Wall clock time and date at job start Tue Mar 31 2020 10:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47098 * 2 1 4 4 C 1.34225 * 117.00453 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00259 * 180.27586 * 4 3 2 7 7 H 1.09003 * 109.47159 * 299.72110 * 6 4 3 8 8 C 1.52994 * 109.47439 * 59.72427 * 6 4 3 9 9 C 1.53003 * 109.46870 * 179.72582 * 6 4 3 10 10 H 1.09000 * 109.47222 * 299.99349 * 9 6 4 11 11 C 1.52992 * 109.47476 * 59.99990 * 9 6 4 12 12 N 1.46906 * 109.46664 * 179.97438 * 9 6 4 13 13 C 1.46903 * 110.99736 * 154.99860 * 12 9 6 14 14 C 1.50705 * 109.46998 * 179.97438 * 13 12 9 15 15 C 1.38633 * 119.74781 * 269.72895 * 14 13 12 16 16 C 1.37617 * 120.24667 * 179.71923 * 15 14 13 17 17 C 1.40712 * 119.74353 * 0.57457 * 16 15 14 18 18 C 1.41395 * 120.24442 * 179.68017 * 17 16 15 19 19 H 1.08002 * 120.00402 * 24.40118 * 18 17 16 20 20 C 1.39948 * 120.00013 * 204.39976 * 18 17 16 21 21 N 1.30823 * 119.99930 * 17.86827 * 20 18 17 22 22 Si 1.86803 * 120.00061 * 197.86310 * 20 18 17 23 23 H 1.48506 * 109.46982 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46799 * 119.99900 * 22 20 18 25 25 H 1.48489 * 109.47551 * 240.00435 * 22 20 18 26 26 C 1.40708 * 119.51205 * 359.69844 * 17 16 15 27 27 C 1.37616 * 119.74743 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46922 * 60.00362 * 1 2 3 29 29 H 1.09005 * 109.46635 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47161 * 299.99880 * 1 2 3 31 31 H 1.09005 * 109.47463 * 239.99833 * 2 1 3 32 32 H 1.09001 * 109.46922 * 119.99638 * 2 1 3 33 33 H 1.08992 * 109.47441 * 180.02562 * 8 6 4 34 34 H 1.09008 * 109.46675 * 300.00249 * 8 6 4 35 35 H 1.09003 * 109.47205 * 59.99711 * 8 6 4 36 36 H 1.09000 * 109.47419 * 59.99479 * 11 9 6 37 37 H 1.09000 * 109.47570 * 179.97438 * 11 9 6 38 38 H 1.09001 * 109.46982 * 299.99914 * 11 9 6 39 39 H 1.00900 * 111.00098 * 278.94658 * 12 9 6 40 40 H 1.08993 * 109.47071 * 299.99672 * 13 12 9 41 41 H 1.09004 * 109.47117 * 60.00243 * 13 12 9 42 42 H 1.08002 * 119.87897 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.12700 * 180.27677 * 16 15 14 44 44 H 0.96996 * 119.99769 * 179.97438 * 21 20 18 45 45 H 1.08007 * 120.13159 * 179.97438 * 26 17 16 46 46 H 1.08006 * 119.87886 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0069 7 1 3.5884 3.4721 -0.8831 8 6 3.4438 3.6810 1.2561 9 6 5.4485 2.8574 0.0131 10 1 5.7807 2.3229 0.9030 11 6 5.9254 2.1140 -1.2362 12 7 6.0099 4.2150 0.0186 13 6 7.3573 4.2250 0.6039 14 6 7.8997 5.6310 0.5919 15 6 8.6267 6.0786 -0.5003 16 6 9.1218 7.3623 -0.5246 17 6 8.8980 8.2177 0.5701 18 6 9.4077 9.5365 0.5592 19 1 9.6115 10.0291 -0.3801 20 6 9.6479 10.2038 1.7657 21 7 9.7426 9.5258 2.8805 22 14 9.8337 12.0625 1.7842 23 1 9.6851 12.5885 0.4034 24 1 8.7872 12.6558 2.6547 25 1 11.1758 12.4207 2.3090 26 6 8.1636 7.7508 1.6757 27 6 7.6730 6.4650 1.6759 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8600 4.6883 1.2604 34 1 2.3552 3.7380 1.2516 35 1 3.7759 3.1464 2.1460 36 1 5.5932 2.6485 -2.1261 37 1 7.0139 2.0573 -1.2320 38 1 5.5088 1.1067 -1.2407 39 1 6.0166 4.6073 -0.9110 40 1 7.3101 3.8622 1.6306 41 1 8.0121 3.5784 0.0197 42 1 8.8016 5.4186 -1.3372 43 1 9.6841 7.7104 -1.3785 44 1 9.9095 9.9883 3.7167 45 1 7.9862 8.3987 2.5215 46 1 7.1087 6.1046 2.5233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338297938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:08 Heat of formation + Delta-G solvation = -85.719527 kcal Electronic energy + Delta-G solvation = -24368.916595 eV Core-core repulsion = 20836.505938 eV Total energy + Delta-G solvation = -3532.410657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82788 -38.12684 -37.32553 -36.27182 -34.02786 -32.86583 -31.82942 -30.37260 -29.26377 -28.74954 -26.06137 -24.97984 -23.66007 -23.00955 -21.80874 -20.92392 -20.24817 -19.72999 -17.80208 -17.28006 -16.89198 -16.49850 -15.36879 -15.16735 -14.74928 -14.58926 -14.23435 -13.97682 -13.62692 -13.45871 -13.38156 -13.04520 -12.96892 -12.70559 -12.47845 -12.18598 -12.08623 -11.91786 -11.85342 -11.67054 -11.50267 -11.41696 -11.15658 -11.03098 -10.99330 -10.75530 -10.72444 -10.43671 -10.39003 -10.16604 -9.58158 -9.35198 -9.12135 -8.05839 -7.42080 -7.29175 -6.75194 -4.33462 2.08930 2.45424 2.76170 3.07742 3.10277 3.13295 3.18925 3.93972 4.38393 4.52162 4.60111 4.65772 4.69661 4.80767 4.94147 5.05122 5.20167 5.38327 5.40807 5.43546 5.48406 5.62746 5.72446 5.75666 5.80371 5.89886 5.92794 6.01166 6.09127 6.18177 6.28146 6.34436 6.38848 6.45024 6.49323 6.97957 7.08782 7.31557 7.36362 7.38316 7.63019 7.64702 7.72111 7.91361 8.07928 8.17261 8.32277 8.66840 8.91434 8.99966 10.19337 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031274 B = 0.002333 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.110495 B =11999.791615 C =12473.023341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.468 3.532 5 O -0.507 6.507 6 C -0.071 4.071 7 H 0.106 0.894 8 C -0.134 4.134 9 C 0.098 3.902 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.676 5.676 13 C 0.127 3.873 14 C -0.212 4.212 15 C -0.085 4.085 16 C -0.228 4.228 17 C 0.112 3.888 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.792 5.792 22 Si 0.906 3.094 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.168 4.168 27 C -0.078 4.078 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.341 0.659 40 H 0.062 0.938 41 H 0.020 0.980 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.280 0.720 45 H 0.117 0.883 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -13.602 -3.606 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.311 3.689 5 O -0.395 6.395 6 C -0.090 4.090 7 H 0.124 0.876 8 C -0.192 4.192 9 C -0.013 4.013 10 H 0.100 0.900 11 C -0.254 4.254 12 N -0.306 5.306 13 C 0.000 4.000 14 C -0.214 4.214 15 C -0.104 4.104 16 C -0.247 4.247 17 C 0.109 3.891 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.418 5.418 22 Si 0.731 3.269 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.187 4.187 27 C -0.097 4.097 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.135 0.865 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.324 -13.712 -2.751 20.019 hybrid contribution 0.748 0.185 -0.676 1.026 sum -13.576 -13.527 -3.427 19.468 Atomic orbital electron populations 1.21803 0.92666 1.02879 1.03599 1.23005 0.95365 0.80531 1.02483 1.86526 1.24832 1.32056 1.83980 1.23977 0.80291 0.93006 0.71659 1.90600 1.60047 1.43517 1.45333 1.21054 0.96226 0.88837 1.02928 0.87556 1.21658 1.00661 1.02298 0.94549 1.21317 0.90950 0.90339 0.98690 0.89971 1.22734 1.01907 1.02797 0.97913 1.60622 1.24283 1.17957 1.27780 1.20559 0.86542 0.94881 0.98061 1.18878 1.09485 0.95404 0.97647 1.20359 0.98459 0.95486 0.96075 1.20923 1.08447 0.94298 1.01053 1.17630 0.88381 0.92280 0.90763 1.19625 1.38061 0.98374 0.93173 0.90498 1.25913 0.92570 1.00616 0.95099 1.69838 1.34525 1.37608 0.99813 0.86295 0.78467 0.82574 0.79582 1.18422 1.19696 1.20055 1.21317 1.01350 0.95381 1.00687 1.20493 0.98708 0.94358 0.96162 0.91467 0.90343 0.91404 0.91376 0.91314 0.88967 0.92300 0.92815 0.93015 0.92497 0.90194 0.84019 0.91948 0.96151 0.89952 0.89220 0.90959 0.86538 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.87 10.11 -39.24 -0.40 -4.27 16 4 C 0.47 5.67 6.97 36.01 0.25 5.92 16 5 O -0.51 -7.18 13.41 -18.75 -0.25 -7.43 16 6 C -0.07 -0.81 2.61 -91.77 -0.24 -1.05 16 7 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 8 C -0.13 -1.50 8.97 37.15 0.33 -1.17 16 9 C 0.10 1.27 1.81 -67.71 -0.12 1.14 16 10 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 11 C -0.19 -2.43 8.84 37.15 0.33 -2.11 16 12 N -0.68 -9.98 5.47 -107.99 -0.59 -10.57 16 13 C 0.13 2.18 5.60 -4.97 -0.03 2.15 16 14 C -0.21 -4.48 5.41 -104.33 -0.56 -5.04 16 15 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 16 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 17 C 0.11 2.98 5.57 -106.83 -0.60 2.38 16 18 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 21 N -0.79 -20.49 10.95 55.55 0.61 -19.89 16 22 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.17 -4.34 8.70 -38.88 -0.34 -4.68 16 27 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.09 1.15 7.60 -51.93 -0.39 0.76 16 34 H 0.06 0.58 8.11 -51.92 -0.42 0.16 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.06 0.73 7.45 -51.93 -0.39 0.35 16 38 H 0.08 1.06 5.52 -51.93 -0.29 0.77 16 39 H 0.34 5.02 8.46 -39.29 -0.33 4.69 16 40 H 0.06 1.06 7.99 -51.93 -0.42 0.65 16 41 H 0.02 0.34 7.37 -51.93 -0.38 -0.04 16 42 H 0.08 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 45 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 46 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -27.88 377.05 -9.47 -37.35 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.54 Total: 8.92 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -1.94 Total: -23.41 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: 0.02 Total: -30.45 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.65 Total: -11.70 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.88 -9.47 -37.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338297938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.374 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds