Wall clock time and date at job start Tue Mar 31 2020 09:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47028 * 2 1 4 4 C 1.35906 * 117.00260 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.14162 * 359.97431 * 4 3 2 6 6 C 1.37912 * 119.80899 * 180.09460 * 5 4 3 7 7 C 1.38786 * 120.45377 * 0.02918 * 6 5 4 8 8 C 1.37879 * 119.81455 * 359.84696 * 7 6 5 9 9 C 1.38523 * 120.14742 * 179.97438 * 4 3 2 10 10 C 1.50725 * 121.65442 * 180.24037 * 8 7 6 11 11 C 1.52889 * 109.97091 * 343.08760 * 10 8 7 12 12 N 1.47157 * 108.50318 * 50.38352 * 11 10 8 13 13 C 1.46894 * 111.00226 * 52.12377 * 12 11 10 14 14 C 1.52997 * 109.47209 * 70.57401 * 13 12 11 15 15 O 1.42899 * 109.47326 * 65.11204 * 14 13 12 16 16 C 1.42896 * 113.99738 * 180.02562 * 15 14 13 17 17 C 1.50709 * 109.46976 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99612 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99903 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00372 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00058 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46727 * 59.99892 * 21 19 17 23 23 H 1.48491 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46726 * 300.00276 * 21 19 17 25 25 C 1.46634 * 110.23884 * 288.70836 * 12 11 10 26 26 H 1.09005 * 109.46845 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47004 * 300.00067 * 1 2 3 28 28 H 1.08996 * 109.47175 * 60.00721 * 1 2 3 29 29 H 1.08995 * 109.47420 * 239.99707 * 2 1 3 30 30 H 1.09001 * 109.46927 * 119.99679 * 2 1 3 31 31 H 1.08003 * 120.09880 * 0.06715 * 5 4 3 32 32 H 1.07995 * 119.76977 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.84240 * 359.95409 * 9 4 3 34 34 H 1.08999 * 109.39016 * 222.92678 * 10 8 7 35 35 H 1.09005 * 109.38849 * 103.23966 * 10 8 7 36 36 H 1.08997 * 109.62995 * 290.67346 * 11 10 8 37 37 H 1.09002 * 109.63098 * 170.08832 * 11 10 8 38 38 H 1.09003 * 109.47138 * 310.57008 * 13 12 11 39 39 H 1.09005 * 109.47156 * 190.57511 * 13 12 11 40 40 H 1.09003 * 109.46840 * 305.10788 * 14 13 12 41 41 H 1.09005 * 109.46740 * 185.11393 * 14 13 12 42 42 H 1.08996 * 109.47711 * 299.99476 * 16 15 14 43 43 H 1.08997 * 109.47278 * 60.00166 * 16 15 14 44 44 H 0.96998 * 120.00212 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.29957 * 172.90788 * 25 12 11 46 46 H 1.09002 * 109.30261 * 292.28590 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.2017 0.4271 -0.0005 6 6 5.5679 0.6159 0.0009 7 6 6.1010 1.8972 0.0029 8 6 5.2598 2.9897 0.0003 9 6 3.8863 2.8041 -0.0011 10 6 5.7938 4.3992 -0.0030 11 6 7.2644 4.4014 0.4150 12 7 7.9817 3.4040 -0.3950 13 6 7.7323 3.6114 -1.8277 14 6 8.4404 4.8866 -2.2893 15 8 9.8544 4.7143 -2.1751 16 6 10.6135 5.8542 -2.5828 17 6 12.0833 5.5630 -2.4208 18 1 12.4053 4.6032 -2.0446 19 6 13.0168 6.5214 -2.7539 20 7 12.6246 7.6899 -3.2125 21 14 14.8386 6.1602 -2.5538 22 1 15.2071 4.9930 -3.3947 23 1 15.6275 7.3448 -2.9773 24 1 15.1293 5.8558 -1.1296 25 6 7.5997 2.0487 0.0141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7932 -0.5726 -0.0012 32 1 6.2273 -0.2394 0.0005 33 1 3.2282 3.6605 -0.0019 34 1 5.2179 5.0060 0.6958 35 1 5.7018 4.8186 -1.0049 36 1 7.3454 4.1427 1.4708 37 1 7.6924 5.3890 0.2433 38 1 6.6603 3.7085 -1.9995 39 1 8.1146 2.7595 -2.3901 40 1 8.1248 5.7233 -1.6660 41 1 8.1818 5.0899 -3.3285 42 1 10.4003 6.0780 -3.6280 43 1 10.3430 6.7107 -1.9653 44 1 13.2814 8.3641 -3.4471 45 1 8.0398 1.3272 -0.6741 46 1 7.9738 1.8570 1.0199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339041742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:30 Heat of formation + Delta-G solvation = -80.014403 kcal Electronic energy + Delta-G solvation = -24584.929088 eV Core-core repulsion = 21052.765823 eV Total energy + Delta-G solvation = -3532.163265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.70735 -40.23685 -38.52878 -37.24609 -34.89033 -33.80471 -32.90651 -31.76894 -30.44991 -29.81564 -28.75028 -25.35354 -25.13378 -24.47892 -24.09828 -23.13774 -22.32966 -20.21007 -18.76808 -18.53591 -17.63323 -17.41983 -17.06687 -16.96953 -16.64866 -16.37776 -15.86681 -15.68023 -15.51211 -15.07654 -14.77968 -14.43411 -14.16478 -14.14105 -13.78444 -13.54698 -13.51695 -13.29212 -13.06745 -12.99835 -12.88823 -12.70567 -12.51281 -12.42753 -12.28170 -12.20201 -11.99972 -11.79436 -11.48760 -11.45176 -11.21770 -10.82215 -10.14766 -9.78785 -9.18268 -9.02630 -8.28759 -6.40609 0.30346 0.39762 1.41366 1.46627 1.54871 2.22188 2.37471 2.68493 2.99954 3.04655 3.26715 3.68621 3.80199 3.90345 4.01505 4.03728 4.07879 4.11367 4.18966 4.27454 4.33167 4.35798 4.36803 4.47355 4.59599 4.60521 4.70325 4.72166 4.80492 4.88345 4.91394 4.92060 4.94197 5.01439 5.03568 5.12109 5.19079 5.22663 5.28266 5.37796 5.58347 5.59084 5.80089 6.00659 6.11896 6.19566 6.44773 6.60248 6.89618 7.31432 8.83327 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.040543 B = 0.002295 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.456553 B =12199.493567 C =12452.691748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.117 3.883 5 C -0.210 4.210 6 C -0.074 4.074 7 C -0.157 4.157 8 C -0.044 4.044 9 C -0.166 4.166 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.536 5.536 13 C 0.067 3.933 14 C 0.060 3.940 15 O -0.393 6.393 16 C 0.209 3.791 17 C -0.545 4.545 18 H 0.061 0.939 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.983 3.017 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.266 1.266 25 C 0.099 3.901 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.043 0.957 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.270 0.730 45 H 0.088 0.912 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.556 -16.308 8.330 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.072 3.928 5 C -0.228 4.228 6 C -0.092 4.092 7 C -0.159 4.159 8 C -0.044 4.044 9 C -0.185 4.185 10 C -0.153 4.153 11 C -0.075 4.075 12 N -0.257 5.257 13 C -0.061 4.061 14 C -0.017 4.017 15 O -0.313 6.313 16 C 0.134 3.866 17 C -0.582 4.582 18 H 0.079 0.921 19 C -0.194 4.194 20 N -0.571 5.571 21 Si 0.806 3.194 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.191 1.191 25 C -0.028 4.028 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.040 -16.105 8.411 29.342 hybrid contribution -0.214 0.313 -0.385 0.541 sum -23.255 -15.792 8.026 29.233 Atomic orbital electron populations 1.21810 0.91561 1.04192 1.03110 1.23054 0.96848 0.80750 1.02250 1.86049 1.18804 1.31373 1.88715 1.19034 0.82719 0.94355 0.96699 1.21412 0.94118 0.98684 1.08606 1.21136 0.94786 0.96808 0.96517 1.20468 0.97355 0.93395 1.04712 1.19428 0.92102 0.95320 0.97592 1.20434 0.94520 0.95513 1.08014 1.21113 0.97690 0.93115 1.03425 1.22223 0.90542 0.96533 0.98227 1.62470 1.56414 1.03299 1.03529 1.22104 0.97868 0.97220 0.88895 1.22537 0.82709 0.97922 0.98549 1.87895 1.16515 1.39681 1.87200 1.19783 0.90934 0.83962 0.91927 1.21357 0.91144 1.01211 1.44535 0.92097 1.25972 1.05023 0.94274 0.94098 1.70068 1.36520 1.06108 1.44402 0.85234 0.76987 0.78000 0.79173 1.19007 1.19997 1.19061 1.21107 0.88877 0.90332 1.02532 0.88114 0.91890 0.92010 0.91233 0.91054 0.83402 0.83618 0.85094 0.88431 0.90076 0.89696 0.91055 0.91427 0.90724 0.94214 0.93899 0.99980 0.99976 0.92127 0.89409 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 71.98 0.74 -0.56 16 2 C 0.05 0.55 5.46 71.98 0.39 0.94 16 3 O -0.33 -6.64 10.14 -92.49 -0.94 -7.58 16 4 C 0.12 2.48 6.68 22.46 0.15 2.63 16 5 C -0.21 -3.79 9.04 22.32 0.20 -3.59 16 6 C -0.07 -1.40 9.64 22.32 0.22 -1.18 16 7 C -0.16 -3.52 5.41 -19.84 -0.11 -3.63 16 8 C -0.04 -1.01 5.15 -19.86 -0.10 -1.11 16 9 C -0.17 -3.71 9.59 22.42 0.22 -3.50 16 10 C -0.12 -2.54 5.15 29.82 0.15 -2.39 16 11 C 0.05 1.38 5.70 86.22 0.49 1.87 16 12 N -0.54 -16.11 4.94 -901.17 -4.45 -20.56 16 13 C 0.07 2.08 4.72 86.30 0.41 2.48 16 14 C 0.06 2.33 6.07 71.98 0.44 2.77 16 15 O -0.39 -19.99 10.27 -148.98 -1.53 -21.52 16 16 C 0.21 12.16 5.69 71.24 0.41 12.57 16 17 C -0.54 -33.39 9.43 25.60 0.24 -33.15 16 18 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 19 C 0.00 0.27 5.46 84.65 0.46 0.73 16 20 N -0.93 -57.10 13.29 21.44 0.28 -56.82 16 21 Si 0.98 45.30 29.54 68.60 2.03 47.33 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 C 0.10 2.40 5.54 85.59 0.47 2.88 16 26 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 30 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 31 H 0.15 1.89 6.32 -2.91 -0.02 1.87 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.83 6.62 -2.38 -0.02 1.81 16 36 H 0.08 2.05 8.05 -2.39 -0.02 2.03 16 37 H 0.07 2.08 6.88 -2.39 -0.02 2.07 16 38 H 0.07 1.84 5.22 -2.39 -0.01 1.82 16 39 H 0.07 2.36 7.84 -2.38 -0.02 2.34 16 40 H 0.04 1.50 6.68 -2.39 -0.02 1.48 16 41 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 42 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.09 2.04 7.85 -2.39 -0.02 2.02 16 46 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -71.36 366.70 1.12 -70.23 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.95 Total: 11.14 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.78 Total: -22.24 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -4.17 Total: -77.38 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -2.47 Total: -29.09 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.36 1.12 -70.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339041742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.780 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds