Wall clock time and date at job start Tue Mar 31 2020 10:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45209 * 109.46538 * 2 1 4 4 C 1.34230 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99545 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00009 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47229 * 205.00133 * 6 4 3 8 8 C 1.53002 * 109.46891 * 85.00400 * 6 4 3 9 9 N 1.46898 * 109.46903 * 325.00204 * 6 4 3 10 10 C 1.46904 * 111.00162 * 303.95185 * 9 6 4 11 11 C 1.46906 * 110.99804 * 180.02562 * 9 6 4 12 12 C 1.50696 * 109.47133 * 189.99981 * 11 9 6 13 13 C 1.38636 * 119.74961 * 269.72845 * 12 11 9 14 14 C 1.37611 * 120.24980 * 179.72516 * 13 12 11 15 15 C 1.40717 * 119.74202 * 0.56439 * 14 13 12 16 16 C 1.41400 * 120.24539 * 179.68368 * 15 14 13 17 17 H 1.07994 * 120.00090 * 204.40900 * 16 15 14 18 18 C 1.39952 * 119.99631 * 24.40900 * 16 15 14 19 19 N 1.30819 * 120.00273 * 17.84643 * 18 16 15 20 20 Si 1.86792 * 119.99748 * 197.84555 * 18 16 15 21 21 H 1.48500 * 109.47078 * 89.99962 * 20 18 16 22 22 H 1.48499 * 109.47193 * 210.00078 * 20 18 16 23 23 H 1.48504 * 109.47370 * 330.00016 * 20 18 16 24 24 C 1.40719 * 119.51414 * 359.70514 * 15 14 13 25 25 C 1.37614 * 119.74045 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47082 * 299.99422 * 1 2 3 27 27 H 1.08991 * 109.47370 * 60.00464 * 1 2 3 28 28 H 1.08999 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47060 * 240.00049 * 2 1 3 30 30 H 1.09002 * 109.46947 * 119.99331 * 2 1 3 31 31 H 1.08996 * 109.47139 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47066 * 299.99979 * 7 6 4 33 33 H 1.09004 * 109.47091 * 59.99566 * 7 6 4 34 34 H 1.09007 * 109.46861 * 299.99984 * 8 6 4 35 35 H 1.08995 * 109.47223 * 59.99728 * 8 6 4 36 36 H 1.08998 * 109.47140 * 180.02562 * 8 6 4 37 37 H 1.09001 * 109.47007 * 59.99732 * 10 9 6 38 38 H 1.08998 * 109.46840 * 180.02562 * 10 9 6 39 39 H 1.09005 * 109.46669 * 300.00531 * 10 9 6 40 40 H 1.08999 * 109.46838 * 310.00184 * 11 9 6 41 41 H 1.09004 * 109.46930 * 69.99707 * 11 9 6 42 42 H 1.08002 * 119.87050 * 359.97438 * 13 12 11 43 43 H 1.07997 * 120.13132 * 180.27502 * 14 13 12 44 44 H 0.96991 * 120.00408 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.12971 * 179.97438 * 24 15 14 46 46 H 1.08011 * 119.87321 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 -0.0012 7 6 5.3234 2.9091 -0.6113 8 6 3.9999 3.4573 1.4357 9 7 3.0590 3.8234 -0.7955 10 6 2.8835 3.3038 -2.1583 11 6 3.5909 5.1926 -0.8190 12 6 2.5686 6.1182 -1.4267 13 6 2.5728 6.3449 -2.7944 14 6 1.6405 7.1837 -3.3609 15 6 0.6881 7.8216 -2.5448 16 6 -0.2705 8.6909 -3.1148 17 1 -0.7259 9.4625 -2.5119 18 6 -0.6290 8.5512 -4.4604 19 7 -0.3651 7.4385 -5.0956 20 14 -1.4846 9.9538 -5.3493 21 1 -0.4675 10.8402 -5.9697 22 1 -2.3713 9.4028 -6.4054 23 1 -2.2951 10.7334 -4.3795 24 6 0.6969 7.5885 -1.1571 25 6 1.6350 6.7414 -0.6131 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 5.7401 3.9163 -0.6113 32 1 5.9627 2.2518 -0.0219 33 1 5.2669 2.5388 -1.6349 34 1 3.0005 3.4776 1.8704 35 1 4.6391 2.8000 2.0251 36 1 4.4160 4.4647 1.4353 37 1 2.4238 2.3165 -2.1143 38 1 2.2420 3.9789 -2.7247 39 1 3.8551 3.2307 -2.6471 40 1 3.8124 5.5139 0.1987 41 1 4.5034 5.2177 -1.4147 42 1 3.3079 5.8581 -3.4181 43 1 1.6427 7.3554 -4.4272 44 1 -0.6133 7.3418 -6.0283 45 1 -0.0292 8.0733 -0.5213 46 1 1.6440 6.5612 0.4519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339791267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:30 Heat of formation + Delta-G solvation = -79.627143 kcal Electronic energy + Delta-G solvation = -25634.033319 eV Core-core repulsion = 22101.886847 eV Total energy + Delta-G solvation = -3532.146472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97890 -39.94875 -38.68578 -37.64954 -35.62767 -33.46562 -32.52300 -31.65327 -31.12454 -29.14854 -28.20957 -26.50746 -25.89645 -24.24242 -23.20726 -22.71887 -21.57415 -20.37810 -19.17175 -18.76320 -17.81604 -17.48777 -17.10253 -16.37694 -16.06414 -15.88315 -15.59739 -15.19373 -14.96461 -14.90871 -14.68577 -14.19393 -13.89892 -13.74849 -13.59263 -13.45348 -13.33929 -13.06561 -13.05260 -12.88273 -12.83651 -12.66566 -12.57197 -12.45701 -12.39582 -12.32528 -12.10833 -11.90455 -11.50281 -11.36769 -11.29954 -11.17087 -10.96857 -9.36421 -9.20902 -9.08118 -8.59686 -6.28592 0.95564 1.08788 1.23635 1.38893 1.51579 1.52921 1.68295 2.22508 2.64904 3.01325 3.51798 3.80467 3.89163 3.90283 3.99192 4.06776 4.13775 4.28941 4.31333 4.45446 4.48781 4.61946 4.63560 4.69626 4.70946 4.74258 4.76431 4.85437 4.90596 4.91687 5.03017 5.10490 5.12956 5.16737 5.20390 5.24973 5.43890 5.44957 5.54274 5.77069 5.94384 6.01070 6.12486 6.17439 6.34803 6.46562 6.72472 6.76946 7.00020 7.10765 8.36628 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.003410 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.665785 B = 8209.616529 C = 8842.717652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.481 3.519 5 O -0.536 6.536 6 C 0.113 3.887 7 C -0.169 4.169 8 C -0.138 4.138 9 N -0.520 5.520 10 C 0.023 3.977 11 C 0.120 3.880 12 C -0.191 4.191 13 C -0.093 4.093 14 C -0.191 4.191 15 C 0.080 3.920 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.826 5.826 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.245 4.245 25 C -0.069 4.069 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.286 0.714 45 H 0.092 0.908 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -10.505 8.330 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.325 3.675 5 O -0.425 6.425 6 C 0.022 3.978 7 C -0.227 4.227 8 C -0.196 4.196 9 N -0.245 5.245 10 C -0.125 4.125 11 C -0.006 4.006 12 C -0.193 4.193 13 C -0.112 4.112 14 C -0.210 4.210 15 C 0.078 3.922 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.453 5.453 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.264 4.264 25 C -0.088 4.088 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.293 -10.953 8.348 15.142 hybrid contribution 0.059 0.244 -1.248 1.273 sum 6.353 -10.709 7.100 14.334 Atomic orbital electron populations 1.21800 0.91031 1.04156 1.03348 1.23279 0.96858 0.79709 1.02448 1.86709 1.23932 1.32958 1.82681 1.23853 0.80798 0.92208 0.70676 1.90619 1.61157 1.43454 1.47290 1.21127 0.91707 0.86382 0.98573 1.22358 0.94768 1.04298 1.01306 1.21942 1.03760 1.03103 0.90753 1.62303 1.47211 1.01837 1.13190 1.22411 1.00236 1.00047 0.89793 1.20885 0.93512 0.85159 1.01040 1.19216 1.02509 1.04820 0.92745 1.20728 0.97822 0.97982 0.94640 1.21221 0.97293 1.03380 0.99155 1.17946 0.91252 0.90917 0.92126 1.19842 1.21821 1.15509 0.96222 0.90991 1.26695 0.95191 0.97989 0.97909 1.69882 1.38226 1.25174 1.11975 0.85254 0.78492 0.78242 0.78022 1.18736 1.19351 1.18301 1.21162 1.03521 1.06672 0.95074 1.20645 0.94086 0.95505 0.98519 0.91432 0.92336 0.87880 0.91646 0.90747 0.89149 0.90271 0.92781 0.91227 0.90284 0.88813 0.92494 0.91772 0.94655 0.88556 0.93832 0.88200 0.88612 0.90342 0.88981 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.12 6.19 71.98 0.45 1.56 16 3 O -0.35 -9.89 8.96 -51.41 -0.46 -10.35 16 4 C 0.48 13.65 5.50 71.24 0.39 14.04 16 5 O -0.54 -16.65 15.84 21.96 0.35 -16.30 16 6 C 0.11 2.84 0.67 2.78 0.00 2.84 16 7 C -0.17 -3.72 7.32 71.98 0.53 -3.20 16 8 C -0.14 -2.80 8.25 71.98 0.59 -2.20 16 9 N -0.52 -15.56 4.36 -881.38 -3.84 -19.41 16 10 C 0.02 0.74 8.53 127.69 1.09 1.83 16 11 C 0.12 3.59 4.21 85.55 0.36 3.95 16 12 C -0.19 -7.61 4.91 -19.68 -0.10 -7.70 16 13 C -0.09 -4.13 7.87 22.22 0.17 -3.96 16 14 C -0.19 -10.00 8.70 22.73 0.20 -9.80 16 15 C 0.08 4.34 5.58 -21.29 -0.12 4.22 16 16 C -0.50 -27.66 9.05 23.46 0.21 -27.45 16 17 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 18 C 0.04 1.87 5.14 85.26 0.44 2.31 16 19 N -0.83 -43.84 10.95 21.83 0.24 -43.61 16 20 Si 0.98 38.78 29.59 68.60 2.03 40.81 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 C -0.24 -12.01 9.80 22.73 0.22 -11.78 16 25 C -0.07 -2.91 9.67 22.22 0.21 -2.70 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.09 1.72 6.64 -2.39 -0.02 1.71 16 32 H 0.08 1.64 7.87 -2.38 -0.02 1.62 16 33 H 0.05 1.29 6.49 -2.38 -0.02 1.28 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.62 6.20 -2.39 -0.01 1.61 16 37 H 0.06 1.80 6.31 -2.39 -0.02 1.79 16 38 H 0.06 2.42 5.90 -2.39 -0.01 2.40 16 39 H 0.04 1.02 6.40 -2.38 -0.02 1.00 16 40 H 0.10 2.47 5.77 -2.39 -0.01 2.45 16 41 H 0.04 1.21 6.80 -2.38 -0.02 1.20 16 42 H 0.10 4.00 7.99 -2.91 -0.02 3.98 16 43 H 0.10 5.31 6.16 -2.91 -0.02 5.30 16 44 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 45 H 0.09 4.34 8.06 -2.91 -0.02 4.31 16 46 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -62.60 364.53 4.68 -57.92 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.97 Total: 30.85 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 5.40 Total: -39.91 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -3.60 Total: -63.01 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.11 Total: -26.66 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -62.60 4.68 -57.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339791267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.706 kcal (2) G-P(sol) polarization free energy of solvation -62.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds