Wall clock time and date at job start Tue Mar 31 2020 10:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47098 * 2 1 4 4 C 1.34225 * 117.00453 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00259 * 180.27586 * 4 3 2 7 7 H 1.09003 * 109.47159 * 299.72110 * 6 4 3 8 8 C 1.52994 * 109.47439 * 59.72427 * 6 4 3 9 9 C 1.53003 * 109.46870 * 179.72582 * 6 4 3 10 10 H 1.09000 * 109.47222 * 299.99349 * 9 6 4 11 11 C 1.52992 * 109.47476 * 59.99990 * 9 6 4 12 12 N 1.46906 * 109.46664 * 179.97438 * 9 6 4 13 13 C 1.46903 * 110.99736 * 154.99860 * 12 9 6 14 14 C 1.50705 * 109.46998 * 179.97438 * 13 12 9 15 15 C 1.38633 * 119.74781 * 269.72895 * 14 13 12 16 16 C 1.37617 * 120.24667 * 179.71923 * 15 14 13 17 17 C 1.40712 * 119.74353 * 0.57457 * 16 15 14 18 18 C 1.41395 * 120.24442 * 179.68017 * 17 16 15 19 19 H 1.08002 * 120.00402 * 24.40118 * 18 17 16 20 20 C 1.39948 * 120.00013 * 204.39976 * 18 17 16 21 21 N 1.30823 * 119.99930 * 17.86827 * 20 18 17 22 22 Si 1.86803 * 120.00061 * 197.86310 * 20 18 17 23 23 H 1.48506 * 109.46982 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46799 * 119.99900 * 22 20 18 25 25 H 1.48489 * 109.47551 * 240.00435 * 22 20 18 26 26 C 1.40708 * 119.51205 * 359.69844 * 17 16 15 27 27 C 1.37616 * 119.74743 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46922 * 60.00362 * 1 2 3 29 29 H 1.09005 * 109.46635 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47161 * 299.99880 * 1 2 3 31 31 H 1.09005 * 109.47463 * 239.99833 * 2 1 3 32 32 H 1.09001 * 109.46922 * 119.99638 * 2 1 3 33 33 H 1.08992 * 109.47441 * 180.02562 * 8 6 4 34 34 H 1.09008 * 109.46675 * 300.00249 * 8 6 4 35 35 H 1.09003 * 109.47205 * 59.99711 * 8 6 4 36 36 H 1.09000 * 109.47419 * 59.99479 * 11 9 6 37 37 H 1.09000 * 109.47570 * 179.97438 * 11 9 6 38 38 H 1.09001 * 109.46982 * 299.99914 * 11 9 6 39 39 H 1.00900 * 111.00098 * 278.94658 * 12 9 6 40 40 H 1.08993 * 109.47071 * 299.99672 * 13 12 9 41 41 H 1.09004 * 109.47117 * 60.00243 * 13 12 9 42 42 H 1.08002 * 119.87897 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.12700 * 180.27677 * 16 15 14 44 44 H 0.96996 * 119.99769 * 179.97438 * 21 20 18 45 45 H 1.08007 * 120.13159 * 179.97438 * 26 17 16 46 46 H 1.08006 * 119.87886 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0069 7 1 3.5884 3.4721 -0.8831 8 6 3.4438 3.6810 1.2561 9 6 5.4485 2.8574 0.0131 10 1 5.7807 2.3229 0.9030 11 6 5.9254 2.1140 -1.2362 12 7 6.0099 4.2150 0.0186 13 6 7.3573 4.2250 0.6039 14 6 7.8997 5.6310 0.5919 15 6 8.6267 6.0786 -0.5003 16 6 9.1218 7.3623 -0.5246 17 6 8.8980 8.2177 0.5701 18 6 9.4077 9.5365 0.5592 19 1 9.6115 10.0291 -0.3801 20 6 9.6479 10.2038 1.7657 21 7 9.7426 9.5258 2.8805 22 14 9.8337 12.0625 1.7842 23 1 9.6851 12.5885 0.4034 24 1 8.7872 12.6558 2.6547 25 1 11.1758 12.4207 2.3090 26 6 8.1636 7.7508 1.6757 27 6 7.6730 6.4650 1.6759 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8600 4.6883 1.2604 34 1 2.3552 3.7380 1.2516 35 1 3.7759 3.1464 2.1460 36 1 5.5932 2.6485 -2.1261 37 1 7.0139 2.0573 -1.2320 38 1 5.5088 1.1067 -1.2407 39 1 6.0166 4.6073 -0.9110 40 1 7.3101 3.8622 1.6306 41 1 8.0121 3.5784 0.0197 42 1 8.8016 5.4186 -1.3372 43 1 9.6841 7.7104 -1.3785 44 1 9.9095 9.9883 3.7167 45 1 7.9862 8.3987 2.5215 46 1 7.1087 6.1046 2.5233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338297938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:07 Heat of formation + Delta-G solvation = -99.181635 kcal Electronic energy + Delta-G solvation = -24369.500356 eV Core-core repulsion = 20836.505938 eV Total energy + Delta-G solvation = -3532.994418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75659 -39.65749 -38.57198 -37.36176 -35.72754 -34.13635 -32.61911 -31.75492 -31.09079 -30.11824 -27.70514 -25.84777 -25.00368 -24.02830 -22.90516 -22.64602 -21.71985 -21.00179 -19.18777 -18.72242 -17.78516 -17.41817 -17.14062 -16.54957 -15.95667 -15.67724 -15.49957 -15.33212 -15.00977 -14.90428 -14.40112 -14.19383 -14.10431 -13.76310 -13.74493 -13.55335 -13.29030 -13.17816 -13.01870 -12.86341 -12.70325 -12.69479 -12.50450 -12.35282 -12.24517 -12.10382 -12.05593 -11.71167 -11.49224 -11.38512 -11.23656 -11.13169 -10.97396 -9.33437 -9.30011 -9.10679 -8.61418 -6.30101 0.97197 1.15314 1.19858 1.38986 1.49838 1.54192 1.66539 2.22301 2.72724 3.39391 3.58300 3.80229 3.84428 4.01263 4.04960 4.09968 4.26437 4.33355 4.35870 4.38056 4.45316 4.52282 4.62498 4.67973 4.77570 4.85049 4.89303 4.93262 4.93843 5.06562 5.10331 5.11408 5.14903 5.19539 5.25460 5.42127 5.44093 5.50775 5.55727 5.75568 5.97805 6.13152 6.16493 6.31405 6.43359 6.55858 6.74030 6.75507 6.98046 7.08515 8.35708 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031274 B = 0.002333 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.110495 B =11999.791615 C =12473.023341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.471 3.529 5 O -0.531 6.531 6 C -0.067 4.067 7 H 0.122 0.878 8 C -0.129 4.129 9 C 0.103 3.897 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.674 5.674 13 C 0.135 3.865 14 C -0.196 4.196 15 C -0.084 4.084 16 C -0.243 4.243 17 C 0.078 3.922 18 C -0.502 4.502 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.826 5.826 22 Si 0.981 3.019 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.266 1.266 26 C -0.192 4.192 27 C -0.083 4.083 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.345 0.655 40 H 0.065 0.935 41 H 0.032 0.968 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.287 0.713 45 H 0.097 0.903 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 -14.483 -4.288 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.421 6.421 6 C -0.087 4.087 7 H 0.139 0.861 8 C -0.186 4.186 9 C -0.007 4.007 10 H 0.089 0.911 11 C -0.247 4.247 12 N -0.305 5.305 13 C 0.007 3.993 14 C -0.197 4.197 15 C -0.103 4.103 16 C -0.263 4.263 17 C 0.076 3.924 18 C -0.532 4.532 19 H 0.091 0.909 20 C -0.181 4.181 21 N -0.453 5.453 22 Si 0.802 3.198 23 H -0.182 1.182 24 H -0.189 1.189 25 H -0.191 1.191 26 C -0.211 4.211 27 C -0.102 4.102 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.164 0.836 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.645 -14.610 -3.440 21.681 hybrid contribution 1.066 0.251 -0.495 1.202 sum -14.579 -14.359 -3.935 20.838 Atomic orbital electron populations 1.21823 0.90521 1.04308 1.03711 1.23282 0.97049 0.79346 1.02473 1.86519 1.23960 1.33574 1.83520 1.23986 0.80632 0.92796 0.71027 1.90596 1.60648 1.44249 1.46572 1.20999 0.95087 0.88893 1.03719 0.86059 1.21595 1.01503 1.01309 0.94203 1.21248 0.91904 0.89019 0.98541 0.91110 1.22656 1.01547 1.02474 0.98025 1.60497 1.22720 1.19293 1.28016 1.20426 0.87849 0.92173 0.98869 1.19273 1.07479 0.96796 0.96190 1.20683 0.97502 0.94885 0.97210 1.21135 1.09047 0.95343 1.00774 1.17973 0.89369 0.93151 0.91906 1.19848 1.40178 0.99335 0.93816 0.90913 1.26753 0.91692 1.05342 0.94277 1.69888 1.35267 1.39590 1.00517 0.85181 0.78796 0.76253 0.79589 1.18235 1.18867 1.19116 1.21274 1.02889 0.96572 1.00394 1.20722 0.98456 0.93643 0.97407 0.91247 0.88268 0.91351 0.91290 0.91507 0.90173 0.90920 0.93312 0.91807 0.92893 0.90834 0.83631 0.91679 0.94970 0.86785 0.88824 0.90245 0.88461 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.79 6.19 71.98 0.45 1.24 16 3 O -0.36 -7.16 10.11 -51.36 -0.52 -7.67 16 4 C 0.47 10.66 6.97 71.24 0.50 11.15 16 5 O -0.53 -14.38 13.41 21.95 0.29 -14.08 16 6 C -0.07 -1.41 2.61 -11.54 -0.03 -1.44 16 7 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 8 C -0.13 -2.66 8.97 71.98 0.65 -2.02 16 9 C 0.10 2.47 1.81 44.91 0.08 2.55 16 10 H 0.07 1.89 7.76 -2.39 -0.02 1.87 16 11 C -0.19 -4.30 8.84 71.98 0.64 -3.66 16 12 N -0.67 -18.40 5.47 -495.56 -2.71 -21.11 16 13 C 0.13 4.31 5.60 85.56 0.48 4.79 16 14 C -0.20 -7.98 5.41 -19.67 -0.11 -8.09 16 15 C -0.08 -3.57 9.67 22.22 0.21 -3.35 16 16 C -0.24 -11.98 9.80 22.73 0.22 -11.75 16 17 C 0.08 4.29 5.57 -21.29 -0.12 4.17 16 18 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 19 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 20 C 0.03 1.74 5.14 85.26 0.44 2.18 16 21 N -0.83 -44.00 10.95 21.83 0.24 -43.76 16 22 Si 0.98 38.83 29.60 68.60 2.03 40.86 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 26 C -0.19 -10.20 8.70 22.73 0.20 -10.01 16 27 C -0.08 -3.84 9.67 22.22 0.21 -3.62 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 32 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.08 1.88 7.60 -2.39 -0.02 1.86 16 34 H 0.07 1.29 8.11 -2.38 -0.02 1.27 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 37 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 38 H 0.07 1.82 5.52 -2.39 -0.01 1.81 16 39 H 0.34 9.21 8.46 -89.69 -0.76 8.45 16 40 H 0.06 2.08 7.99 -2.39 -0.02 2.06 16 41 H 0.03 0.97 7.37 -2.39 -0.02 0.96 16 42 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 45 H 0.10 5.46 6.16 -2.91 -0.02 5.44 16 46 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -61.19 377.05 4.30 -56.89 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.20 Total: 34.82 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 4.77 Total: -45.92 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -2.47 Total: -64.88 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.23 Total: -21.76 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -61.19 4.30 -56.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338297938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.296 kcal (2) G-P(sol) polarization free energy of solvation -61.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds