Wall clock time and date at job start Tue Mar 31 2020 10:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45209 * 109.46538 * 2 1 4 4 C 1.34230 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99545 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00009 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47229 * 205.00133 * 6 4 3 8 8 C 1.53002 * 109.46891 * 85.00400 * 6 4 3 9 9 N 1.46898 * 109.46903 * 325.00204 * 6 4 3 10 10 C 1.46904 * 111.00162 * 303.95185 * 9 6 4 11 11 C 1.46906 * 110.99804 * 180.02562 * 9 6 4 12 12 C 1.50696 * 109.47133 * 189.99981 * 11 9 6 13 13 C 1.38636 * 119.74961 * 269.72845 * 12 11 9 14 14 C 1.37611 * 120.24980 * 179.72516 * 13 12 11 15 15 C 1.40717 * 119.74202 * 0.56439 * 14 13 12 16 16 C 1.41400 * 120.24539 * 179.68368 * 15 14 13 17 17 H 1.07994 * 120.00090 * 204.40900 * 16 15 14 18 18 C 1.39952 * 119.99631 * 24.40900 * 16 15 14 19 19 N 1.30819 * 120.00273 * 17.84643 * 18 16 15 20 20 Si 1.86792 * 119.99748 * 197.84555 * 18 16 15 21 21 H 1.48500 * 109.47078 * 89.99962 * 20 18 16 22 22 H 1.48499 * 109.47193 * 210.00078 * 20 18 16 23 23 H 1.48504 * 109.47370 * 330.00016 * 20 18 16 24 24 C 1.40719 * 119.51414 * 359.70514 * 15 14 13 25 25 C 1.37614 * 119.74045 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47082 * 299.99422 * 1 2 3 27 27 H 1.08991 * 109.47370 * 60.00464 * 1 2 3 28 28 H 1.08999 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47060 * 240.00049 * 2 1 3 30 30 H 1.09002 * 109.46947 * 119.99331 * 2 1 3 31 31 H 1.08996 * 109.47139 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47066 * 299.99979 * 7 6 4 33 33 H 1.09004 * 109.47091 * 59.99566 * 7 6 4 34 34 H 1.09007 * 109.46861 * 299.99984 * 8 6 4 35 35 H 1.08995 * 109.47223 * 59.99728 * 8 6 4 36 36 H 1.08998 * 109.47140 * 180.02562 * 8 6 4 37 37 H 1.09001 * 109.47007 * 59.99732 * 10 9 6 38 38 H 1.08998 * 109.46840 * 180.02562 * 10 9 6 39 39 H 1.09005 * 109.46669 * 300.00531 * 10 9 6 40 40 H 1.08999 * 109.46838 * 310.00184 * 11 9 6 41 41 H 1.09004 * 109.46930 * 69.99707 * 11 9 6 42 42 H 1.08002 * 119.87050 * 359.97438 * 13 12 11 43 43 H 1.07997 * 120.13132 * 180.27502 * 14 13 12 44 44 H 0.96991 * 120.00408 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.12971 * 179.97438 * 24 15 14 46 46 H 1.08011 * 119.87321 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 -0.0012 7 6 5.3234 2.9091 -0.6113 8 6 3.9999 3.4573 1.4357 9 7 3.0590 3.8234 -0.7955 10 6 2.8835 3.3038 -2.1583 11 6 3.5909 5.1926 -0.8190 12 6 2.5686 6.1182 -1.4267 13 6 2.5728 6.3449 -2.7944 14 6 1.6405 7.1837 -3.3609 15 6 0.6881 7.8216 -2.5448 16 6 -0.2705 8.6909 -3.1148 17 1 -0.7259 9.4625 -2.5119 18 6 -0.6290 8.5512 -4.4604 19 7 -0.3651 7.4385 -5.0956 20 14 -1.4846 9.9538 -5.3493 21 1 -0.4675 10.8402 -5.9697 22 1 -2.3713 9.4028 -6.4054 23 1 -2.2951 10.7334 -4.3795 24 6 0.6969 7.5885 -1.1571 25 6 1.6350 6.7414 -0.6131 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 5.7401 3.9163 -0.6113 32 1 5.9627 2.2518 -0.0219 33 1 5.2669 2.5388 -1.6349 34 1 3.0005 3.4776 1.8704 35 1 4.6391 2.8000 2.0251 36 1 4.4160 4.4647 1.4353 37 1 2.4238 2.3165 -2.1143 38 1 2.2420 3.9789 -2.7247 39 1 3.8551 3.2307 -2.6471 40 1 3.8124 5.5139 0.1987 41 1 4.5034 5.2177 -1.4147 42 1 3.3079 5.8581 -3.4181 43 1 1.6427 7.3554 -4.4272 44 1 -0.6133 7.3418 -6.0283 45 1 -0.0292 8.0733 -0.5213 46 1 1.6440 6.5612 0.4519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339791267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:31 Heat of formation + Delta-G solvation = -65.514910 kcal Electronic energy + Delta-G solvation = -25633.421366 eV Core-core repulsion = 22101.886847 eV Total energy + Delta-G solvation = -3531.534519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.83459 -38.52100 -37.16708 -36.44980 -33.85174 -32.12092 -31.61683 -30.06928 -29.30200 -27.77143 -27.01511 -24.93004 -24.78755 -22.99850 -21.99503 -20.90343 -19.99243 -19.14363 -17.61009 -17.27502 -16.70210 -16.34015 -15.32914 -15.23441 -14.66016 -14.42721 -14.12216 -13.95304 -13.68586 -13.47174 -13.37852 -12.88230 -12.67584 -12.52067 -12.31394 -12.02541 -11.99681 -11.92991 -11.89985 -11.61094 -11.50588 -11.34652 -11.20472 -11.15789 -10.94934 -10.90825 -10.56121 -10.49126 -10.31398 -10.15227 -9.55553 -9.36335 -9.12734 -8.01767 -7.41355 -7.27384 -6.75458 -4.33824 2.20230 2.68925 2.75029 3.06822 3.10539 3.10711 3.17696 3.93270 4.09222 4.55724 4.66925 4.84150 4.88957 4.91887 4.95253 5.17884 5.39109 5.45987 5.55014 5.56559 5.69632 5.72995 5.73317 5.76170 5.79602 5.84469 5.95155 5.99368 6.02219 6.17892 6.29166 6.39171 6.42191 6.45369 6.49989 6.95881 7.08487 7.20335 7.29312 7.36643 7.40461 7.63566 7.84404 7.90626 8.07060 8.15425 8.32175 8.65546 8.91117 8.99432 10.18790 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.003410 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.665785 B = 8209.616529 C = 8842.717652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.332 6.332 4 C 0.482 3.518 5 O -0.519 6.519 6 C 0.114 3.886 7 C -0.172 4.172 8 C -0.140 4.140 9 N -0.510 5.510 10 C 0.017 3.983 11 C 0.115 3.885 12 C -0.208 4.208 13 C -0.094 4.094 14 C -0.166 4.166 15 C 0.113 3.887 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.792 5.792 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.228 4.228 25 C -0.067 4.067 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.022 0.978 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.280 0.720 45 H 0.090 0.910 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.569 -9.876 7.132 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.247 6.247 4 C 0.325 3.675 5 O -0.407 6.407 6 C 0.022 3.978 7 C -0.231 4.231 8 C -0.197 4.197 9 N -0.235 5.235 10 C -0.131 4.131 11 C -0.011 4.011 12 C -0.209 4.209 13 C -0.113 4.113 14 C -0.186 4.186 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.418 5.418 20 Si 0.731 3.269 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.248 4.248 25 C -0.086 4.086 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.040 0.960 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.243 -10.314 7.134 13.593 hybrid contribution 0.307 0.220 -0.988 1.058 sum 5.551 -10.094 6.146 13.057 Atomic orbital electron populations 1.21782 0.92494 1.02557 1.04046 1.23022 0.95686 0.80928 1.02017 1.86717 1.23942 1.31122 1.82917 1.23612 0.80794 0.91887 0.71196 1.90630 1.60850 1.42855 1.46354 1.20980 0.91655 0.87451 0.97682 1.22371 0.95606 1.03249 1.01897 1.21906 1.03563 1.02027 0.92245 1.62467 1.45938 1.01709 1.13411 1.22547 1.00165 1.00893 0.89486 1.20911 0.94672 0.85745 0.99739 1.18776 1.02860 1.05796 0.93517 1.20510 0.98339 0.98976 0.93430 1.21267 0.95834 1.01535 0.99933 1.17619 0.90524 0.89903 0.90912 1.19617 1.20350 1.14513 0.94800 0.90500 1.25894 0.94750 0.95730 0.97727 1.69825 1.36998 1.23523 1.11425 0.86341 0.79551 0.81681 0.79317 1.19322 1.20362 1.18629 1.20962 1.02446 1.05759 0.95604 1.20311 0.94837 0.96537 0.96867 0.91372 0.91102 0.90597 0.91612 0.91659 0.90610 0.91056 0.91848 0.90626 0.91879 0.90238 0.92415 0.88927 0.95966 0.91019 0.95269 0.89957 0.86620 0.90943 0.89169 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.33 -4.93 8.96 -39.26 -0.35 -5.28 16 4 C 0.48 7.28 5.50 36.01 0.20 7.48 16 5 O -0.52 -8.51 15.84 -18.75 -0.30 -8.80 16 6 C 0.11 1.59 0.67 -132.75 -0.09 1.50 16 7 C -0.17 -2.17 7.32 37.16 0.27 -1.90 16 8 C -0.14 -1.66 8.25 37.16 0.31 -1.35 16 9 N -0.51 -8.24 4.36 -229.93 -1.00 -9.24 16 10 C 0.02 0.28 8.53 60.07 0.51 0.79 16 11 C 0.11 1.91 4.21 -4.97 -0.02 1.89 16 12 C -0.21 -4.30 4.91 -104.33 -0.51 -4.81 16 13 C -0.09 -2.09 7.87 -39.66 -0.31 -2.40 16 14 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 15 C 0.11 2.96 5.58 -106.82 -0.60 2.37 16 16 C -0.46 -12.19 9.05 -37.74 -0.34 -12.53 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 19 N -0.79 -20.29 10.95 55.55 0.61 -19.68 16 20 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 24 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 25 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.08 0.88 6.64 -51.93 -0.34 0.53 16 32 H 0.07 0.85 7.87 -51.92 -0.41 0.44 16 33 H 0.06 0.84 6.49 -51.93 -0.34 0.50 16 34 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.87 6.20 -51.93 -0.32 0.55 16 37 H 0.06 0.93 6.31 -51.93 -0.33 0.60 16 38 H 0.09 1.76 5.90 -51.93 -0.31 1.45 16 39 H 0.02 0.34 6.40 -51.93 -0.33 0.01 16 40 H 0.07 1.08 5.77 -51.93 -0.30 0.78 16 41 H 0.03 0.46 6.80 -51.93 -0.35 0.11 16 42 H 0.08 1.68 7.99 -52.49 -0.42 1.26 16 43 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 45 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 46 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -28.19 364.53 -8.87 -37.06 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.13 Total: 6.57 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -1.16 Total: -19.62 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: -0.39 Total: -28.92 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.65 Total: -14.09 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.19 -8.87 -37.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339791267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.453 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds