Wall clock time and date at job start Tue Mar 31 2020 08:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47200 * 2 1 4 4 C 1.46496 * 120.00397 * 270.00763 * 3 2 1 5 5 C 1.53001 * 109.46897 * 270.00034 * 4 3 2 6 6 H 1.09008 * 109.46867 * 304.99773 * 5 4 3 7 7 C 1.52998 * 109.47172 * 185.00039 * 5 4 3 8 8 O 1.42893 * 109.47684 * 64.99525 * 5 4 3 9 9 C 1.34778 * 119.99691 * 90.00209 * 3 2 1 10 10 O 1.21283 * 119.99788 * 180.02562 * 9 3 2 11 11 C 1.50698 * 119.99943 * 0.02562 * 9 3 2 12 12 C 1.53001 * 109.47309 * 180.02562 * 11 9 3 13 13 H 1.09002 * 109.46683 * 305.97825 * 12 11 9 14 14 C 1.50701 * 109.46938 * 65.97575 * 12 11 9 15 15 H 1.07996 * 120.00200 * 26.91362 * 14 12 11 16 16 C 1.37882 * 119.99637 * 206.91188 * 14 12 11 17 17 N 1.31508 * 120.00298 * 353.28146 * 16 14 12 18 18 Si 1.86804 * 119.99594 * 173.55553 * 16 14 12 19 19 H 1.48507 * 109.47029 * 179.72580 * 18 16 14 20 20 H 1.48500 * 109.47296 * 299.72146 * 18 16 14 21 21 H 1.48501 * 109.47052 * 59.72587 * 18 16 14 22 22 C 1.50691 * 109.47347 * 185.97825 * 12 11 9 23 23 C 1.38237 * 120.00366 * 294.44456 * 22 12 11 24 24 C 1.38235 * 120.00426 * 179.79030 * 23 22 12 25 25 C 1.38236 * 119.99747 * 0.44087 * 24 23 22 26 26 C 1.38240 * 120.00193 * 359.81061 * 25 24 23 27 27 C 1.38235 * 120.00109 * 114.71927 * 22 12 11 28 28 H 1.08999 * 109.47349 * 59.99560 * 1 2 3 29 29 H 1.09003 * 109.46666 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46716 * 299.99742 * 1 2 3 31 31 H 1.09007 * 109.46774 * 240.00884 * 2 1 3 32 32 H 1.08999 * 109.47349 * 120.00440 * 2 1 3 33 33 H 1.08999 * 109.47196 * 29.99646 * 4 3 2 34 34 H 1.08999 * 109.47605 * 149.99602 * 4 3 2 35 35 H 1.09001 * 109.47011 * 59.99616 * 7 5 4 36 36 H 1.08996 * 109.47182 * 179.97438 * 7 5 4 37 37 H 1.08995 * 109.47282 * 299.99762 * 7 5 4 38 38 H 0.96693 * 114.00422 * 180.02562 * 8 5 4 39 39 H 1.08998 * 109.46893 * 60.00147 * 11 9 3 40 40 H 1.09000 * 109.47344 * 300.00377 * 11 9 3 41 41 H 0.96999 * 120.00265 * 354.68917 * 17 16 14 42 42 H 1.08005 * 119.99617 * 359.97438 * 23 22 12 43 43 H 1.07995 * 119.99965 * 180.27799 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83622 * 25 24 23 45 45 H 1.07993 * 120.00167 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00066 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.7074 1.8315 -1.7104 6 1 4.3863 2.1343 -0.9131 7 6 3.9995 2.6525 -2.9680 8 8 3.8943 0.4435 -1.9936 9 6 2.2431 2.0165 1.1672 10 8 2.6469 3.1601 1.1673 11 6 1.9924 1.3058 2.4723 12 6 2.3232 2.2434 3.6353 13 1 3.3386 2.6221 3.5191 14 6 1.3541 3.3975 3.6413 15 1 0.3658 3.2749 3.2235 16 6 1.7293 4.6098 4.1803 17 7 2.8802 4.7232 4.8064 18 14 0.5993 6.0895 4.0277 19 1 1.2258 7.2612 4.6911 20 1 0.3749 6.3950 2.5920 21 1 -0.7009 5.7886 4.6790 22 6 2.2141 1.4890 4.9353 23 6 0.9869 1.0125 5.3571 24 6 0.8875 0.3168 6.5475 25 6 2.0138 0.1054 7.3205 26 6 3.2402 0.5865 6.9014 27 6 3.3402 1.2785 5.7088 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6879 -2.0283 34 1 2.0954 3.1412 -1.1383 35 1 3.8570 3.7113 -2.7520 36 1 5.0290 2.4816 -3.2825 37 1 3.3207 2.3498 -3.7653 38 1 4.7899 0.2175 -2.2799 39 1 2.6230 0.4186 2.5297 40 1 0.9446 1.0112 2.5302 41 1 3.4300 3.9383 4.9567 42 1 0.1062 1.1812 4.7551 43 1 -0.0704 -0.0594 6.8747 44 1 1.9358 -0.4358 8.2518 45 1 4.1202 0.4210 7.5051 46 1 4.2983 1.6542 5.3813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341291606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:03 Heat of formation + Delta-G solvation = -75.066020 kcal Electronic energy + Delta-G solvation = -25971.209605 eV Core-core repulsion = 22439.260918 eV Total energy + Delta-G solvation = -3531.948687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.59294 -38.43085 -37.29393 -35.27509 -34.25299 -31.99072 -31.19448 -30.09519 -29.86974 -29.01295 -26.48839 -24.63217 -23.16685 -22.67750 -21.69091 -21.39070 -19.91597 -18.38434 -17.45830 -16.80588 -16.43886 -15.88109 -15.73379 -15.14503 -14.49813 -14.24754 -14.10379 -13.73826 -13.62601 -13.49109 -13.20328 -12.85189 -12.64974 -12.52353 -12.34870 -12.26271 -12.05496 -11.94042 -11.73602 -11.59697 -11.30521 -11.12375 -11.05692 -10.71288 -10.64214 -10.40762 -10.10791 -10.04116 -10.02251 -9.63101 -8.95611 -8.58294 -8.27861 -8.18336 -8.12271 -7.61649 -6.20078 -3.88495 2.20666 2.26359 3.44917 3.46384 3.51184 3.56345 3.72167 4.23165 4.62426 4.69569 4.91679 5.02436 5.10883 5.21417 5.25784 5.43332 5.49346 5.55589 5.60998 5.64730 5.66306 5.75058 5.78539 5.87346 5.88362 5.95671 6.03250 6.04589 6.08866 6.17245 6.20280 6.30035 6.35141 6.46342 6.71977 6.80472 6.93323 7.00833 7.22936 7.24949 7.40123 7.59020 7.75373 7.87462 7.96976 8.25864 8.54216 8.98562 9.03393 9.80083 11.19360 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.005106 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.572728 B = 5482.264333 C = 6667.209178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 N -0.622 5.622 4 C 0.127 3.873 5 C 0.084 3.916 6 H 0.060 0.940 7 C -0.182 4.182 8 O -0.565 6.565 9 C 0.515 3.485 10 O -0.502 6.502 11 C -0.113 4.113 12 C 0.072 3.928 13 H 0.048 0.952 14 C -0.565 4.565 15 H 0.044 0.956 16 C 0.032 3.968 17 N -0.907 5.907 18 Si 1.059 2.941 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.291 1.291 22 C -0.032 4.032 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.372 0.628 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.271 0.729 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -11.296 -10.051 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.358 5.358 4 C 0.004 3.996 5 C 0.024 3.976 6 H 0.078 0.922 7 C -0.240 4.240 8 O -0.371 6.371 9 C 0.304 3.696 10 O -0.374 6.374 11 C -0.153 4.153 12 C 0.053 3.947 13 H 0.066 0.934 14 C -0.603 4.603 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.542 5.542 18 Si 0.889 3.111 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.032 4.032 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.218 0.782 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.971 -9.024 -9.521 13.154 hybrid contribution 0.593 -1.580 -0.455 1.748 sum -0.378 -10.604 -9.975 14.564 Atomic orbital electron populations 1.22242 0.96684 1.01664 1.02489 1.21440 0.93580 0.82931 1.03124 1.48052 1.68179 1.14223 1.05395 1.21335 0.93507 0.98965 0.85821 1.22321 0.98548 0.81040 0.95681 0.92239 1.22436 1.01746 1.01374 0.98468 1.86498 1.35319 1.25163 1.90074 1.20905 0.76897 0.86892 0.84915 1.90730 1.42936 1.17034 1.86652 1.21686 1.01863 0.98525 0.93246 1.17878 0.99680 0.91913 0.85233 0.93363 1.21517 0.99862 0.96420 1.42456 0.93752 1.25560 0.98080 1.00457 0.93262 1.70727 1.11515 1.33733 1.38241 0.83697 0.74932 0.76275 0.76229 1.20959 1.21539 1.21744 1.20852 0.91943 0.91631 0.98821 1.20918 0.97738 0.97657 0.96094 1.21012 0.97599 1.00470 0.95729 1.20822 0.93321 1.03135 0.99802 1.20960 0.97026 0.99501 0.96786 1.21071 0.98527 0.99794 0.95462 0.92800 0.92016 0.92094 0.90105 0.90758 0.90791 0.88730 0.91234 0.92415 0.91943 0.78191 0.91814 0.90281 0.91813 0.86738 0.87465 0.87600 0.87480 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.47 5.75 -4.04 -0.02 1.44 16 3 N -0.62 -10.04 2.44 -173.68 -0.42 -10.47 16 4 C 0.13 1.83 5.09 -4.04 -0.02 1.81 16 5 C 0.08 1.07 3.82 -26.73 -0.10 0.96 16 6 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 7 C -0.18 -1.83 9.53 37.16 0.35 -1.48 16 8 O -0.57 -6.48 12.14 -35.23 -0.43 -6.91 16 9 C 0.52 10.62 7.43 -10.99 -0.08 10.54 16 10 O -0.50 -12.62 14.60 5.55 0.08 -12.53 16 11 C -0.11 -2.27 3.51 -27.88 -0.10 -2.37 16 12 C 0.07 1.75 1.23 -92.93 -0.11 1.64 16 13 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 14 C -0.57 -15.52 6.35 -34.44 -0.22 -15.74 16 15 H 0.04 1.23 7.82 -52.49 -0.41 0.82 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -27.89 13.56 55.43 0.75 -27.14 16 18 Si 1.06 26.46 29.91 -169.99 -5.08 21.38 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.03 -0.71 4.53 -104.63 -0.47 -1.19 16 23 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 25 C -0.15 -2.68 10.05 -39.58 -0.40 -3.07 16 26 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 27 C -0.13 -2.75 9.18 -39.58 -0.36 -3.12 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.82 7.22 -51.93 -0.38 0.45 16 31 H 0.08 0.98 7.12 -51.93 -0.37 0.61 16 32 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.09 1.51 7.42 -51.93 -0.39 1.13 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.37 2.82 9.08 45.56 0.41 3.23 16 39 H 0.06 1.15 7.40 -51.93 -0.38 0.76 16 40 H 0.08 1.50 7.01 -51.93 -0.36 1.14 16 41 H 0.27 8.21 6.24 -40.82 -0.25 7.95 16 42 H 0.11 2.32 7.85 -52.48 -0.41 1.91 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -33.86 374.35 -8.52 -42.38 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.66 Total: 7.08 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.40 Total: -19.42 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.33 Total: -37.61 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.35 Total: -19.44 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.08 Total: 21.38 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.86 -8.52 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341291606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.689 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds