Wall clock time and date at job start Tue Mar 31 2020 08:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47163 * 2 1 4 4 C 1.46498 * 120.00067 * 275.93303 * 3 2 1 5 5 C 1.50703 * 109.47279 * 270.00050 * 4 3 2 6 6 H 1.08003 * 119.99880 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00053 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99861 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47488 * 89.99188 * 9 7 5 11 11 H 1.48498 * 109.47356 * 209.99683 * 9 7 5 12 12 H 1.48507 * 109.47192 * 329.99750 * 9 7 5 13 13 C 1.34785 * 120.00446 * 95.93122 * 3 2 1 14 14 O 1.21278 * 120.00398 * 175.92539 * 13 3 2 15 15 C 1.50697 * 119.99363 * 355.92977 * 13 3 2 16 16 H 1.08998 * 109.47337 * 337.15288 * 15 13 3 17 17 O 1.42906 * 109.46720 * 217.15741 * 15 13 3 18 18 C 1.52998 * 109.47638 * 97.15520 * 15 13 3 19 19 H 1.09002 * 109.46747 * 64.32792 * 18 15 13 20 20 C 1.52999 * 109.46765 * 304.33281 * 18 15 13 21 21 C 1.50698 * 109.47285 * 184.32651 * 18 15 13 22 22 C 1.38234 * 119.99607 * 59.73210 * 21 18 15 23 23 C 1.38237 * 119.99556 * 179.76487 * 22 21 18 24 24 C 1.38234 * 119.99980 * 0.47943 * 23 22 21 25 25 C 1.50709 * 120.00218 * 179.77073 * 24 23 22 26 26 C 1.38235 * 120.00378 * 359.79668 * 24 23 22 27 27 C 1.38234 * 120.00070 * 239.99781 * 21 18 15 28 28 H 1.08997 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47124 * 300.00065 * 1 2 3 30 30 H 1.08997 * 109.47199 * 59.99977 * 1 2 3 31 31 H 1.08999 * 109.47106 * 239.99439 * 2 1 3 32 32 H 1.09005 * 109.46936 * 120.00069 * 2 1 3 33 33 H 1.08999 * 109.47150 * 30.00012 * 4 3 2 34 34 H 1.09003 * 109.47609 * 149.99828 * 4 3 2 35 35 H 0.97002 * 119.99861 * 180.02562 * 8 7 5 36 36 H 0.96698 * 113.99954 * 299.99824 * 17 15 13 37 37 H 1.08995 * 109.46832 * 293.76167 * 20 18 15 38 38 H 1.08992 * 109.47367 * 53.76858 * 20 18 15 39 39 H 1.09004 * 109.46570 * 173.77084 * 20 18 15 40 40 H 1.07993 * 120.00610 * 359.97438 * 22 21 18 41 41 H 1.08002 * 120.00318 * 180.25032 * 23 22 21 42 42 H 1.09001 * 109.46695 * 270.02647 * 25 24 23 43 43 H 1.08997 * 109.46959 * 30.01801 * 25 24 23 44 44 H 1.09000 * 109.47196 * 150.02698 * 25 24 23 45 45 H 1.07999 * 120.00793 * 179.97438 * 26 24 23 46 46 H 1.08009 * 119.99892 * 0.02562 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1389 2.1155 -1.2619 5 6 3.5126 1.8962 -1.8415 6 1 4.2248 1.2726 -1.3216 7 6 3.8605 2.4926 -3.0349 8 7 2.9935 3.2524 -3.6678 9 14 5.5630 2.2202 -3.7537 10 1 5.5412 1.0295 -4.6409 11 1 5.9661 3.4148 -4.5383 12 1 6.5355 1.9996 -2.6532 13 6 2.3567 1.9764 1.1610 14 8 2.8303 3.0929 1.1546 15 6 2.1466 1.2545 2.4670 16 1 1.3788 0.4912 2.3408 17 8 1.7305 2.1881 3.4657 18 6 3.4564 0.5934 2.9009 19 1 4.2024 1.3624 3.1014 20 6 3.9581 -0.3252 1.7849 21 6 3.2209 -0.2159 4.1501 22 6 2.3058 -1.2520 4.1401 23 6 2.0933 -1.9975 5.2846 24 6 2.7886 -1.7006 6.4419 25 6 2.5532 -2.5100 7.6912 26 6 3.6995 -0.6608 6.4535 27 6 3.9159 0.0813 5.3075 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3866 1.7566 -1.9644 34 1 1.9872 3.1793 -1.0792 35 1 3.2382 3.6716 -4.5076 36 1 2.3670 2.8972 3.6307 37 1 3.2649 -1.1571 1.6600 38 1 4.0229 0.2368 0.8533 39 1 4.9438 -0.7099 2.0467 40 1 1.7594 -1.4812 3.2372 41 1 1.3814 -2.8096 5.2758 42 1 1.7513 -2.0554 8.2728 43 1 2.2720 -3.5269 7.4176 44 1 3.4659 -2.5330 8.2866 45 1 4.2425 -0.4285 7.3577 46 1 4.6274 0.8938 5.3165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344174781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:59 Heat of formation + Delta-G solvation = -73.182961 kcal Electronic energy + Delta-G solvation = -25929.038910 eV Core-core repulsion = 22397.171879 eV Total energy + Delta-G solvation = -3531.867031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -40.33099 -39.10444 -36.54566 -35.51355 -34.28974 -32.81289 -31.47043 -30.93872 -30.12033 -27.88802 -26.75350 -26.00738 -23.47990 -22.89566 -22.77473 -21.86914 -20.25886 -18.82462 -17.26915 -16.64987 -16.44350 -16.04778 -15.58273 -15.33027 -14.80246 -14.54204 -14.09107 -13.95074 -13.89264 -13.64268 -13.45529 -13.31418 -13.14128 -12.70550 -12.46742 -12.30787 -12.22475 -11.96855 -11.96283 -11.73555 -11.51896 -11.27276 -11.18003 -10.96240 -10.93424 -10.85481 -10.66969 -10.57487 -10.18764 -10.09310 -9.65662 -8.95764 -8.82216 -8.46006 -8.42975 -7.70446 -6.06071 -4.10822 1.28513 1.37177 3.21907 3.28385 3.35476 3.39454 3.69835 3.84150 4.41674 4.49109 4.63328 4.71272 4.81592 4.92552 4.94805 5.03919 5.17402 5.23581 5.28792 5.29505 5.39207 5.41134 5.46058 5.57658 5.60379 5.64270 5.64491 5.74637 5.90222 5.98420 6.02533 6.05556 6.11883 6.22301 6.32769 6.42652 6.49676 6.52139 6.63078 6.96973 7.02293 7.41263 7.50020 7.70753 7.89860 8.20905 8.35264 8.85197 9.00672 9.54105 11.02105 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.003615 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.620287 B = 7742.913706 C = 8029.088772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.483 3.517 14 O -0.538 6.538 15 C 0.096 3.904 16 H 0.114 0.886 17 O -0.542 6.542 18 C -0.076 4.076 19 H 0.088 0.912 20 C -0.158 4.158 21 C -0.062 4.062 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.112 4.112 26 C -0.119 4.119 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.381 0.619 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -12.506 17.978 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 N -0.322 5.322 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.268 3.732 14 O -0.416 6.416 15 C 0.034 3.966 16 H 0.131 0.869 17 O -0.347 6.347 18 C -0.095 4.095 19 H 0.106 0.894 20 C -0.215 4.215 21 C -0.062 4.062 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.097 4.097 25 C -0.169 4.169 26 C -0.137 4.137 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.388 -12.172 17.806 21.701 hybrid contribution 1.376 0.230 -0.659 1.543 sum -1.012 -11.943 17.147 20.921 Atomic orbital electron populations 1.22247 0.96668 1.01528 1.02662 1.21746 0.93876 0.84404 1.03040 1.48293 1.62432 1.13205 1.08283 1.19286 0.96956 0.92797 0.78343 1.21402 0.98830 1.30268 1.05811 0.92427 1.24931 0.97391 0.94919 0.96852 1.69931 1.34841 1.31801 1.16772 0.86517 0.84343 0.77637 0.79048 1.20642 1.21116 1.19884 1.21067 0.79003 0.87160 0.85921 1.90673 1.43955 1.19973 1.86990 1.22103 0.96851 0.91230 0.86457 0.86865 1.86538 1.49282 1.41576 1.57350 1.20767 0.97439 0.97821 0.93518 0.89402 1.22130 1.01311 0.99403 0.98608 1.19661 0.96318 0.95742 0.94508 1.20947 0.97989 0.95515 0.98270 1.20963 0.99887 1.00106 0.92626 1.19873 0.97216 0.97005 0.95586 1.20766 1.02072 0.99065 0.94999 1.20965 0.98730 0.95929 0.98075 1.21034 0.99730 0.99576 0.92412 0.92086 0.92870 0.91815 0.89839 0.90875 0.94914 0.94047 0.92716 0.77007 0.91835 0.90080 0.91996 0.86184 0.86255 0.91363 0.91729 0.91781 0.86352 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.10 37.16 0.38 -1.98 16 2 C 0.09 1.45 4.92 -4.04 -0.02 1.43 16 3 N -0.59 -12.12 2.00 -175.06 -0.35 -12.47 16 4 C 0.25 6.31 5.15 -5.19 -0.03 6.29 16 5 C -0.52 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.48 9.89 5.61 -10.98 -0.06 9.83 16 14 O -0.54 -13.35 16.16 -10.88 -0.18 -13.53 16 15 C 0.10 1.51 2.39 -27.89 -0.07 1.44 16 16 H 0.11 1.62 4.89 -51.93 -0.25 1.36 16 17 O -0.54 -8.67 13.00 -51.67 -0.67 -9.34 16 18 C -0.08 -1.05 2.35 -91.77 -0.22 -1.26 16 19 H 0.09 1.26 7.88 -51.93 -0.41 0.85 16 20 C -0.16 -2.16 7.66 37.16 0.28 -1.88 16 21 C -0.06 -0.77 4.54 -104.63 -0.47 -1.24 16 22 C -0.11 -1.25 8.59 -39.58 -0.34 -1.59 16 23 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 24 C -0.10 -0.97 5.88 -104.62 -0.62 -1.59 16 25 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 26 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 27 C -0.11 -1.26 9.67 -39.58 -0.38 -1.65 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.72 7.74 -51.93 -0.40 0.32 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 32 H 0.07 0.95 3.32 -51.93 -0.17 0.78 16 33 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.38 5.46 8.66 45.56 0.39 5.85 16 37 H 0.06 0.75 5.54 -51.93 -0.29 0.46 16 38 H 0.08 1.38 6.07 -51.93 -0.32 1.07 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.12 1.22 7.04 -52.49 -0.37 0.85 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.24 7.95 -52.48 -0.42 0.83 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -33.09 370.17 -8.66 -41.75 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.38 Total: 6.19 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.37 Total: -9.11 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.39 Total: -38.16 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.85 Total: -22.87 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.09 -8.66 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344174781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.431 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds