Wall clock time and date at job start Tue Mar 31 2020 08:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47066 * 2 1 4 4 C 1.46502 * 120.00032 * 275.61397 * 3 2 1 5 5 C 1.50696 * 109.47453 * 270.00706 * 4 3 2 6 6 H 1.07998 * 119.99942 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99895 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00186 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47319 * 90.00401 * 9 7 5 11 11 H 1.48507 * 109.47321 * 210.00146 * 9 7 5 12 12 H 1.48502 * 109.47511 * 330.00208 * 9 7 5 13 13 C 1.34768 * 120.00060 * 95.62036 * 3 2 1 14 14 O 1.21285 * 120.00077 * 174.49398 * 13 3 2 15 15 C 1.50706 * 120.00083 * 354.49947 * 13 3 2 16 16 H 1.09001 * 109.46970 * 3.56260 * 15 13 3 17 17 O 1.42895 * 109.47275 * 123.56856 * 15 13 3 18 18 C 1.53002 * 109.46775 * 243.56986 * 15 13 3 19 19 H 1.09004 * 109.47003 * 306.36877 * 18 15 13 20 20 C 1.53002 * 109.47326 * 66.36969 * 18 15 13 21 21 C 1.50702 * 109.47112 * 186.36725 * 18 15 13 22 22 C 1.38237 * 119.99748 * 119.99599 * 21 18 15 23 23 C 1.38232 * 119.99551 * 180.02562 * 22 21 18 24 24 C 1.38235 * 120.00489 * 0.02562 * 23 22 21 25 25 C 1.50697 * 119.99891 * 179.70074 * 24 23 22 26 26 C 1.38233 * 119.99422 * 359.97173 * 24 23 22 27 27 C 1.38232 * 120.00703 * 0.05210 * 26 24 23 28 28 H 1.09007 * 109.47275 * 65.91491 * 1 2 3 29 29 H 1.09003 * 109.47245 * 185.91737 * 1 2 3 30 30 H 1.09002 * 109.47208 * 305.92091 * 1 2 3 31 31 H 1.09005 * 109.46767 * 239.99877 * 2 1 3 32 32 H 1.09001 * 109.47444 * 119.99943 * 2 1 3 33 33 H 1.09008 * 109.46799 * 30.00337 * 4 3 2 34 34 H 1.09002 * 109.47127 * 149.99818 * 4 3 2 35 35 H 0.97000 * 120.00062 * 179.97438 * 8 7 5 36 36 H 0.96704 * 114.00223 * 59.99933 * 17 15 13 37 37 H 1.09001 * 109.47295 * 177.65053 * 20 18 15 38 38 H 1.09007 * 109.46636 * 297.64725 * 20 18 15 39 39 H 1.08992 * 109.47066 * 57.64425 * 20 18 15 40 40 H 1.07997 * 120.00150 * 0.02562 * 22 21 18 41 41 H 1.08010 * 119.99803 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.47276 * 90.00153 * 25 24 23 43 43 H 1.09003 * 109.46726 * 209.99467 * 25 24 23 44 44 H 1.08999 * 109.47586 * 329.99578 * 25 24 23 45 45 H 1.08002 * 119.99375 * 179.97438 * 26 24 23 46 46 H 1.07995 * 120.00246 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1454 2.1132 -1.2627 5 6 3.5221 1.8928 -1.8347 6 1 4.2315 1.2701 -1.3100 7 6 3.8759 2.4861 -3.0280 8 7 3.0121 3.2448 -3.6667 9 14 5.5825 2.2135 -3.7367 10 1 5.5666 1.0204 -4.6208 11 1 5.9886 3.4064 -4.5226 12 1 6.5492 1.9970 -2.6305 13 6 2.3507 1.9784 1.1615 14 8 2.8483 3.0845 1.1541 15 6 2.1041 1.2719 2.4697 16 1 1.7138 0.2730 2.2751 17 8 3.3310 1.1712 3.1953 18 6 1.0878 2.0649 3.2938 19 1 1.4255 3.0966 3.3922 20 6 -0.2710 2.0380 2.5910 21 6 0.9580 1.4461 4.6618 22 6 1.2556 2.1903 5.7881 23 6 1.1371 1.6225 7.0428 24 6 0.7214 0.3103 7.1713 25 6 0.5987 -0.3106 8.5389 26 6 0.4238 -0.4337 6.0450 27 6 0.5428 0.1338 4.7902 28 1 -0.3634 0.4194 -0.9382 29 1 -0.3634 -1.0222 0.1059 30 1 -0.3634 0.6029 0.8322 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3968 1.7530 -1.9684 34 1 1.9928 3.1774 -1.0827 35 1 3.2611 3.6625 -4.5060 36 1 3.7360 2.0242 3.4036 37 1 -1.0050 2.5674 3.1986 38 1 -0.1866 2.5231 1.6184 39 1 -0.5893 1.0045 2.4551 40 1 1.5807 3.2153 5.6877 41 1 1.3700 2.2038 7.9228 42 1 -0.4076 -0.1456 8.9239 43 1 0.7903 -1.3815 8.4701 44 1 1.3247 0.1459 9.2117 45 1 0.0995 -1.4590 6.1454 46 1 0.3106 -0.4477 3.9102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344174782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:05 Heat of formation + Delta-G solvation = -92.407941 kcal Electronic energy + Delta-G solvation = -25758.667916 eV Core-core repulsion = 22225.967227 eV Total energy + Delta-G solvation = -3532.700689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55641 -40.19144 -37.90849 -37.02716 -35.44459 -34.89382 -32.43053 -31.72517 -31.55561 -29.73365 -27.56710 -27.52394 -24.96411 -24.39573 -23.76795 -22.92402 -21.17816 -20.37047 -18.90695 -18.48528 -17.91341 -17.10986 -16.89338 -16.39795 -16.08220 -15.93864 -15.67985 -15.35220 -15.08654 -14.65305 -14.55359 -14.42442 -14.19850 -14.05355 -13.71030 -13.68013 -13.34793 -13.25535 -13.13712 -13.02683 -12.92647 -12.66778 -12.61042 -12.55844 -12.30148 -12.06309 -11.88974 -11.79719 -11.73268 -11.67503 -11.33581 -10.66437 -10.36752 -9.74168 -9.50551 -9.30577 -8.25125 -6.39448 0.47256 0.58456 1.33889 1.36823 1.47207 1.63634 2.21046 2.39436 2.90048 3.04314 3.28237 3.48670 3.62639 3.83244 3.96671 4.06572 4.15881 4.15996 4.22072 4.35234 4.39320 4.40711 4.57480 4.64907 4.70596 4.79804 4.87463 4.89355 4.92394 4.97436 4.99851 5.03067 5.06226 5.14189 5.20235 5.27100 5.35270 5.45298 5.54341 5.58778 5.77591 5.78123 5.80748 6.03985 6.20129 6.44619 6.64565 6.72911 7.22674 7.37817 8.81921 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003300 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.694891 B = 8482.683740 C = 8782.154196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.474 3.526 14 O -0.592 6.592 15 C 0.111 3.889 16 H 0.136 0.864 17 O -0.547 6.547 18 C -0.067 4.067 19 H 0.072 0.928 20 C -0.145 4.145 21 C -0.075 4.075 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.114 4.114 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.026 0.974 34 H -0.003 1.003 35 H 0.268 0.732 36 H 0.386 0.614 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.141 0.859 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 -10.137 21.351 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.201 1.201 13 C 0.262 3.738 14 O -0.474 6.474 15 C 0.049 3.951 16 H 0.154 0.846 17 O -0.352 6.352 18 C -0.086 4.086 19 H 0.090 0.910 20 C -0.202 4.202 21 C -0.075 4.075 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.100 4.100 25 C -0.168 4.168 26 C -0.142 4.142 27 C -0.132 4.132 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.044 0.956 34 H 0.015 0.985 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.158 0.842 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.084 -10.116 21.121 25.119 hybrid contribution 1.141 1.209 -1.091 1.988 sum -7.943 -8.907 20.030 23.316 Atomic orbital electron populations 1.22452 0.93972 1.04236 1.02731 1.21859 0.96000 0.81396 1.03683 1.48329 1.62371 1.14910 1.06786 1.18720 0.95778 0.90885 0.80492 1.21681 0.99746 1.30519 1.06258 0.93363 1.25826 1.01619 0.94422 0.97127 1.70039 1.36914 1.32592 1.17116 0.85443 0.79064 0.78264 0.78217 1.18702 1.20417 1.20067 1.22072 0.77933 0.86365 0.87409 1.90638 1.45573 1.23025 1.88156 1.22188 0.85936 1.00970 0.86007 0.84640 1.86534 1.37655 1.35864 1.75173 1.20611 0.96185 0.99127 0.92701 0.90998 1.21977 0.95043 1.03697 0.99470 1.19486 1.00032 0.94899 0.93094 1.21193 1.00352 1.00133 0.92573 1.21218 1.00586 0.95402 0.97326 1.20262 0.98719 0.94250 0.96803 1.20816 1.02916 1.01072 0.92000 1.21273 1.00571 1.00663 0.91743 1.21142 0.99361 0.94290 0.98413 0.93802 0.88244 0.90889 0.90903 0.88503 0.95592 0.98503 0.92343 0.76510 0.90617 0.94049 0.89453 0.86090 0.84721 0.90368 0.90745 0.91039 0.84161 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 10.23 71.98 0.74 -3.52 16 2 C 0.09 2.88 5.80 86.38 0.50 3.38 16 3 N -0.59 -25.39 2.46 -826.14 -2.03 -27.42 16 4 C 0.26 14.32 5.14 85.63 0.44 14.76 16 5 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.53 5.46 84.65 0.46 1.00 16 8 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 9 Si 0.97 45.84 29.54 68.60 2.03 47.86 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.47 20.00 5.79 87.66 0.51 20.50 16 14 O -0.59 -30.88 16.40 4.92 0.08 -30.80 16 15 C 0.11 3.38 2.35 29.85 0.07 3.45 16 16 H 0.14 3.48 4.85 -2.39 -0.01 3.46 16 17 O -0.55 -17.31 12.77 -141.02 -1.80 -19.11 16 18 C -0.07 -1.75 2.29 -11.54 -0.03 -1.78 16 19 H 0.07 2.14 7.74 -2.38 -0.02 2.12 16 20 C -0.15 -3.40 7.50 71.98 0.54 -2.86 16 21 C -0.08 -1.71 4.26 -19.86 -0.08 -1.79 16 22 C -0.12 -2.71 9.67 22.27 0.22 -2.50 16 23 C -0.13 -2.39 9.70 22.27 0.22 -2.18 16 24 C -0.10 -1.73 5.88 -19.87 -0.12 -1.84 16 25 C -0.11 -1.26 10.01 71.23 0.71 -0.55 16 26 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 27 C -0.11 -2.27 8.80 22.27 0.20 -2.07 16 28 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.64 4.17 -2.39 -0.01 1.63 16 31 H 0.07 2.42 8.11 -2.38 -0.02 2.40 16 32 H 0.10 2.46 5.81 -2.39 -0.01 2.45 16 33 H 0.03 1.43 8.07 -2.38 -0.02 1.41 16 34 H 0.00 -0.20 7.50 -2.39 -0.02 -0.21 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.39 11.41 8.90 -74.05 -0.66 10.75 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.19 7.16 -2.38 -0.02 1.17 16 39 H 0.09 1.63 5.72 -2.39 -0.01 1.62 16 40 H 0.12 2.49 7.95 -2.91 -0.02 2.47 16 41 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 44 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.13 2.18 7.21 -2.91 -0.02 2.16 16 Total: -1.00 -75.75 371.93 3.71 -72.04 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.32 Total: 23.53 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 4.83 Total: -9.83 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.74 Total: -83.69 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.72 Total: -49.91 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.75 3.71 -72.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344174782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.369 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds