Wall clock time and date at job start Tue Mar 31 2020 08:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46877 * 2 1 4 4 C 1.46506 * 120.00283 * 270.00009 * 3 2 1 5 5 C 1.52999 * 109.47029 * 270.00555 * 4 3 2 6 6 O 1.42899 * 109.47565 * 64.99398 * 5 4 3 7 7 C 1.42898 * 114.00148 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00010 * 90.00438 * 3 2 1 9 9 O 1.21284 * 120.00085 * 180.02562 * 8 3 2 10 10 C 1.50706 * 119.99984 * 359.97438 * 8 3 2 11 11 C 1.52994 * 109.46995 * 180.02562 * 10 8 3 12 12 H 1.08997 * 109.47639 * 54.05331 * 11 10 8 13 13 C 1.50698 * 109.46998 * 294.05407 * 11 10 8 14 14 H 1.08002 * 120.00397 * 330.08382 * 13 11 10 15 15 C 1.37877 * 119.99983 * 150.08385 * 13 11 10 16 16 N 1.31513 * 120.00147 * 6.55933 * 15 13 11 17 17 Si 1.86806 * 120.00054 * 186.55449 * 15 13 11 18 18 H 1.48505 * 109.47142 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47340 * 300.00345 * 17 15 13 20 20 H 1.48505 * 109.46728 * 60.00313 * 17 15 13 21 21 C 1.50704 * 109.47072 * 174.05777 * 11 10 8 22 22 C 1.38232 * 120.00156 * 64.29986 * 21 11 10 23 23 C 1.38227 * 120.00423 * 179.81276 * 22 21 11 24 24 C 1.38238 * 119.99674 * 0.39266 * 23 22 21 25 25 C 1.38237 * 119.99909 * 359.86442 * 24 23 22 26 26 C 1.38229 * 119.99861 * 359.94762 * 25 24 23 27 27 H 1.09008 * 109.47339 * 59.99937 * 1 2 3 28 28 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47538 * 299.99944 * 1 2 3 30 30 H 1.08999 * 109.46777 * 240.00583 * 2 1 3 31 31 H 1.08993 * 109.46874 * 120.00081 * 2 1 3 32 32 H 1.09004 * 109.46669 * 29.99915 * 4 3 2 33 33 H 1.08996 * 109.47063 * 149.99789 * 4 3 2 34 34 H 1.08999 * 109.47063 * 185.00177 * 5 4 3 35 35 H 1.09004 * 109.47017 * 304.99511 * 5 4 3 36 36 H 1.09001 * 109.46923 * 60.00790 * 7 6 5 37 37 H 1.09002 * 109.47165 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47250 * 300.00130 * 7 6 5 39 39 H 1.08997 * 109.46866 * 60.00030 * 10 8 3 40 40 H 1.09004 * 109.46662 * 299.99914 * 10 8 3 41 41 H 0.96997 * 120.00185 * 354.72930 * 16 15 13 42 42 H 1.08007 * 119.99790 * 359.97438 * 22 21 11 43 43 H 1.08004 * 120.00499 * 180.23296 * 23 22 21 44 44 H 1.08006 * 119.99774 * 179.83158 * 24 23 22 45 45 H 1.07995 * 119.99599 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7105 6 8 3.8943 0.4433 -1.9936 7 6 5.2175 0.1096 -2.4176 8 6 2.2430 2.0165 1.1672 9 8 2.6467 3.1602 1.1672 10 6 1.9914 1.3063 2.4723 11 6 2.3223 2.2438 3.6352 12 1 1.7695 3.1760 3.5191 13 6 3.8011 2.5341 3.6411 14 1 4.4975 1.7979 3.2677 15 6 4.2650 3.7396 4.1232 16 7 3.4336 4.5827 4.6956 17 14 6.0745 4.1754 3.9635 18 1 6.3150 5.5157 4.5562 19 1 6.8924 3.1639 4.6798 20 1 6.4545 4.1930 2.5280 21 6 1.9340 1.5880 4.9353 22 6 2.5727 0.4324 5.3444 23 6 2.2192 -0.1670 6.5387 24 6 1.2213 0.3848 7.3202 25 6 0.5789 1.5375 6.9085 26 6 0.9351 2.1390 5.7160 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.9156 2.4163 -2.6064 35 1 4.3862 2.1343 -0.9131 36 1 5.9279 0.3767 -1.6352 37 1 5.2773 -0.9611 -2.6129 38 1 5.4566 0.6587 -3.3283 39 1 2.6212 0.4186 2.5301 40 1 0.9432 1.0125 2.5299 41 1 2.4828 4.3915 4.7107 42 1 3.3498 -0.0008 4.7320 43 1 2.7208 -1.0678 6.8602 44 1 0.9432 -0.0850 8.2521 45 1 -0.2010 1.9683 7.5189 46 1 0.4335 3.0398 5.3946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345481267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:06 Heat of formation + Delta-G solvation = -83.965198 kcal Electronic energy + Delta-G solvation = -25968.325351 eV Core-core repulsion = 22435.990767 eV Total energy + Delta-G solvation = -3532.334584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07297 -39.93458 -38.75485 -36.84290 -36.08406 -33.41107 -32.43506 -31.61294 -30.72503 -29.71598 -27.40921 -26.77685 -24.94491 -24.18474 -23.55138 -23.12521 -21.60835 -19.87322 -18.69626 -18.22847 -17.65362 -17.38951 -16.97289 -16.49026 -16.46935 -15.88541 -15.67243 -15.63511 -15.45331 -14.81354 -14.70063 -14.48103 -14.05551 -13.99106 -13.79636 -13.53483 -13.39053 -13.16708 -13.03684 -12.81810 -12.71579 -12.64837 -12.52509 -12.14895 -12.11316 -11.96975 -11.83309 -11.71622 -11.44577 -10.77824 -10.66049 -10.56706 -10.30087 -9.64589 -9.56550 -9.27332 -8.46209 -6.11487 0.67431 0.73822 1.44734 1.55743 1.71212 1.86489 2.15053 2.59115 2.82551 3.10295 3.36768 3.79800 4.06285 4.09495 4.13236 4.21916 4.27340 4.29469 4.32722 4.37515 4.44998 4.48045 4.51614 4.51867 4.58876 4.64994 4.71779 4.80621 4.81992 4.83646 4.85521 4.97281 4.98322 5.12223 5.22591 5.39154 5.40326 5.41974 5.74106 5.74955 5.82187 5.93762 6.13972 6.23762 6.29630 6.38179 6.55454 6.77266 7.46796 7.63799 8.93994 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.005365 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.700351 B = 5218.240138 C = 6631.483916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.613 5.613 4 C 0.119 3.881 5 C 0.051 3.949 6 O -0.398 6.398 7 C 0.027 3.973 8 C 0.511 3.489 9 O -0.562 6.562 10 C -0.104 4.104 11 C 0.074 3.926 12 H 0.006 0.994 13 C -0.555 4.555 14 H 0.035 0.965 15 C -0.024 4.024 16 N -0.940 5.940 17 Si 1.098 2.902 18 H -0.287 1.287 19 H -0.268 1.268 20 H -0.286 1.286 21 C -0.054 4.054 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.153 4.153 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.020 0.980 36 H 0.028 0.972 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.257 0.743 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.135 0.865 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -14.002 -9.899 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.347 5.347 4 C -0.004 4.004 5 C -0.027 4.027 6 O -0.317 6.317 7 C -0.069 4.069 8 C 0.301 3.699 9 O -0.439 6.439 10 C -0.144 4.144 11 C 0.055 3.945 12 H 0.024 0.976 13 C -0.593 4.593 14 H 0.053 0.947 15 C -0.223 4.223 16 N -0.579 5.579 17 Si 0.922 3.078 18 H -0.213 1.213 19 H -0.193 1.193 20 H -0.212 1.212 21 C -0.054 4.054 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.162 4.162 25 C -0.142 4.142 26 C -0.171 4.171 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.129 0.871 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.152 -12.392 -9.492 15.925 hybrid contribution -0.690 -0.243 -0.446 0.857 sum -3.842 -12.634 -9.938 16.528 Atomic orbital electron populations 1.22175 0.94965 1.03321 1.01781 1.21698 0.94808 0.80891 1.04066 1.48085 1.66503 1.15371 1.04787 1.21489 0.95092 0.98154 0.85638 1.22909 0.97564 0.83095 0.99101 1.87793 1.31273 1.24752 1.87927 1.22886 0.83052 1.02579 0.98391 1.21005 0.76238 0.86400 0.86306 1.90703 1.45513 1.20078 1.87598 1.21558 1.01743 0.99226 0.91889 1.17698 0.96090 0.92529 0.88183 0.97552 1.21747 0.91533 1.02444 1.43618 0.94657 1.26726 1.09020 0.93606 0.92923 1.70847 1.04461 1.40659 1.41918 0.83188 0.71757 0.76363 0.76444 1.21262 1.19311 1.21212 1.20599 0.92728 0.94022 0.98081 1.20981 0.99468 0.96086 0.97653 1.21398 0.97875 1.00628 0.94204 1.21311 0.97471 0.96628 1.00788 1.21297 1.00642 0.96557 0.95701 1.21115 0.99011 1.00049 0.96967 0.92064 0.89295 0.94019 0.88405 0.90781 0.87154 0.90402 0.90463 0.96143 0.95278 0.87785 0.92754 0.89347 0.89565 0.93224 0.87100 0.83921 0.83461 0.84671 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.52 16 2 C 0.11 2.56 5.75 86.38 0.50 3.05 16 3 N -0.61 -19.56 2.44 -821.80 -2.00 -21.56 16 4 C 0.12 3.32 5.81 86.38 0.50 3.82 16 5 C 0.05 1.40 6.28 71.98 0.45 1.85 16 6 O -0.40 -10.01 9.53 -148.98 -1.42 -11.43 16 7 C 0.03 0.53 11.01 113.37 1.25 1.78 16 8 C 0.51 21.81 7.43 87.66 0.65 22.46 16 9 O -0.56 -30.05 14.60 -3.04 -0.04 -30.09 16 10 C -0.10 -4.30 3.49 29.85 0.10 -4.19 16 11 C 0.07 3.78 1.31 -12.29 -0.02 3.77 16 12 H 0.01 0.37 6.23 -2.39 -0.01 0.36 16 13 C -0.56 -31.81 6.40 25.60 0.16 -31.64 16 14 H 0.04 2.02 7.82 -2.91 -0.02 2.00 16 15 C -0.02 -1.47 5.45 84.65 0.46 -1.01 16 16 N -0.94 -60.88 13.63 21.45 0.29 -60.58 16 17 Si 1.10 55.00 29.91 68.60 2.05 57.05 16 18 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 21 C -0.05 -2.46 4.77 -19.87 -0.09 -2.56 16 22 C -0.12 -5.02 8.88 22.27 0.20 -4.82 16 23 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 24 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 25 C -0.12 -4.37 10.05 22.27 0.22 -4.15 16 26 C -0.15 -6.62 9.67 22.27 0.22 -6.41 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 0.97 7.22 -2.39 -0.02 0.95 16 30 H 0.10 2.06 7.11 -2.39 -0.02 2.04 16 31 H 0.07 1.80 6.44 -2.39 -0.02 1.78 16 32 H 0.11 2.31 8.07 -2.38 -0.02 2.29 16 33 H 0.08 2.46 7.42 -2.39 -0.02 2.44 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 3.41 7.13 -2.39 -0.02 3.39 16 40 H 0.09 3.12 7.18 -2.39 -0.02 3.10 16 41 H 0.26 16.79 6.68 -92.71 -0.62 16.17 16 42 H 0.11 4.45 7.80 -2.91 -0.02 4.43 16 43 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 44 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 45 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 46 H 0.09 4.23 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -77.63 376.28 5.76 -71.87 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 1.09 Total: 23.48 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 5.79 Total: -28.73 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.71 Total: -82.14 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.46 Total: -41.52 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 2.05 Total: 57.05 kcal Total: -77.63 5.76 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345481267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.096 kcal (2) G-P(sol) polarization free energy of solvation -77.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds