Wall clock time and date at job start Tue Mar 31 2020 08:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46877 * 2 1 4 4 C 1.46506 * 120.00283 * 270.00009 * 3 2 1 5 5 C 1.52999 * 109.47029 * 270.00555 * 4 3 2 6 6 O 1.42899 * 109.47565 * 64.99398 * 5 4 3 7 7 C 1.42898 * 114.00148 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00010 * 90.00438 * 3 2 1 9 9 O 1.21284 * 120.00085 * 180.02562 * 8 3 2 10 10 C 1.50706 * 119.99984 * 359.97438 * 8 3 2 11 11 C 1.52994 * 109.46995 * 180.02562 * 10 8 3 12 12 H 1.08997 * 109.47639 * 54.05331 * 11 10 8 13 13 C 1.50698 * 109.46998 * 294.05407 * 11 10 8 14 14 H 1.08002 * 120.00397 * 330.08382 * 13 11 10 15 15 C 1.37877 * 119.99983 * 150.08385 * 13 11 10 16 16 N 1.31513 * 120.00147 * 6.55933 * 15 13 11 17 17 Si 1.86806 * 120.00054 * 186.55449 * 15 13 11 18 18 H 1.48505 * 109.47142 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47340 * 300.00345 * 17 15 13 20 20 H 1.48505 * 109.46728 * 60.00313 * 17 15 13 21 21 C 1.50704 * 109.47072 * 174.05777 * 11 10 8 22 22 C 1.38232 * 120.00156 * 64.29986 * 21 11 10 23 23 C 1.38227 * 120.00423 * 179.81276 * 22 21 11 24 24 C 1.38238 * 119.99674 * 0.39266 * 23 22 21 25 25 C 1.38237 * 119.99909 * 359.86442 * 24 23 22 26 26 C 1.38229 * 119.99861 * 359.94762 * 25 24 23 27 27 H 1.09008 * 109.47339 * 59.99937 * 1 2 3 28 28 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47538 * 299.99944 * 1 2 3 30 30 H 1.08999 * 109.46777 * 240.00583 * 2 1 3 31 31 H 1.08993 * 109.46874 * 120.00081 * 2 1 3 32 32 H 1.09004 * 109.46669 * 29.99915 * 4 3 2 33 33 H 1.08996 * 109.47063 * 149.99789 * 4 3 2 34 34 H 1.08999 * 109.47063 * 185.00177 * 5 4 3 35 35 H 1.09004 * 109.47017 * 304.99511 * 5 4 3 36 36 H 1.09001 * 109.46923 * 60.00790 * 7 6 5 37 37 H 1.09002 * 109.47165 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47250 * 300.00130 * 7 6 5 39 39 H 1.08997 * 109.46866 * 60.00030 * 10 8 3 40 40 H 1.09004 * 109.46662 * 299.99914 * 10 8 3 41 41 H 0.96997 * 120.00185 * 354.72930 * 16 15 13 42 42 H 1.08007 * 119.99790 * 359.97438 * 22 21 11 43 43 H 1.08004 * 120.00499 * 180.23296 * 23 22 21 44 44 H 1.08006 * 119.99774 * 179.83158 * 24 23 22 45 45 H 1.07995 * 119.99599 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7105 6 8 3.8943 0.4433 -1.9936 7 6 5.2175 0.1096 -2.4176 8 6 2.2430 2.0165 1.1672 9 8 2.6467 3.1602 1.1672 10 6 1.9914 1.3063 2.4723 11 6 2.3223 2.2438 3.6352 12 1 1.7695 3.1760 3.5191 13 6 3.8011 2.5341 3.6411 14 1 4.4975 1.7979 3.2677 15 6 4.2650 3.7396 4.1232 16 7 3.4336 4.5827 4.6956 17 14 6.0745 4.1754 3.9635 18 1 6.3150 5.5157 4.5562 19 1 6.8924 3.1639 4.6798 20 1 6.4545 4.1930 2.5280 21 6 1.9340 1.5880 4.9353 22 6 2.5727 0.4324 5.3444 23 6 2.2192 -0.1670 6.5387 24 6 1.2213 0.3848 7.3202 25 6 0.5789 1.5375 6.9085 26 6 0.9351 2.1390 5.7160 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.9156 2.4163 -2.6064 35 1 4.3862 2.1343 -0.9131 36 1 5.9279 0.3767 -1.6352 37 1 5.2773 -0.9611 -2.6129 38 1 5.4566 0.6587 -3.3283 39 1 2.6212 0.4186 2.5301 40 1 0.9432 1.0125 2.5299 41 1 2.4828 4.3915 4.7107 42 1 3.3498 -0.0008 4.7320 43 1 2.7208 -1.0678 6.8602 44 1 0.9432 -0.0850 8.2521 45 1 -0.2010 1.9683 7.5189 46 1 0.4335 3.0398 5.3946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345481267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:07 Heat of formation + Delta-G solvation = -64.472577 kcal Electronic energy + Delta-G solvation = -25967.480087 eV Core-core repulsion = 22435.990767 eV Total energy + Delta-G solvation = -3531.489320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.55665 -38.41997 -37.60561 -35.44341 -34.25114 -31.69834 -31.06644 -30.09201 -29.32406 -28.37786 -26.31189 -25.02449 -23.20783 -23.10072 -22.16787 -21.60248 -19.93140 -18.38654 -16.92802 -16.63187 -16.41871 -16.09879 -15.64130 -15.27287 -15.13014 -14.44291 -14.14043 -14.04744 -13.66077 -13.62150 -13.25786 -12.93727 -12.68880 -12.52841 -12.30934 -12.12346 -11.98050 -11.87444 -11.78609 -11.52786 -11.43211 -11.18410 -10.94702 -10.73326 -10.68405 -10.40050 -10.11563 -10.03315 -9.66900 -9.59675 -8.93086 -8.60438 -8.26049 -8.19410 -8.12051 -7.61004 -6.21131 -3.88165 2.21040 2.27041 3.44348 3.46856 3.50083 3.55056 3.70695 3.84977 4.62124 4.68648 5.04948 5.13280 5.18990 5.25633 5.34735 5.38140 5.46047 5.48037 5.54406 5.59475 5.61249 5.65307 5.68977 5.78216 5.86373 5.90888 5.93536 6.01765 6.06528 6.15342 6.20387 6.27673 6.34461 6.46404 6.72104 6.80925 6.93637 7.00002 7.16212 7.22902 7.24719 7.40808 7.74808 7.87853 7.97178 8.25814 8.53136 8.99136 9.03940 9.80815 11.19205 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.005365 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.700351 B = 5218.240138 C = 6631.483916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 N -0.623 5.623 4 C 0.123 3.877 5 C 0.043 3.957 6 O -0.389 6.389 7 C 0.033 3.967 8 C 0.516 3.484 9 O -0.502 6.502 10 C -0.114 4.114 11 C 0.071 3.929 12 H 0.050 0.950 13 C -0.566 4.566 14 H 0.044 0.956 15 C 0.032 3.968 16 N -0.906 5.906 17 Si 1.062 2.938 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.290 1.290 21 C -0.029 4.029 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.130 4.130 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.270 0.730 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 -10.809 -9.795 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.359 5.359 4 C 0.000 4.000 5 C -0.034 4.034 6 O -0.308 6.308 7 C -0.064 4.064 8 C 0.305 3.695 9 O -0.374 6.374 10 C -0.154 4.154 11 C 0.052 3.948 12 H 0.068 0.932 13 C -0.603 4.603 14 H 0.062 0.938 15 C -0.173 4.173 16 N -0.542 5.542 17 Si 0.891 3.109 18 H -0.209 1.209 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.030 4.030 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.172 4.172 25 C -0.142 4.142 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.800 -9.123 -9.354 13.363 hybrid contribution -0.717 -1.087 -0.419 1.367 sum -3.517 -10.210 -9.773 14.564 Atomic orbital electron populations 1.22235 0.96742 1.01710 1.02248 1.21440 0.93431 0.82989 1.03298 1.48073 1.68177 1.14282 1.05414 1.21315 0.93855 0.98924 0.85909 1.23078 0.98902 0.82143 0.99306 1.87832 1.29729 1.25474 1.87775 1.22691 0.84609 1.00933 0.98169 1.20901 0.76695 0.87022 0.84904 1.90730 1.42375 1.17663 1.86654 1.21706 1.00288 1.00081 0.93303 1.17881 0.98549 0.93123 0.85220 0.93167 1.21512 0.89811 1.03227 1.45774 0.93794 1.25556 1.06059 0.92988 0.92739 1.70753 1.04889 1.39560 1.38955 0.83657 0.74919 0.76174 0.76125 1.20941 1.21790 1.21624 1.20822 0.90841 0.92503 0.98827 1.20910 0.99282 0.96271 0.96155 1.21005 0.98159 0.99952 0.95614 1.20819 0.98889 0.97646 0.99810 1.20959 1.00180 0.96318 0.96788 1.21061 0.98376 0.99966 0.95435 0.92777 0.91969 0.92367 0.90100 0.90638 0.90626 0.88689 0.93008 0.92296 0.94064 0.89975 0.94475 0.90418 0.91742 0.91876 0.86809 0.87480 0.87609 0.87491 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.11 1.43 5.75 -4.04 -0.02 1.41 16 3 N -0.62 -9.96 2.44 -173.68 -0.42 -10.38 16 4 C 0.12 1.75 5.81 -4.04 -0.02 1.72 16 5 C 0.04 0.60 6.28 37.16 0.23 0.84 16 6 O -0.39 -5.22 9.53 -35.23 -0.34 -5.56 16 7 C 0.03 0.35 11.01 101.05 1.11 1.46 16 8 C 0.52 10.58 7.43 -10.98 -0.08 10.50 16 9 O -0.50 -12.59 14.60 5.55 0.08 -12.51 16 10 C -0.11 -2.27 3.49 -27.88 -0.10 -2.37 16 11 C 0.07 1.73 1.31 -92.93 -0.12 1.61 16 12 H 0.05 1.37 6.23 -51.93 -0.32 1.05 16 13 C -0.57 -15.53 6.40 -34.44 -0.22 -15.75 16 14 H 0.04 1.22 7.82 -52.49 -0.41 0.81 16 15 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 16 N -0.91 -27.83 13.63 55.43 0.76 -27.07 16 17 Si 1.06 26.49 29.91 -169.99 -5.08 21.41 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C -0.03 -0.65 4.77 -104.62 -0.50 -1.15 16 22 C -0.11 -2.23 8.88 -39.59 -0.35 -2.58 16 23 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 24 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.12 -2.31 10.05 -39.59 -0.40 -2.70 16 26 C -0.13 -2.75 9.67 -39.59 -0.38 -3.13 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.72 7.22 -51.93 -0.37 0.34 16 30 H 0.08 0.97 7.11 -51.93 -0.37 0.60 16 31 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 32 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.09 1.45 7.42 -51.93 -0.39 1.06 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 1.48 7.13 -51.93 -0.37 1.11 16 40 H 0.06 1.14 7.18 -51.93 -0.37 0.77 16 41 H 0.27 8.21 6.68 -40.82 -0.27 7.94 16 42 H 0.11 2.30 7.80 -52.48 -0.41 1.89 16 43 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.11 2.29 7.95 -52.49 -0.42 1.88 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -33.37 376.28 -8.19 -41.55 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.48 Total: 3.57 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.37 Total: -16.67 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.33 Total: -37.46 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.25 Total: -18.07 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -5.08 Total: 21.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.37 -8.19 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345481267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.921 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds