -0.371 5.371 6 C 0.053 3.947 7 C -0.173 4.173 8 C -0.213 4.213 9 C 0.012 3.988 10 O -0.151 6.151 11 C -0.482 4.482 12 H 0.115 0.885 13 C -0.225 4.225 14 N -0.567 5.567 15 Si 0.836 3.164 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.177 1.177 19 C -0.173 4.173 20 C -0.165 4.165 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.181 4.181 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.238 0.762 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.162 0.838 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.059 -4.528 -28.021 28.549 hybrid contribution -0.528 0.547 0.794 1.099 sum 2.531 -3.981 -27.227 27.633 Atomic orbital electron populations 1.22836 0.81027 1.03026 1.00382 1.87933 1.20069 1.27168 1.94819 1.21692 0.94801 0.83560 0.92330 1.21873 0.98663 0.95429 0.86007 1.44158 1.60114 1.32433 1.00422 1.17532 0.97203 0.94446 0.85485 1.20464 1.02866 0.98326 0.95601 1.21036 1.05298 1.02338 0.92608 1.19718 0.97643 0.96182 0.85254 1.83934 1.69575 1.38644 1.22914 1.21744 1.34218 0.97641 0.94638 0.88525 1.26533 0.98866 1.03493 0.93602 1.70202 1.46824 1.40910 0.98753 0.84614 0.77816 0.75197 0.78734 1.18934 1.19728 1.17732 1.20227 1.02092 0.97266 0.97687 1.20409 1.04502 1.01770 0.89778 1.21526 0.91838 1.01967 0.98792 1.21439 1.00641 0.99256 0.93761 1.21539 0.95378 1.00543 0.98093 1.21422 0.96504 1.00618 0.96350 1.22096 1.01613 0.99878 0.94475 0.92579 0.89371 0.94581 0.92707 0.91859 0.76150 0.85011 0.86492 0.92148 0.86793 0.83814 0.89948 0.91825 0.92225 0.91406 0.91418 0.91583 0.92220 0.90968 0.91028 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.02 113.37 1.14 1.52 16 2 O -0.38 -7.08 8.79 -148.98 -1.31 -8.39 16 3 C 0.12 1.87 0.37 -10.79 0.00 1.86 16 4 C 0.11 2.12 3.65 86.38 0.31 2.44 16 5 N -0.74 -18.08 5.37 -339.27 -1.82 -19.91 16 6 C 0.15 5.07 6.66 38.22 0.25 5.32 16 7 C -0.15 -5.44 9.28 22.39 0.21 -5.23 16 8 C -0.19 -8.74 9.16 22.38 0.20 -8.54 16 9 C 0.06 3.19 6.65 22.59 0.15 3.34 16 10 O -0.24 -15.14 9.76 -23.08 -0.23 -15.37 16 11 C -0.41 -24.43 9.48 67.91 0.64 -23.79 16 12 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 13 C -0.03 -1.69 5.49 84.82 0.47 -1.23 16 14 N -0.93 -58.74 13.67 21.61 0.30 -58.44 16 15 Si 1.02 44.21 29.55 68.60 2.03 46.24 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 19 C -0.15 -6.77 9.98 22.37 0.22 -6.54 16 20 C -0.14 -5.01 9.89 22.39 0.22 -4.79 16 21 C -0.10 -1.57 4.77 30.59 0.15 -1.42 16 22 C -0.11 -1.51 5.78 30.59 0.18 -1.33 16 23 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 24 C -0.11 -1.29 5.71 30.59 0.17 -1.12 16 25 C -0.14 -1.83 4.22 30.59 0.13 -1.70 16 26 H 0.06 0.73 6.35 -2.39 -0.02 0.71 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 0.66 6.33 -2.38 -0.02 0.65 16 29 H 0.05 1.16 6.09 -2.39 -0.01 1.15 16 30 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.40 9.03 7.13 -92.71 -0.66 8.36 16 32 H 0.13 4.00 6.71 -2.91 -0.02 3.98 16 33 H 0.12 5.38 5.63 -2.91 -0.02 5.36 16 34 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.06 6.78 -2.39 -0.02 1.04 16 39 H 0.06 0.94 7.68 -2.39 -0.02 0.92 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.06 0.80 7.35 -2.39 -0.02 0.78 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.89 6.60 -2.39 -0.02 0.87 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.15 356.89 3.92 -68.24 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.32 Total: 29.97 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 4.63 Total: -42.34 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.53 Total: -78.34 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -1.54 Total: -23.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.15 3.92 -68.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319545242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.096 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds