Wall clock time and date at job start Tue Mar 31 2020 08:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47271 * 2 1 4 4 C 1.46500 * 120.00010 * 90.00403 * 3 2 1 5 5 C 1.52998 * 109.47106 * 90.00284 * 4 3 2 6 6 H 1.09002 * 109.46812 * 304.99962 * 5 4 3 7 7 C 1.52999 * 109.46907 * 185.00009 * 5 4 3 8 8 O 1.42897 * 109.47321 * 64.99799 * 5 4 3 9 9 C 1.34781 * 120.00141 * 270.00382 * 3 2 1 10 10 O 1.21286 * 120.00161 * 179.97438 * 9 3 2 11 11 C 1.50700 * 119.99666 * 0.02562 * 9 3 2 12 12 C 1.53001 * 109.46699 * 180.02562 * 11 9 3 13 13 H 1.08992 * 109.47437 * 54.99981 * 12 11 9 14 14 C 1.50697 * 109.47098 * 294.99672 * 12 11 9 15 15 H 1.08003 * 120.00155 * 325.84864 * 14 12 11 16 16 C 1.37879 * 120.00162 * 145.85970 * 14 12 11 17 17 N 1.31512 * 119.99848 * 6.10872 * 16 14 12 18 18 Si 1.86793 * 119.99940 * 186.11951 * 16 14 12 19 19 H 1.48504 * 109.47623 * 89.99622 * 18 16 14 20 20 H 1.48510 * 109.47165 * 209.99373 * 18 16 14 21 21 H 1.48503 * 109.47637 * 329.99117 * 18 16 14 22 22 C 1.50706 * 109.46782 * 174.99829 * 12 11 9 23 23 C 1.38234 * 120.00143 * 63.45641 * 22 12 11 24 24 C 1.38239 * 119.99943 * 179.80602 * 23 22 12 25 25 C 1.38233 * 120.00033 * 0.39959 * 24 23 22 26 26 C 1.38241 * 120.00052 * 359.85521 * 25 24 23 27 27 C 1.38237 * 119.99742 * 243.72472 * 22 12 11 28 28 H 1.08995 * 109.47306 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46633 * 299.99785 * 1 2 3 30 30 H 1.08995 * 109.47039 * 59.99541 * 1 2 3 31 31 H 1.09003 * 109.46633 * 240.00215 * 2 1 3 32 32 H 1.09000 * 109.47466 * 120.00460 * 2 1 3 33 33 H 1.09001 * 109.47027 * 329.99796 * 4 3 2 34 34 H 1.09000 * 109.47099 * 209.99966 * 4 3 2 35 35 H 1.09003 * 109.47131 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.47327 * 59.99658 * 7 5 4 37 37 H 1.09002 * 109.47347 * 299.99626 * 7 5 4 38 38 H 0.96699 * 113.99710 * 179.97438 * 8 5 4 39 39 H 1.09001 * 109.46736 * 299.99448 * 11 9 3 40 40 H 1.08990 * 109.47434 * 60.00019 * 11 9 3 41 41 H 0.97003 * 120.00191 * 180.02562 * 17 16 14 42 42 H 1.08000 * 119.99821 * 359.97438 * 23 22 12 43 43 H 1.07998 * 119.99574 * 180.23128 * 24 23 22 44 44 H 1.07995 * 120.00282 * 179.82941 * 25 24 23 45 45 H 1.07999 * 120.00278 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00360 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 1.2687 5 6 3.7077 1.8313 1.7102 6 1 3.9004 0.7594 1.7547 7 6 3.9273 2.4468 3.0936 8 8 4.5994 2.4371 0.7723 9 6 2.2430 2.0166 -1.1672 10 8 2.6469 3.1602 -1.1672 11 6 1.9912 1.3063 -2.4723 12 6 2.3233 2.2435 -3.6352 13 1 3.3452 2.6071 -3.5284 14 6 1.3711 3.4115 -3.6267 15 1 0.3487 3.2725 -3.3074 16 6 1.8049 4.6576 -4.0268 17 7 3.0116 4.8039 -4.5288 18 14 0.6788 6.1380 -3.8557 19 1 0.8859 6.7666 -2.5263 20 1 0.9901 7.1229 -4.9227 21 1 -0.7351 5.7019 -3.9821 22 6 2.1896 1.4958 -4.9368 23 6 0.9590 1.0010 -5.3265 24 6 0.8356 0.3186 -6.5223 25 6 1.9444 0.1239 -7.3246 26 6 3.1760 0.6141 -6.9324 27 6 3.2986 1.2999 -5.7384 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5819 1.6876 2.0284 34 1 2.0957 3.1410 1.1384 35 1 4.9567 2.2752 3.4084 36 1 3.2471 1.9848 3.8091 37 1 3.7346 3.5188 3.0492 38 1 5.5349 2.3245 0.9898 39 1 2.6211 0.4187 -2.5302 40 1 0.9432 1.0126 -2.5298 41 1 3.3170 5.6806 -4.8100 42 1 0.0935 1.1499 -4.6979 43 1 -0.1265 -0.0647 -6.8285 44 1 1.8486 -0.4116 -8.2575 45 1 4.0424 0.4616 -7.5590 46 1 4.2608 1.6831 -5.4322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341291609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:22 Heat of formation + Delta-G solvation = -89.372173 kcal Electronic energy + Delta-G solvation = -26062.642626 eV Core-core repulsion = 22530.073578 eV Total energy + Delta-G solvation = -3532.569048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.85977 -39.77790 -38.27570 -36.54783 -35.74137 -33.45566 -32.69200 -31.49150 -30.91571 -30.36277 -28.05832 -26.58011 -24.54905 -23.89607 -23.12538 -22.40742 -21.27737 -19.60569 -18.54109 -18.37624 -17.74056 -17.14756 -17.01426 -16.43014 -16.27021 -15.68863 -15.44868 -15.20361 -14.80790 -14.59323 -14.54866 -14.12931 -13.97676 -13.72653 -13.52078 -13.45186 -13.30973 -13.13725 -12.99249 -12.87039 -12.81752 -12.60247 -12.46519 -12.34514 -11.97454 -11.84106 -11.80251 -11.65076 -11.26045 -10.93383 -10.87380 -10.52944 -10.19013 -9.53249 -9.38355 -9.17217 -8.03172 -6.05054 0.78798 0.85669 1.32512 1.38635 1.42476 2.15461 2.29695 2.46055 3.19955 3.36732 3.42848 3.97393 4.05769 4.13396 4.24440 4.26981 4.27787 4.36557 4.42643 4.45049 4.55552 4.56115 4.61350 4.71145 4.75033 4.83222 4.91719 4.95811 4.98250 4.99281 5.02950 5.07802 5.24492 5.29996 5.39024 5.45945 5.54138 5.65109 5.79423 5.84507 5.91703 5.97716 6.19444 6.43814 6.47906 6.73349 7.00248 7.02522 7.57055 7.75944 9.06824 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.005340 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.751186 B = 5242.330394 C = 6328.000325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.622 5.622 4 C 0.118 3.882 5 C 0.082 3.918 6 H 0.069 0.931 7 C -0.174 4.174 8 O -0.581 6.581 9 C 0.511 3.489 10 O -0.541 6.541 11 C -0.108 4.108 12 C 0.084 3.916 13 H 0.019 0.981 14 C -0.481 4.481 15 H 0.044 0.956 16 C 0.022 3.978 17 N -0.917 5.917 18 Si 0.934 3.066 19 H -0.292 1.292 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.044 4.044 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.127 4.127 27 C -0.144 4.144 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.380 0.620 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.132 0.868 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 -15.433 10.479 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.357 5.357 4 C -0.005 4.005 5 C 0.023 3.977 6 H 0.087 0.913 7 C -0.232 4.232 8 O -0.388 6.388 9 C 0.299 3.701 10 O -0.416 6.416 11 C -0.148 4.148 12 C 0.065 3.935 13 H 0.037 0.963 14 C -0.519 4.519 15 H 0.062 0.938 16 C -0.176 4.176 17 N -0.557 5.557 18 Si 0.761 3.239 19 H -0.219 1.219 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.045 4.045 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.163 4.163 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.228 0.772 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.131 0.869 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.150 0.850 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.568 -14.507 10.111 17.868 hybrid contribution 0.378 1.514 0.349 1.599 sum -2.190 -12.992 10.460 16.823 Atomic orbital electron populations 1.22194 0.95458 1.03221 1.01684 1.21744 0.94841 0.81110 1.04269 1.48080 1.67500 1.15192 1.04964 1.21539 0.95170 0.97693 0.86054 1.22376 0.90244 0.96506 0.88592 0.91272 1.22386 1.03527 1.01213 0.96080 1.86861 1.20093 1.79879 1.51926 1.20913 0.76568 0.86522 0.86072 1.90737 1.44095 1.19567 1.87189 1.21640 1.02424 0.98308 0.92477 1.17598 0.97256 0.91227 0.87412 0.96289 1.20925 0.95947 0.93356 1.41641 0.93819 1.25483 0.96004 1.01071 0.95044 1.70061 1.19124 1.23021 1.43448 0.85934 0.80252 0.80805 0.76886 1.21875 1.21061 1.18613 1.20568 0.93235 0.92542 0.98139 1.21008 0.96635 0.99147 0.97742 1.21368 0.99488 0.99201 0.94223 1.21262 0.92380 1.02136 1.00738 1.21280 0.98786 0.98569 0.95885 1.21086 0.98094 1.00545 0.96557 0.89142 0.92298 0.94386 0.90360 0.87901 0.86220 0.93605 0.90902 0.89332 0.93559 0.77209 0.90170 0.89268 0.93887 0.86888 0.84037 0.83729 0.85026 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.24 71.98 0.74 -2.50 16 2 C 0.10 2.19 5.93 86.38 0.51 2.70 16 3 N -0.62 -19.75 2.46 -821.80 -2.02 -21.77 16 4 C 0.12 3.35 5.14 86.38 0.44 3.79 16 5 C 0.08 2.02 3.82 30.59 0.12 2.13 16 6 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.17 -3.15 9.53 71.98 0.69 -2.47 16 8 O -0.58 -19.55 12.11 -141.60 -1.71 -21.27 16 9 C 0.51 22.48 7.05 87.66 0.62 23.10 16 10 O -0.54 -30.45 13.77 4.33 0.06 -30.39 16 11 C -0.11 -4.55 3.50 29.85 0.10 -4.44 16 12 C 0.08 4.40 1.67 -12.28 -0.02 4.38 16 13 H 0.02 1.17 6.98 -2.39 -0.02 1.16 16 14 C -0.48 -27.78 6.37 25.60 0.16 -27.62 16 15 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 16 C 0.02 1.37 5.45 84.66 0.46 1.83 16 17 N -0.92 -58.85 12.87 21.45 0.28 -58.57 16 18 Si 0.93 48.81 29.54 68.60 2.03 50.84 16 19 H -0.29 -15.63 7.11 99.48 0.71 -14.92 16 20 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 21 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.04 -2.07 4.77 -19.86 -0.09 -2.16 16 23 C -0.13 -5.15 8.86 22.27 0.20 -4.95 16 24 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 25 C -0.15 -4.69 10.05 22.27 0.22 -4.47 16 26 C -0.13 -4.61 10.05 22.27 0.22 -4.39 16 27 C -0.14 -6.47 9.67 22.27 0.22 -6.26 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.93 7.22 -2.39 -0.02 0.91 16 31 H 0.08 1.69 6.44 -2.39 -0.02 1.68 16 32 H 0.10 1.50 8.07 -2.39 -0.02 1.48 16 33 H 0.12 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.05 1.69 7.42 -2.39 -0.02 1.67 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.38 9.18 9.08 -74.06 -0.67 8.50 16 39 H 0.08 2.98 7.40 -2.39 -0.02 2.96 16 40 H 0.09 3.40 6.82 -2.39 -0.02 3.38 16 41 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.11 4.44 7.76 -2.91 -0.02 4.42 16 43 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 45 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 46 H 0.09 4.33 7.95 -2.91 -0.02 4.31 16 Total: -1.00 -83.04 376.59 3.72 -79.32 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.28 Total: 27.11 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 4.81 Total: -25.26 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.74 Total: -80.34 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -1.65 Total: -51.66 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -83.04 3.72 -79.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341291609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.053 kcal (2) G-P(sol) polarization free energy of solvation -83.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds