Wall clock time and date at job start Tue Mar 31 2020 08:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.47145 * 2 1 4 4 C 1.46496 * 119.99901 * 85.33214 * 3 2 1 5 5 C 1.50708 * 109.46771 * 83.90467 * 4 3 2 6 6 H 1.07993 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99720 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00063 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99783 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46886 * 60.00266 * 9 7 5 11 11 H 1.48500 * 109.46870 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47264 * 300.00010 * 9 7 5 13 13 C 1.34775 * 119.99857 * 265.33448 * 3 2 1 14 14 O 1.21285 * 120.00217 * 355.16265 * 13 3 2 15 15 C 1.50700 * 119.99981 * 175.15270 * 13 3 2 16 16 H 1.08997 * 109.47101 * 316.24195 * 15 13 3 17 17 O 1.42902 * 109.47377 * 196.23655 * 15 13 3 18 18 C 1.53003 * 109.46679 * 76.23977 * 15 13 3 19 19 H 1.08998 * 109.47234 * 306.00855 * 18 15 13 20 20 C 1.53000 * 109.47313 * 66.01183 * 18 15 13 21 21 C 1.50706 * 109.46996 * 186.00992 * 18 15 13 22 22 C 1.38235 * 119.99706 * 299.72667 * 21 18 15 23 23 C 1.38236 * 119.99636 * 179.78890 * 22 21 18 24 24 C 1.38237 * 120.00014 * 0.44428 * 23 22 21 25 25 C 1.50702 * 119.99991 * 179.83633 * 24 23 22 26 26 C 1.38236 * 120.00188 * 359.80595 * 24 23 22 27 27 C 1.38232 * 120.00050 * 120.00067 * 21 18 15 28 28 H 1.09000 * 109.46900 * 184.96939 * 1 2 3 29 29 H 1.09003 * 109.46739 * 304.96822 * 1 2 3 30 30 H 1.08997 * 109.47085 * 64.96787 * 1 2 3 31 31 H 1.08999 * 109.47333 * 240.00441 * 2 1 3 32 32 H 1.09004 * 109.47291 * 119.99855 * 2 1 3 33 33 H 1.09001 * 109.47205 * 203.89372 * 4 3 2 34 34 H 1.08998 * 109.47572 * 323.90320 * 4 3 2 35 35 H 0.97009 * 119.99687 * 179.97438 * 8 7 5 36 36 H 0.96701 * 113.99860 * 300.00682 * 17 15 13 37 37 H 1.09003 * 109.47083 * 299.99862 * 20 18 15 38 38 H 1.08998 * 109.47238 * 59.99675 * 20 18 15 39 39 H 1.08999 * 109.47220 * 180.02562 * 20 18 15 40 40 H 1.07997 * 120.00355 * 359.97438 * 22 21 18 41 41 H 1.08002 * 120.00346 * 180.27457 * 23 22 21 42 42 H 1.09002 * 109.46858 * 269.97666 * 25 24 23 43 43 H 1.08994 * 109.46994 * 29.97226 * 25 24 23 44 44 H 1.09004 * 109.47166 * 149.97532 * 25 24 23 45 45 H 1.07994 * 119.99963 * 180.02562 * 26 24 23 46 46 H 1.08002 * 119.99732 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1652 2.1063 1.2645 5 6 3.4938 1.7643 1.8882 6 1 4.1617 1.0755 1.3925 7 6 3.8566 2.3308 3.0917 8 7 3.0434 3.1700 3.6951 9 14 5.5031 1.9064 3.8652 10 1 6.5988 2.2947 2.9412 11 1 5.6526 2.6423 5.1463 12 1 5.5672 0.4453 4.1227 13 6 2.3325 1.9849 -1.1633 14 8 2.2951 1.3584 -2.2012 15 6 2.7300 3.4385 -1.1747 16 1 2.0587 4.0038 -0.5284 17 8 2.6461 3.9450 -2.5083 18 6 4.1660 3.5784 -0.6654 19 1 4.2548 3.0967 0.3083 20 6 5.1249 2.9114 -1.6537 21 6 4.5133 5.0392 -0.5367 22 6 4.4771 5.8588 -1.6493 23 6 4.7914 7.1997 -1.5304 24 6 5.1508 7.7190 -0.3007 25 6 5.4970 9.1800 -0.1718 26 6 5.1920 6.8983 0.8109 27 6 4.8735 5.5583 0.6928 28 1 -0.3633 -1.0238 0.0890 29 1 -0.3633 0.5890 0.8422 30 1 -0.3633 0.4348 -0.9311 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1177 3.1788 1.0760 34 1 1.3611 1.8205 1.9427 35 1 3.2985 3.5683 4.5421 36 1 3.2185 3.4876 -3.1394 37 1 4.8737 1.8548 -1.7468 38 1 5.0361 3.3931 -2.6274 39 1 6.1478 3.0107 -1.2907 40 1 4.2004 5.4523 -2.6108 41 1 4.7589 7.8411 -2.3987 42 1 6.5658 9.3160 -0.3370 43 1 4.9392 9.7523 -0.9129 44 1 5.2366 9.5283 0.8277 45 1 5.4724 7.3041 1.7716 46 1 4.9056 4.9170 1.5612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344174779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:35 Heat of formation + Delta-G solvation = -80.376150 kcal Electronic energy + Delta-G solvation = -26600.423191 eV Core-core repulsion = 23068.244240 eV Total energy + Delta-G solvation = -3532.178951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.07036 -38.82087 -36.61489 -35.31255 -33.64234 -32.86061 -31.20572 -30.49789 -30.26339 -27.33490 -26.70802 -26.32212 -23.19408 -22.81868 -22.31406 -21.49548 -19.79247 -18.69594 -17.00741 -16.63776 -16.23351 -15.67431 -15.54202 -14.91437 -14.71064 -14.50049 -14.29098 -13.91234 -13.53754 -13.50800 -13.02398 -12.93427 -12.79140 -12.36152 -12.21617 -12.15345 -11.94019 -11.79730 -11.65370 -11.58471 -11.45098 -11.22684 -11.02677 -10.91192 -10.77828 -10.58149 -10.51009 -10.39578 -10.14905 -9.92857 -9.72818 -8.86389 -8.61512 -8.45931 -8.03622 -7.79175 -6.28284 -4.35701 1.73780 1.86716 3.16603 3.22015 3.23067 3.29222 3.83286 4.17617 4.24620 4.76684 5.02385 5.06211 5.16123 5.20557 5.31902 5.40941 5.48779 5.53831 5.61157 5.66957 5.68492 5.79768 5.86737 5.86979 5.92557 5.98535 6.09301 6.16544 6.23472 6.25734 6.38744 6.46841 6.50233 6.55303 6.61944 6.71566 6.82016 6.88893 6.98421 7.09331 7.24724 7.44436 7.47929 7.65461 7.90061 7.93886 8.26696 8.67610 8.90123 9.30669 10.77208 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.006574 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.883158 B = 4257.993369 C = 6036.537459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.590 5.590 4 C 0.232 3.768 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.491 3.509 14 O -0.571 6.571 15 C 0.108 3.892 16 H 0.120 0.880 17 O -0.544 6.544 18 C -0.100 4.100 19 H 0.142 0.858 20 C -0.144 4.144 21 C -0.069 4.069 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.100 4.100 25 C -0.110 4.110 26 C -0.126 4.126 27 C -0.097 4.097 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.267 0.733 36 H 0.374 0.626 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 5.024 -6.030 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.112 3.888 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.279 3.721 14 O -0.453 6.453 15 C 0.046 3.954 16 H 0.137 0.863 17 O -0.350 6.350 18 C -0.118 4.118 19 H 0.159 0.841 20 C -0.201 4.201 21 C -0.069 4.069 22 C -0.119 4.119 23 C -0.150 4.150 24 C -0.100 4.100 25 C -0.166 4.166 26 C -0.144 4.144 27 C -0.115 4.115 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.109 5.232 -6.097 8.306 hybrid contribution 1.192 -0.574 0.580 1.445 sum 3.301 4.658 -5.517 7.939 Atomic orbital electron populations 1.22107 0.96845 1.01323 1.01899 1.21252 0.93391 0.83912 1.02601 1.48272 1.62229 1.13648 1.08016 1.19530 0.97527 0.92312 0.79397 1.21358 1.02641 1.27950 1.05842 0.91899 1.24905 0.97205 0.94691 0.96539 1.69915 1.36079 1.28791 1.17073 0.86713 0.84067 0.78935 0.78872 1.19751 1.21013 1.20038 1.21307 0.76979 0.90143 0.83676 1.90583 1.55720 1.66404 1.32573 1.21801 0.97555 0.91422 0.84614 0.86257 1.86544 1.69464 1.60560 1.18427 1.21181 0.92972 0.93032 1.04660 0.84093 1.21794 0.99492 1.00542 0.98241 1.19723 0.98921 0.95080 0.93188 1.21201 0.98430 0.93212 0.99060 1.20918 1.01924 0.95548 0.96587 1.19829 1.00667 0.95709 0.93756 1.20734 1.01224 0.92479 1.02206 1.20962 1.01759 0.93854 0.97816 1.21297 0.97336 0.95204 0.97663 0.92364 0.92372 0.93069 0.90897 0.90435 0.94095 0.94631 0.92281 0.77695 0.92128 0.93035 0.92227 0.85491 0.86896 0.91770 0.92011 0.91904 0.86663 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.11 2.03 6.23 -4.04 -0.03 2.01 16 3 N -0.59 -12.01 2.46 -175.05 -0.43 -12.44 16 4 C 0.23 5.18 4.70 -5.19 -0.02 5.15 16 5 C -0.54 -12.83 6.91 -34.44 -0.24 -13.07 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.88 -22.51 13.29 55.43 0.74 -21.77 16 9 Si 0.89 19.30 29.54 -169.99 -5.02 14.28 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 13 C 0.49 10.00 6.03 -10.99 -0.07 9.94 16 14 O -0.57 -12.51 15.71 -13.81 -0.22 -12.73 16 15 C 0.11 2.01 2.25 -27.88 -0.06 1.95 16 16 H 0.12 2.35 6.71 -51.93 -0.35 2.00 16 17 O -0.54 -9.41 10.47 -54.60 -0.57 -9.98 16 18 C -0.10 -1.80 2.23 -91.77 -0.20 -2.01 16 19 H 0.14 2.93 4.31 -51.93 -0.22 2.71 16 20 C -0.14 -2.32 8.38 37.16 0.31 -2.01 16 21 C -0.07 -1.20 4.78 -104.62 -0.50 -1.70 16 22 C -0.10 -1.60 8.45 -39.58 -0.33 -1.93 16 23 C -0.13 -1.91 9.70 -39.58 -0.38 -2.29 16 24 C -0.10 -1.43 5.88 -104.62 -0.62 -2.05 16 25 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 26 C -0.13 -2.00 9.70 -39.58 -0.38 -2.38 16 27 C -0.10 -1.74 9.67 -39.58 -0.38 -2.13 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.34 7.23 -51.93 -0.38 0.96 16 32 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 33 H 0.04 0.95 5.63 -51.93 -0.29 0.66 16 34 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.37 5.74 6.78 45.56 0.31 6.05 16 37 H 0.06 1.05 7.34 -51.93 -0.38 0.67 16 38 H 0.05 0.73 5.94 -51.93 -0.31 0.42 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.13 1.88 5.79 -52.49 -0.30 1.57 16 41 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 46 H 0.13 2.55 7.95 -52.49 -0.42 2.13 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -26.69 366.33 -8.77 -35.46 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -6.52 Total: 13.60 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.27 Total: -11.94 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.31 Total: -34.21 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.79 Total: -22.71 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.69 -8.77 -35.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344174779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.915 kcal (2) G-P(sol) polarization free energy of solvation -26.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds