Wall clock time and date at job start Tue Mar 31 2020 10:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45204 * 109.46947 * 2 1 4 4 C 1.34233 * 116.99644 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00096 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46994 * 59.99793 * 6 4 3 8 8 C 1.53001 * 109.46977 * 300.00327 * 6 4 3 9 9 C 1.52996 * 109.47204 * 180.02562 * 6 4 3 10 10 H 1.09005 * 109.47215 * 304.99565 * 9 6 4 11 11 C 1.52991 * 109.47248 * 65.00143 * 9 6 4 12 12 N 1.46903 * 109.46867 * 185.00194 * 9 6 4 13 13 C 1.46900 * 110.99866 * 154.99806 * 12 9 6 14 14 C 1.50699 * 109.47148 * 179.97438 * 13 12 9 15 15 C 1.38642 * 119.74790 * 269.72794 * 14 13 12 16 16 C 1.37619 * 120.24593 * 179.72277 * 15 14 13 17 17 C 1.40717 * 119.74263 * 0.56711 * 16 15 14 18 18 C 1.41401 * 120.24229 * 179.68443 * 17 16 15 19 19 H 1.07999 * 119.99753 * 24.41228 * 18 17 16 20 20 C 1.39941 * 119.99804 * 204.41687 * 18 17 16 21 21 N 1.30824 * 120.00470 * 17.85260 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 197.85599 * 20 18 17 23 23 H 1.48505 * 109.47042 * 89.99588 * 22 20 18 24 24 H 1.48500 * 109.47246 * 209.99417 * 22 20 18 25 25 H 1.48497 * 109.47021 * 329.99790 * 22 20 18 26 26 C 1.40714 * 119.51429 * 359.71199 * 17 16 15 27 27 C 1.37620 * 119.74569 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.46820 * 59.99851 * 1 2 3 29 29 H 1.08991 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46916 * 300.00671 * 1 2 3 31 31 H 1.08992 * 109.46814 * 239.99553 * 2 1 3 32 32 H 1.09005 * 109.46870 * 119.99406 * 2 1 3 33 33 H 1.09005 * 109.46875 * 179.97438 * 8 6 4 34 34 H 1.08999 * 109.46823 * 299.99571 * 8 6 4 35 35 H 1.09001 * 109.47318 * 59.99603 * 8 6 4 36 36 H 1.09000 * 109.47287 * 180.02562 * 11 9 6 37 37 H 1.09007 * 109.47471 * 299.99940 * 11 9 6 38 38 H 1.09002 * 109.47793 * 60.00003 * 11 9 6 39 39 H 1.00897 * 110.99565 * 278.95140 * 12 9 6 40 40 H 1.09002 * 109.47572 * 300.00338 * 13 12 9 41 41 H 1.09008 * 109.47255 * 59.99933 * 13 12 9 42 42 H 1.07994 * 119.87561 * 359.97438 * 15 14 13 43 43 H 1.07997 * 120.12591 * 180.28177 * 16 15 14 44 44 H 0.97001 * 120.00490 * 180.02562 * 21 20 18 45 45 H 1.07995 * 120.12834 * 179.97438 * 26 17 16 46 46 H 1.07998 * 119.87920 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.5852 3.4698 0.8888 8 6 3.4488 3.6840 -1.2504 9 6 5.4487 2.8572 -0.0023 10 1 5.7813 2.2497 0.8394 11 6 5.9250 2.2217 -1.3099 12 7 6.0100 4.2095 0.1178 13 6 7.3575 4.1702 0.7014 14 6 7.8998 5.5721 0.8082 15 6 8.6264 6.1106 -0.2427 16 6 9.1215 7.3919 -0.1584 17 6 8.8979 8.1516 1.0048 18 6 9.4075 9.4667 1.1054 19 1 9.6108 10.0369 0.2110 20 6 9.6484 10.0294 2.3639 21 7 9.7435 9.2596 3.4174 22 14 9.8343 11.8798 2.5395 23 1 8.5044 12.4886 2.7970 24 1 10.7443 12.1805 3.6738 25 1 10.4016 12.4413 1.2873 26 6 8.1641 7.5926 2.0674 27 6 7.6729 6.3117 1.9586 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8651 4.6914 -1.2506 34 1 3.7844 3.1516 -2.1404 35 1 2.3603 3.7410 -1.2500 36 1 7.0135 2.1642 -1.3105 37 1 5.5086 1.2183 -1.3991 38 1 5.5925 2.8292 -2.1516 39 1 6.0162 4.6790 -0.7752 40 1 7.3109 3.7216 1.6937 41 1 8.0122 3.5753 0.0643 42 1 8.8011 5.5238 -1.1323 43 1 9.6834 7.8110 -0.9799 44 1 9.9101 9.6496 4.2897 45 1 7.9869 8.1667 2.9649 46 1 7.1090 5.8808 2.7726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338297928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:58 Heat of formation + Delta-G solvation = -99.524543 kcal Electronic energy + Delta-G solvation = -24359.534972 eV Core-core repulsion = 20826.525684 eV Total energy + Delta-G solvation = -3533.009288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76836 -39.67798 -38.65219 -37.39343 -35.77212 -34.18615 -32.61461 -31.62971 -31.07593 -29.70453 -27.71506 -26.52962 -25.05942 -24.20408 -22.87955 -22.65017 -21.66145 -20.51641 -19.18781 -18.66073 -17.68810 -17.50490 -17.12023 -16.75659 -15.90210 -15.81406 -15.63647 -15.36435 -15.02233 -14.84084 -14.59800 -14.19093 -14.10159 -13.77031 -13.57840 -13.42308 -13.32050 -13.17696 -13.00887 -12.91503 -12.78311 -12.71994 -12.55084 -12.49772 -12.23195 -12.11098 -11.84994 -11.70797 -11.48467 -11.40312 -11.25116 -11.13757 -10.98493 -9.35540 -9.30634 -9.11956 -8.61393 -6.30407 0.97165 1.15755 1.19401 1.38846 1.51558 1.51989 1.66474 2.22131 2.72550 3.38880 3.59401 3.82515 3.83944 3.98409 4.01368 4.09149 4.26928 4.31898 4.34753 4.36182 4.41690 4.54761 4.62531 4.67796 4.74070 4.84964 4.88393 4.92882 4.97867 5.00158 5.01550 5.10733 5.14597 5.19189 5.24680 5.39104 5.43222 5.49957 5.50883 5.75145 5.97252 6.12563 6.15916 6.30936 6.42911 6.55804 6.73323 6.75043 6.97708 7.08150 8.35571 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030072 B = 0.002313 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.889029 B =12103.593777 C =12434.649151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.471 3.529 5 O -0.533 6.533 6 C -0.069 4.069 7 H 0.118 0.882 8 C -0.140 4.140 9 C 0.102 3.898 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.677 5.677 13 C 0.133 3.867 14 C -0.197 4.197 15 C -0.084 4.084 16 C -0.243 4.243 17 C 0.078 3.922 18 C -0.502 4.502 19 H 0.074 0.926 20 C 0.034 3.966 21 N -0.827 5.827 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.192 4.192 27 C -0.085 4.085 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.346 0.654 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.287 0.713 45 H 0.097 0.903 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 -13.958 -6.536 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.422 6.422 6 C -0.089 4.089 7 H 0.136 0.864 8 C -0.197 4.197 9 C -0.008 4.008 10 H 0.088 0.912 11 C -0.243 4.243 12 N -0.309 5.309 13 C 0.005 3.995 14 C -0.198 4.198 15 C -0.102 4.102 16 C -0.262 4.262 17 C 0.076 3.924 18 C -0.532 4.532 19 H 0.092 0.908 20 C -0.181 4.181 21 N -0.453 5.453 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.182 1.182 26 C -0.211 4.211 27 C -0.104 4.104 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.165 0.835 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.592 -14.160 -5.682 21.815 hybrid contribution 1.020 0.266 -0.280 1.091 sum -14.572 -13.894 -5.962 20.998 Atomic orbital electron populations 1.21822 0.90495 1.04313 1.03716 1.23281 0.97064 0.79357 1.02455 1.86523 1.23964 1.33563 1.83547 1.24004 0.80639 0.92793 0.71011 1.90621 1.60823 1.44187 1.46610 1.21014 0.95105 0.88922 1.03864 0.86444 1.21793 1.02470 1.00851 0.94608 1.21217 0.91968 0.89537 0.98094 0.91200 1.22598 1.01400 1.02240 0.98015 1.60509 1.22780 1.16382 1.31182 1.20445 0.87902 0.92389 0.98732 1.19277 1.07552 0.97305 0.95711 1.20686 0.97454 0.94602 0.97484 1.21139 1.09002 0.96085 0.99985 1.17978 0.89340 0.93171 0.91903 1.19832 1.40171 0.99537 0.93621 0.90829 1.26757 0.91689 1.04981 0.94660 1.69885 1.35230 1.39127 1.01032 0.85213 0.79174 0.76377 0.78981 1.18700 1.19316 1.18234 1.21273 1.02902 0.96544 1.00426 1.20726 0.98498 0.94126 0.97017 0.91167 0.88264 0.91417 0.91270 0.91572 0.90225 0.91734 0.90580 0.92917 0.91579 0.91043 0.83470 0.91755 0.94823 0.86681 0.88718 0.90244 0.88476 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 71.98 0.74 -0.67 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.36 -7.22 10.12 -51.44 -0.52 -7.74 16 4 C 0.47 10.78 6.97 71.24 0.50 11.27 16 5 O -0.53 -14.65 13.72 21.96 0.30 -14.35 16 6 C -0.07 -1.46 2.82 -11.54 -0.03 -1.50 16 7 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 8 C -0.14 -2.45 8.45 71.98 0.61 -1.84 16 9 C 0.10 2.47 2.02 44.91 0.09 2.56 16 10 H 0.07 1.90 7.61 -2.38 -0.02 1.88 16 11 C -0.18 -4.13 8.41 71.98 0.61 -3.52 16 12 N -0.68 -18.76 5.90 -495.58 -2.92 -21.68 16 13 C 0.13 4.31 5.60 85.56 0.48 4.79 16 14 C -0.20 -8.09 5.41 -19.67 -0.11 -8.19 16 15 C -0.08 -3.54 9.67 22.22 0.21 -3.33 16 16 C -0.24 -11.91 9.80 22.73 0.22 -11.69 16 17 C 0.08 4.30 5.58 -21.29 -0.12 4.18 16 18 C -0.50 -27.59 9.05 23.46 0.21 -27.37 16 19 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 20 C 0.03 1.73 5.14 85.26 0.44 2.17 16 21 N -0.83 -44.13 10.95 21.83 0.24 -43.89 16 22 Si 0.98 38.86 29.59 68.60 2.03 40.89 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 26 C -0.19 -10.26 8.70 22.73 0.20 -10.07 16 27 C -0.08 -3.94 9.67 22.22 0.21 -3.73 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 1.05 8.13 -2.39 -0.02 1.04 16 32 H 0.07 1.06 8.13 -2.38 -0.02 1.04 16 33 H 0.08 1.45 7.33 -2.38 -0.02 1.43 16 34 H 0.06 1.06 6.34 -2.39 -0.02 1.05 16 35 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 36 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 37 H 0.07 1.60 5.96 -2.38 -0.01 1.58 16 38 H 0.07 1.40 6.33 -2.39 -0.02 1.38 16 39 H 0.35 9.26 7.79 -89.70 -0.70 8.56 16 40 H 0.06 2.09 8.00 -2.39 -0.02 2.07 16 41 H 0.03 1.02 7.37 -2.38 -0.02 1.01 16 42 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 43 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 45 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 46 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -61.71 373.05 4.11 -57.60 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.27 Total: 34.86 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 4.71 Total: -45.69 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -2.68 Total: -65.57 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.22 Total: -22.09 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -61.71 4.11 -57.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338297928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.926 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds