Wall clock time and date at job start Tue Mar 31 2020 10:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00066 * 2 1 4 4 C 1.53006 * 109.47207 * 64.47125 * 3 2 1 5 5 N 1.46497 * 109.47044 * 59.84457 * 4 3 2 6 6 C 1.39671 * 119.99910 * 174.86663 * 5 4 3 7 7 C 1.39001 * 120.03887 * 359.97438 * 6 5 4 8 8 C 1.38153 * 120.06053 * 180.02562 * 7 6 5 9 9 C 1.38171 * 120.14269 * 0.23289 * 8 7 6 10 10 C 1.38925 * 120.07895 * 359.49303 * 9 8 7 11 11 O 1.35748 * 120.02865 * 180.25088 * 10 9 8 12 12 C 1.34832 * 116.99206 * 185.95457 * 11 10 9 13 13 H 1.08001 * 120.00635 * 5.27612 * 12 11 10 14 14 C 1.38660 * 119.99689 * 185.28062 * 12 11 10 15 15 N 1.31559 * 119.99680 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00002 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47304 * 60.00050 * 16 14 12 18 18 H 1.48503 * 109.47013 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47353 * 300.00117 * 16 14 12 20 20 C 1.38751 * 120.03792 * 180.02562 * 6 5 4 21 21 C 1.52996 * 109.47371 * 184.47015 * 3 2 1 22 22 C 1.53007 * 109.47172 * 60.00127 * 21 3 2 23 23 C 1.53004 * 109.46845 * 59.99810 * 22 21 3 24 24 C 1.52996 * 109.47391 * 300.00056 * 23 22 21 25 25 C 1.53004 * 109.47084 * 304.47474 * 3 2 1 26 26 H 1.08998 * 109.46831 * 175.31622 * 1 2 3 27 27 H 1.08997 * 109.46995 * 295.31655 * 1 2 3 28 28 H 1.09001 * 109.47041 * 55.31735 * 1 2 3 29 29 H 1.09006 * 109.46524 * 299.84578 * 4 3 2 30 30 H 1.08999 * 109.47234 * 179.84893 * 4 3 2 31 31 H 0.97002 * 120.00153 * 354.86128 * 5 4 3 32 32 H 1.08003 * 119.97376 * 0.02787 * 7 6 5 33 33 H 1.08002 * 119.92718 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.96581 * 179.72005 * 9 8 7 35 35 H 0.97003 * 120.00139 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.07098 * 359.95435 * 20 6 5 37 37 H 1.09003 * 109.47366 * 179.97438 * 21 3 2 38 38 H 1.09001 * 109.47237 * 300.00205 * 21 3 2 39 39 H 1.09003 * 109.46818 * 300.00143 * 22 21 3 40 40 H 1.08994 * 109.47250 * 179.97438 * 22 21 3 41 41 H 1.09002 * 109.46909 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47140 * 60.00531 * 23 22 21 43 43 H 1.09003 * 109.47366 * 300.00336 * 24 23 22 44 44 H 1.09001 * 109.47237 * 180.02562 * 24 23 22 45 45 H 1.08994 * 109.47226 * 59.99548 * 25 3 2 46 46 H 1.09003 * 109.47140 * 180.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6498 2.0243 1.3017 5 7 2.1621 1.2583 2.4405 6 6 2.0493 1.7713 3.7347 7 6 1.4516 3.0089 3.9430 8 6 1.3402 3.5170 5.2228 9 6 1.8266 2.7996 6.2989 10 6 2.4199 1.5596 6.0981 11 8 2.8928 0.8534 7.1566 12 6 3.5659 -0.2824 6.8829 13 1 3.7819 -0.5488 5.8588 14 6 3.9809 -1.1085 7.9164 15 7 3.7182 -0.7837 9.1639 16 14 4.9127 -2.6824 7.5373 17 1 6.1680 -2.3528 6.8155 18 1 5.2407 -3.3812 8.8059 19 1 4.0710 -3.5640 6.6892 20 6 2.5347 1.0468 4.8138 21 6 3.5314 1.1865 -0.1124 22 6 3.8920 0.4677 -1.4141 23 6 3.3535 1.2658 -2.6033 24 6 1.8323 1.3847 -2.4909 25 6 1.4718 2.1035 -1.1892 26 1 -0.3633 -1.0242 -0.0839 27 1 -0.3633 0.4394 0.9289 28 1 -0.3633 0.5848 -0.8451 29 1 0.5661 2.1115 1.3804 30 1 2.0954 3.0190 1.3029 31 1 2.5796 0.3947 2.2958 32 1 1.0738 3.5737 3.1035 33 1 0.8758 4.4790 5.3821 34 1 1.7421 3.2016 7.2977 35 1 4.0081 -1.3618 9.8869 36 1 2.9997 0.0850 4.6547 37 1 3.9748 2.1823 -0.1129 38 1 3.9150 0.6180 0.7348 39 1 3.4486 -0.5281 -1.4141 40 1 4.9757 0.3834 -1.4945 41 1 3.6100 0.7535 -3.5307 42 1 3.7969 2.2616 -2.6033 43 1 1.3890 0.3889 -2.4909 44 1 1.4487 1.9529 -3.3384 45 1 0.3881 2.1882 -1.1091 46 1 1.9155 3.0991 -1.1895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320008162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:09 Heat of formation + Delta-G solvation = -59.458384 kcal Electronic energy + Delta-G solvation = -25442.406775 eV Core-core repulsion = 21911.134886 eV Total energy + Delta-G solvation = -3531.271889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.35434 -38.88479 -36.85501 -36.03103 -34.46777 -32.16114 -31.20105 -31.08038 -29.02657 -28.01242 -26.78323 -25.35105 -25.16330 -22.86571 -21.83960 -21.30191 -20.28315 -19.81759 -17.82725 -17.39450 -16.50326 -16.12495 -15.67748 -15.23556 -15.11683 -14.78366 -14.42689 -14.21835 -14.09652 -13.66882 -13.65225 -13.47728 -13.17781 -12.87019 -12.68190 -12.55791 -12.32543 -12.16255 -12.08976 -11.58170 -11.45330 -11.32331 -11.28887 -10.90154 -10.79376 -10.72627 -10.62828 -10.54259 -10.36671 -10.10479 -9.59820 -9.39363 -9.29408 -8.71074 -7.29497 -6.70843 -6.36734 -3.95717 2.43410 2.62565 3.17931 3.19509 3.21481 3.49474 3.94496 4.04083 4.41034 4.41735 4.53061 4.75136 4.85646 4.96542 5.02293 5.10534 5.20958 5.23599 5.27663 5.31208 5.36724 5.40285 5.46982 5.51380 5.58935 5.65809 5.73254 5.76783 5.80052 5.90979 5.94251 6.02698 6.03555 6.09130 6.24510 6.32662 6.42557 6.68708 6.71442 7.06540 7.11782 7.20349 7.43539 7.54003 7.73123 8.08830 8.10112 8.29015 9.09522 9.82539 10.81684 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.003532 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.228775 B = 7926.268751 C = 9049.418714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.369 6.369 3 C 0.110 3.890 4 C 0.110 3.890 5 N -0.745 5.745 6 C 0.250 3.750 7 C -0.282 4.282 8 C -0.040 4.040 9 C -0.238 4.238 10 C 0.190 3.810 11 O -0.179 6.179 12 C -0.388 4.388 13 H 0.090 0.910 14 C 0.038 3.962 15 N -0.866 5.866 16 Si 0.939 3.061 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.301 4.301 21 C -0.103 4.103 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.144 4.144 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.398 0.602 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.269 0.731 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 4.348 -22.810 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.071 3.929 4 C -0.016 4.016 5 N -0.378 5.378 6 C 0.149 3.851 7 C -0.304 4.304 8 C -0.059 4.059 9 C -0.259 4.259 10 C 0.135 3.865 11 O -0.082 6.082 12 C -0.465 4.465 13 H 0.107 0.893 14 C -0.165 4.165 15 N -0.501 5.501 16 Si 0.764 3.236 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.325 4.325 21 C -0.140 4.140 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.182 4.182 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.234 0.766 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.752 4.249 -22.441 23.146 hybrid contribution 0.290 -0.874 -0.254 0.955 sum -3.462 3.375 -22.695 23.205 Atomic orbital electron populations 1.22799 0.81626 1.02546 1.00305 1.87961 1.19393 1.26601 1.94783 1.21720 0.94541 0.83812 0.92876 1.21714 0.98555 0.95515 0.85781 1.44396 1.67905 1.22952 1.02544 1.17473 0.92143 0.91835 0.83654 1.20046 1.15498 0.98092 0.96809 1.20360 0.96254 0.97522 0.91772 1.20025 1.11206 0.95673 0.98947 1.19080 0.89762 0.90708 0.86943 1.83998 1.61769 1.34006 1.28393 1.21251 1.32693 0.98010 0.94511 0.89272 1.25262 0.97811 0.98961 0.94504 1.70034 1.43982 1.37523 0.98555 0.85817 0.79530 0.80319 0.77968 1.19578 1.20339 1.19592 1.20500 1.16616 1.03827 0.91581 1.21504 0.92123 1.01689 0.98729 1.21481 1.00288 0.99885 0.93807 1.21534 0.95520 1.00306 0.98249 1.21435 0.96406 1.00980 0.96305 1.22088 1.01372 0.99739 0.94978 0.89892 0.93589 0.93808 0.92855 0.91774 0.76641 0.88105 0.87317 0.86985 0.92103 0.85857 0.90572 0.90758 0.91062 0.92063 0.92151 0.92194 0.91412 0.92159 0.91276 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.13 101.05 1.02 1.25 16 2 O -0.37 -4.22 8.68 -35.23 -0.31 -4.52 16 3 C 0.11 1.13 0.36 -90.62 -0.03 1.10 16 4 C 0.11 1.34 3.63 -4.04 -0.01 1.33 16 5 N -0.75 -11.53 5.26 -58.65 -0.31 -11.84 16 6 C 0.25 4.81 6.65 -83.81 -0.56 4.26 16 7 C -0.28 -5.13 9.28 -39.33 -0.37 -5.50 16 8 C -0.04 -0.76 10.03 -39.64 -0.40 -1.15 16 9 C -0.24 -5.30 9.99 -39.35 -0.39 -5.69 16 10 C 0.19 4.79 6.64 -39.13 -0.26 4.53 16 11 O -0.18 -5.27 9.76 0.05 0.00 -5.27 16 12 C -0.39 -11.17 9.44 30.89 0.29 -10.87 16 13 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 15 N -0.87 -25.96 13.67 55.48 0.76 -25.21 16 16 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C -0.30 -6.85 8.98 -39.20 -0.35 -7.20 16 21 C -0.10 -1.05 4.77 -26.73 -0.13 -1.18 16 22 C -0.12 -1.06 5.78 -26.73 -0.15 -1.22 16 23 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 24 C -0.11 -0.87 5.76 -26.73 -0.15 -1.03 16 25 C -0.14 -1.18 4.23 -26.73 -0.11 -1.30 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.49 6.76 -51.93 -0.35 0.14 16 28 H 0.04 0.35 6.07 -51.93 -0.32 0.04 16 29 H 0.05 0.65 6.73 -51.93 -0.35 0.30 16 30 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.40 6.15 7.32 -40.82 -0.30 5.85 16 32 H 0.10 1.58 6.71 -52.48 -0.35 1.23 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.12 2.84 5.71 -52.48 -0.30 2.55 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.87 6.98 -51.93 -0.36 0.51 16 39 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.58 7.60 -51.93 -0.39 0.18 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.53 6.39 -51.93 -0.33 0.20 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -31.41 357.67 -8.42 -39.83 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.07 Total: 8.37 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.86 Total: -22.78 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.45 Total: -37.05 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.31 Total: -9.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.41 -8.42 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320008162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.633 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds