Wall clock time and date at job start Tue Mar 31 2020 10:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46810 * 2 1 4 4 C 1.34233 * 116.99645 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00329 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99859 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.46981 * 300.00516 * 6 4 3 8 8 C 1.53005 * 109.47058 * 60.00201 * 6 4 3 9 9 C 1.52996 * 109.47201 * 180.02562 * 6 4 3 10 10 H 1.09000 * 109.47300 * 59.99447 * 9 6 4 11 11 C 1.53005 * 109.47066 * 300.00140 * 9 6 4 12 12 N 1.46896 * 109.47313 * 179.97438 * 9 6 4 13 13 C 1.46904 * 111.00460 * 204.99842 * 12 9 6 14 14 C 1.50700 * 109.47217 * 179.97438 * 13 12 9 15 15 C 1.38630 * 119.74498 * 90.00170 * 14 13 12 16 16 C 1.37623 * 120.24117 * 180.22751 * 15 14 13 17 17 C 1.40707 * 119.74849 * 359.52215 * 16 15 14 18 18 C 1.41400 * 120.24843 * 180.22492 * 17 16 15 19 19 H 1.07994 * 120.00480 * 204.52708 * 18 17 16 20 20 C 1.39950 * 119.99509 * 24.53120 * 18 17 16 21 21 N 1.30821 * 119.99991 * 17.72383 * 20 18 17 22 22 Si 1.86800 * 119.99756 * 197.72017 * 20 18 17 23 23 H 1.48499 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46931 * 119.99981 * 22 20 18 25 25 H 1.48490 * 109.47155 * 239.99623 * 22 20 18 26 26 C 1.40715 * 119.51064 * 0.47652 * 17 16 15 27 27 C 1.37618 * 119.74364 * 359.74989 * 26 17 16 28 28 H 1.09000 * 109.47157 * 299.99661 * 1 2 3 29 29 H 1.09003 * 109.47130 * 59.99845 * 1 2 3 30 30 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46981 * 240.00861 * 2 1 3 32 32 H 1.08990 * 109.47458 * 120.00697 * 2 1 3 33 33 H 1.09003 * 109.46734 * 299.99819 * 8 6 4 34 34 H 1.08994 * 109.46754 * 59.99974 * 8 6 4 35 35 H 1.09001 * 109.46717 * 180.02562 * 8 6 4 36 36 H 1.09000 * 109.46495 * 299.99800 * 11 9 6 37 37 H 1.08996 * 109.47270 * 59.99684 * 11 9 6 38 38 H 1.09000 * 109.47094 * 180.02562 * 11 9 6 39 39 H 1.00899 * 110.99801 * 328.95336 * 12 9 6 40 40 H 1.09000 * 109.46900 * 59.99753 * 13 12 9 41 41 H 1.09003 * 109.46609 * 300.00110 * 13 12 9 42 42 H 1.08001 * 119.88189 * 359.95744 * 15 14 13 43 43 H 1.08002 * 120.12205 * 179.72192 * 16 15 14 44 44 H 0.97005 * 119.99803 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.12804 * 179.73261 * 26 17 16 46 46 H 1.08002 * 119.87235 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5850 3.4699 -0.8888 8 6 3.4487 3.6841 1.2505 9 6 5.4486 2.8575 0.0010 10 1 5.7845 2.3257 -0.8891 11 6 5.9202 2.1099 1.2499 12 7 6.0100 4.2149 0.0010 13 6 7.3598 4.2264 -0.5786 14 6 7.9016 5.6325 -0.5622 15 6 8.6191 6.0804 0.5362 16 6 9.1145 7.3640 0.5640 17 6 8.8991 8.2195 -0.5322 18 6 9.4074 9.5388 -0.5168 19 1 8.9427 10.3037 -1.1212 20 6 10.5129 9.8534 0.2817 21 7 11.2847 8.8995 0.7354 22 14 10.8864 11.6354 0.6994 23 1 9.8696 12.5152 0.0691 24 1 10.8515 11.8161 2.1730 25 1 12.2346 11.9913 0.1890 26 6 8.1693 7.7540 -1.6417 27 6 7.6792 6.4681 -1.6458 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.3602 3.7411 1.2501 34 1 3.7844 3.1516 2.1403 35 1 3.8650 4.6915 1.2507 36 1 5.5843 2.6417 2.1401 37 1 5.5036 1.1027 1.2495 38 1 7.0087 2.0533 1.2501 39 1 5.4024 4.8575 -0.4847 40 1 7.3169 3.8659 -1.6064 41 1 8.0121 3.5784 0.0068 42 1 8.7861 5.4210 1.3751 43 1 9.6694 7.7124 1.4227 44 1 12.0507 9.1176 1.2891 45 1 7.9944 8.4036 -2.4866 46 1 7.1193 6.1086 -2.4964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338297947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:13 Heat of formation + Delta-G solvation = -82.656196 kcal Electronic energy + Delta-G solvation = -24368.894290 eV Core-core repulsion = 20836.616469 eV Total energy + Delta-G solvation = -3532.277821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90212 -38.16316 -37.37205 -36.32558 -34.07779 -32.83866 -31.89176 -30.06002 -29.26143 -28.59331 -26.23135 -25.53736 -23.86538 -23.03925 -21.64140 -20.93664 -19.87866 -19.54657 -17.80500 -17.27748 -16.88975 -16.49065 -15.58765 -15.39019 -15.20797 -14.49949 -14.15688 -14.02930 -13.76026 -13.51751 -13.32020 -13.03381 -12.74462 -12.55525 -12.47409 -12.28036 -12.02884 -11.93517 -11.91406 -11.80233 -11.53581 -11.44625 -11.11092 -10.98522 -10.87873 -10.73805 -10.68252 -10.43425 -10.38015 -10.16670 -9.56417 -9.34914 -9.12271 -8.08212 -7.41721 -7.29009 -6.74794 -4.33303 2.03570 2.40293 2.76016 3.07907 3.10392 3.13453 3.18955 3.94185 4.33684 4.46242 4.57442 4.61677 4.67414 4.72028 4.91708 4.93902 5.06060 5.34180 5.41030 5.49650 5.56064 5.60504 5.70775 5.74927 5.84698 5.86548 5.93570 6.05154 6.10986 6.12724 6.28290 6.35336 6.38583 6.47644 6.58040 6.98330 7.09006 7.31719 7.36918 7.38819 7.60305 7.63490 7.71013 7.91163 8.08186 8.17729 8.32444 8.67129 8.91636 9.00200 10.19731 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.036269 B = 0.002260 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.822994 B =12383.891249 C =12522.136965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.502 6.502 6 C -0.084 4.084 7 H 0.105 0.895 8 C -0.139 4.139 9 C 0.098 3.902 10 H 0.046 0.954 11 C -0.151 4.151 12 N -0.674 5.674 13 C 0.126 3.874 14 C -0.212 4.212 15 C -0.078 4.078 16 C -0.168 4.168 17 C 0.112 3.888 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.792 5.792 22 Si 0.906 3.094 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.228 4.228 27 C -0.086 4.086 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.338 0.662 40 H 0.019 0.981 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.280 0.720 45 H 0.090 0.910 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 -12.973 0.549 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.312 3.688 5 O -0.389 6.389 6 C -0.104 4.104 7 H 0.123 0.877 8 C -0.197 4.197 9 C -0.012 4.012 10 H 0.064 0.936 11 C -0.209 4.209 12 N -0.307 5.307 13 C -0.002 4.002 14 C -0.214 4.214 15 C -0.097 4.097 16 C -0.187 4.187 17 C 0.109 3.891 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.418 5.418 22 Si 0.731 3.269 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.247 4.247 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.523 -13.385 1.327 20.540 hybrid contribution 0.166 0.472 -0.838 0.976 sum -15.357 -12.913 0.489 20.070 Atomic orbital electron populations 1.21805 0.92628 1.02924 1.03587 1.23016 0.95376 0.80415 1.02557 1.86520 1.24728 1.32184 1.84019 1.23775 0.80354 0.92769 0.71934 1.90617 1.60023 1.43340 1.44965 1.21267 0.96542 0.89794 1.02789 0.87698 1.21764 1.00952 1.01742 0.95205 1.21321 0.89550 0.91408 0.98905 0.93604 1.22065 1.01582 1.00173 0.97077 1.60782 1.04173 1.05457 1.60249 1.20602 0.88515 0.95702 0.95369 1.18874 1.09622 0.95042 0.97828 1.20499 0.97414 0.95795 0.95952 1.21318 1.04239 0.93740 0.99408 1.17632 0.88835 0.92837 0.89750 1.19625 1.11327 0.95499 1.22784 0.90491 1.25915 0.95075 0.99350 0.93871 1.69839 1.11580 1.34309 1.26057 0.86293 0.78884 0.82664 0.79063 1.18420 1.19704 1.20051 1.20924 1.09300 0.95646 0.98852 1.20353 0.99478 0.94364 0.96252 0.91410 0.91465 0.90296 0.91323 0.91251 0.92024 0.91762 0.89538 0.92161 0.90988 0.92669 0.84287 0.96327 0.91782 0.89470 0.86550 0.90956 0.89206 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.76 10.12 -39.26 -0.40 -4.15 16 4 C 0.47 5.58 6.96 36.01 0.25 5.83 16 5 O -0.50 -7.09 13.41 -18.75 -0.25 -7.34 16 6 C -0.08 -0.93 2.52 -91.77 -0.23 -1.16 16 7 H 0.11 1.01 8.12 -51.93 -0.42 0.59 16 8 C -0.14 -1.42 8.61 37.16 0.32 -1.10 16 9 C 0.10 1.30 2.08 -67.71 -0.14 1.16 16 10 H 0.05 0.65 7.76 -51.93 -0.40 0.25 16 11 C -0.15 -2.05 8.74 37.16 0.32 -1.73 16 12 N -0.67 -10.14 5.58 -107.99 -0.60 -10.74 16 13 C 0.13 2.19 5.60 -4.97 -0.03 2.17 16 14 C -0.21 -4.52 5.41 -104.33 -0.56 -5.08 16 15 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 16 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 17 C 0.11 2.99 5.57 -106.83 -0.60 2.39 16 18 C -0.46 -12.31 9.06 -37.74 -0.34 -12.65 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.08 1.90 5.14 -17.34 -0.09 1.82 16 21 N -0.79 -20.58 10.95 55.55 0.61 -19.97 16 22 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 27 C -0.09 -1.88 9.67 -39.66 -0.38 -2.26 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 35 H 0.09 0.94 7.49 -51.93 -0.39 0.56 16 36 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 37 H 0.07 0.99 5.52 -51.93 -0.29 0.71 16 38 H 0.05 0.78 7.45 -51.93 -0.39 0.39 16 39 H 0.34 4.88 8.18 -39.29 -0.32 4.56 16 40 H 0.02 0.31 7.99 -51.93 -0.42 -0.10 16 41 H 0.06 1.13 7.38 -51.93 -0.38 0.74 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 44 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 45 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 46 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -28.37 373.08 -9.37 -37.74 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.35 Total: 8.40 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -1.97 Total: -23.21 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.01 Total: -30.72 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.65 Total: -11.50 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.37 -9.37 -37.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338297947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.918 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds