Wall clock time and date at job start Tue Mar 31 2020 08:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47163 * 2 1 4 4 C 1.46498 * 120.00067 * 275.93303 * 3 2 1 5 5 C 1.50703 * 109.47279 * 270.00050 * 4 3 2 6 6 H 1.08003 * 119.99880 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00053 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99861 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47488 * 89.99188 * 9 7 5 11 11 H 1.48498 * 109.47356 * 209.99683 * 9 7 5 12 12 H 1.48507 * 109.47192 * 329.99750 * 9 7 5 13 13 C 1.34785 * 120.00446 * 95.93122 * 3 2 1 14 14 O 1.21278 * 120.00398 * 175.92539 * 13 3 2 15 15 C 1.50697 * 119.99363 * 355.92977 * 13 3 2 16 16 H 1.08998 * 109.47337 * 337.15288 * 15 13 3 17 17 O 1.42906 * 109.46720 * 217.15741 * 15 13 3 18 18 C 1.52998 * 109.47638 * 97.15520 * 15 13 3 19 19 H 1.09002 * 109.46747 * 64.32792 * 18 15 13 20 20 C 1.52999 * 109.46765 * 304.33281 * 18 15 13 21 21 C 1.50698 * 109.47285 * 184.32651 * 18 15 13 22 22 C 1.38234 * 119.99607 * 59.73210 * 21 18 15 23 23 C 1.38237 * 119.99556 * 179.76487 * 22 21 18 24 24 C 1.38234 * 119.99980 * 0.47943 * 23 22 21 25 25 C 1.50709 * 120.00218 * 179.77073 * 24 23 22 26 26 C 1.38235 * 120.00378 * 359.79668 * 24 23 22 27 27 C 1.38234 * 120.00070 * 239.99781 * 21 18 15 28 28 H 1.08997 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47124 * 300.00065 * 1 2 3 30 30 H 1.08997 * 109.47199 * 59.99977 * 1 2 3 31 31 H 1.08999 * 109.47106 * 239.99439 * 2 1 3 32 32 H 1.09005 * 109.46936 * 120.00069 * 2 1 3 33 33 H 1.08999 * 109.47150 * 30.00012 * 4 3 2 34 34 H 1.09003 * 109.47609 * 149.99828 * 4 3 2 35 35 H 0.97002 * 119.99861 * 180.02562 * 8 7 5 36 36 H 0.96698 * 113.99954 * 299.99824 * 17 15 13 37 37 H 1.08995 * 109.46832 * 293.76167 * 20 18 15 38 38 H 1.08992 * 109.47367 * 53.76858 * 20 18 15 39 39 H 1.09004 * 109.46570 * 173.77084 * 20 18 15 40 40 H 1.07993 * 120.00610 * 359.97438 * 22 21 18 41 41 H 1.08002 * 120.00318 * 180.25032 * 23 22 21 42 42 H 1.09001 * 109.46695 * 270.02647 * 25 24 23 43 43 H 1.08997 * 109.46959 * 30.01801 * 25 24 23 44 44 H 1.09000 * 109.47196 * 150.02698 * 25 24 23 45 45 H 1.07999 * 120.00793 * 179.97438 * 26 24 23 46 46 H 1.08009 * 119.99892 * 0.02562 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1389 2.1155 -1.2619 5 6 3.5126 1.8962 -1.8415 6 1 4.2248 1.2726 -1.3216 7 6 3.8605 2.4926 -3.0349 8 7 2.9935 3.2524 -3.6678 9 14 5.5630 2.2202 -3.7537 10 1 5.5412 1.0295 -4.6409 11 1 5.9661 3.4148 -4.5383 12 1 6.5355 1.9996 -2.6532 13 6 2.3567 1.9764 1.1610 14 8 2.8303 3.0929 1.1546 15 6 2.1466 1.2545 2.4670 16 1 1.3788 0.4912 2.3408 17 8 1.7305 2.1881 3.4657 18 6 3.4564 0.5934 2.9009 19 1 4.2024 1.3624 3.1014 20 6 3.9581 -0.3252 1.7849 21 6 3.2209 -0.2159 4.1501 22 6 2.3058 -1.2520 4.1401 23 6 2.0933 -1.9975 5.2846 24 6 2.7886 -1.7006 6.4419 25 6 2.5532 -2.5100 7.6912 26 6 3.6995 -0.6608 6.4535 27 6 3.9159 0.0813 5.3075 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3866 1.7566 -1.9644 34 1 1.9872 3.1793 -1.0792 35 1 3.2382 3.6716 -4.5076 36 1 2.3670 2.8972 3.6307 37 1 3.2649 -1.1571 1.6600 38 1 4.0229 0.2368 0.8533 39 1 4.9438 -0.7099 2.0467 40 1 1.7594 -1.4812 3.2372 41 1 1.3814 -2.8096 5.2758 42 1 1.7513 -2.0554 8.2728 43 1 2.2720 -3.5269 7.4176 44 1 3.4659 -2.5330 8.2866 45 1 4.2425 -0.4285 7.3577 46 1 4.6274 0.8938 5.3165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344174781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:53 Heat of formation + Delta-G solvation = -93.130080 kcal Electronic energy + Delta-G solvation = -25929.903882 eV Core-core repulsion = 22397.171879 eV Total energy + Delta-G solvation = -3532.732003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.64362 -40.18429 -37.88615 -37.11462 -35.43366 -34.84697 -32.39005 -31.72657 -31.62282 -29.59856 -27.61749 -27.52014 -25.11872 -24.09415 -23.84986 -23.03067 -21.22098 -20.32282 -18.77103 -18.53672 -17.94769 -17.27399 -16.91605 -16.39363 -16.20880 -15.66876 -15.56748 -15.28975 -15.10817 -14.70169 -14.49092 -14.42046 -14.21400 -14.08557 -13.78469 -13.64123 -13.34297 -13.24410 -13.11048 -12.97940 -12.89633 -12.66437 -12.61192 -12.55236 -12.31699 -12.17718 -11.92050 -11.80636 -11.75502 -11.71158 -11.32324 -10.64625 -10.39670 -9.74678 -9.48864 -9.30073 -8.22693 -6.36911 0.46209 0.57786 1.35719 1.38655 1.48595 1.65058 2.21197 2.40725 2.88805 3.07238 3.26160 3.47723 3.65055 3.79049 3.99465 4.06823 4.10297 4.16113 4.21271 4.33568 4.37802 4.42940 4.53341 4.61693 4.65698 4.80992 4.88550 4.89626 4.91740 4.95473 4.99583 5.02425 5.06548 5.17460 5.23671 5.26766 5.35283 5.37740 5.56323 5.58961 5.76441 5.77630 5.81795 6.05342 6.19452 6.45174 6.66953 6.74790 7.24133 7.39092 8.84745 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.003615 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.620287 B = 7742.913706 C = 8029.088772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.592 5.592 4 C 0.261 3.739 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.475 3.525 14 O -0.593 6.593 15 C 0.114 3.886 16 H 0.135 0.865 17 O -0.547 6.547 18 C -0.066 4.066 19 H 0.075 0.925 20 C -0.154 4.154 21 C -0.077 4.077 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.024 0.976 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.387 0.613 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.136 0.864 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -15.490 19.685 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 N -0.323 5.323 4 C 0.140 3.860 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.263 3.737 14 O -0.475 6.475 15 C 0.051 3.949 16 H 0.152 0.848 17 O -0.353 6.353 18 C -0.086 4.086 19 H 0.093 0.907 20 C -0.211 4.211 21 C -0.077 4.077 22 C -0.136 4.136 23 C -0.141 4.141 24 C -0.100 4.100 25 C -0.168 4.168 26 C -0.145 4.145 27 C -0.141 4.141 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.042 0.958 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.154 0.846 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.275 -15.205 19.532 24.857 hybrid contribution 1.297 1.150 -1.113 2.060 sum -0.978 -14.055 18.419 23.189 Atomic orbital electron populations 1.22209 0.94740 1.03840 1.01695 1.22075 0.95422 0.81601 1.04399 1.48282 1.62401 1.14894 1.06706 1.18732 0.96097 0.90725 0.80481 1.21678 0.99568 1.30232 1.06075 0.92515 1.25851 1.01520 0.94497 0.97308 1.70056 1.36961 1.32695 1.17265 0.85438 0.79127 0.78086 0.78310 1.18759 1.20871 1.19659 1.22060 0.77550 0.86703 0.87391 1.90633 1.46360 1.22545 1.87934 1.22077 0.98668 0.90780 0.83368 0.84792 1.86512 1.49864 1.41988 1.56917 1.20616 0.95746 0.97657 0.94535 0.90684 1.22085 1.02731 0.99529 0.96727 1.19505 0.97871 0.96533 0.93798 1.21160 0.97809 0.95282 0.99362 1.21277 1.00155 1.00444 0.92271 1.20273 0.96362 0.96734 0.96625 1.20820 1.02836 0.99251 0.93909 1.21233 0.99053 0.95910 0.98306 1.21194 1.00006 1.00078 0.92775 0.88065 0.92626 0.94022 0.90256 0.87717 0.95814 0.98916 0.92475 0.76331 0.89489 0.93670 0.90964 0.84899 0.84045 0.90646 0.90569 0.90877 0.84628 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 10.10 71.98 0.73 -3.53 16 2 C 0.09 2.62 4.92 86.38 0.42 3.05 16 3 N -0.59 -24.99 2.00 -826.16 -1.65 -26.64 16 4 C 0.26 14.15 5.15 85.63 0.44 14.59 16 5 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 6 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 7 C 0.01 0.40 5.46 84.66 0.46 0.87 16 8 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 9 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.47 20.04 5.61 87.65 0.49 20.53 16 14 O -0.59 -31.07 16.16 12.70 0.21 -30.86 16 15 C 0.11 3.49 2.39 29.85 0.07 3.56 16 16 H 0.13 3.52 4.89 -2.39 -0.01 3.51 16 17 O -0.55 -17.28 13.00 -133.26 -1.73 -19.01 16 18 C -0.07 -1.77 2.35 -11.54 -0.03 -1.80 16 19 H 0.07 2.18 7.88 -2.39 -0.02 2.16 16 20 C -0.15 -4.04 7.66 71.98 0.55 -3.48 16 21 C -0.08 -1.76 4.54 -19.87 -0.09 -1.85 16 22 C -0.12 -2.35 8.59 22.27 0.19 -2.16 16 23 C -0.12 -2.14 9.70 22.27 0.22 -1.93 16 24 C -0.10 -1.70 5.88 -19.86 -0.12 -1.82 16 25 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16 26 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 27 C -0.12 -2.65 9.67 22.27 0.22 -2.43 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.40 7.74 -2.39 -0.02 1.38 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16 32 H 0.11 2.47 3.32 -2.38 -0.01 2.46 16 33 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 34 H -0.01 -0.46 7.48 -2.39 -0.02 -0.48 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.39 11.30 8.66 -74.06 -0.64 10.66 16 37 H 0.09 1.81 5.54 -2.39 -0.01 1.80 16 38 H 0.04 1.53 6.07 -2.39 -0.01 1.51 16 39 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.13 2.18 7.04 -2.91 -0.02 2.16 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 44 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.12 2.46 7.95 -2.91 -0.02 2.44 16 Total: -1.00 -75.00 370.17 4.20 -70.80 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.34 Total: 24.69 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 4.73 Total: -9.61 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.37 Total: -82.93 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -1.53 Total: -49.87 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -75.00 4.20 -70.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344174781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.330 kcal (2) G-P(sol) polarization free energy of solvation -74.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds