Wall clock time and date at job start Tue Mar 31 2020 08:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47486 * 2 1 4 4 C 1.46498 * 120.00046 * 270.00061 * 3 2 1 5 5 C 1.52996 * 109.47180 * 269.99752 * 4 3 2 6 6 O 1.42893 * 109.47066 * 64.99828 * 5 4 3 7 7 C 1.42900 * 114.00056 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00053 * 89.99639 * 3 2 1 9 9 O 1.21281 * 120.00154 * 180.02562 * 8 3 2 10 10 C 1.50699 * 119.99832 * 0.27946 * 8 3 2 11 11 C 1.53010 * 109.47135 * 179.72530 * 10 8 3 12 12 H 1.09005 * 109.46912 * 304.99877 * 11 10 8 13 13 C 1.50696 * 109.47034 * 64.99653 * 11 10 8 14 14 H 1.08001 * 120.00351 * 234.67562 * 13 11 10 15 15 C 1.37875 * 119.99792 * 54.68322 * 13 11 10 16 16 N 1.31513 * 120.00244 * 4.89230 * 15 13 11 17 17 Si 1.86799 * 119.99932 * 184.89053 * 15 13 11 18 18 H 1.48503 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47359 * 119.99759 * 17 15 13 20 20 H 1.48500 * 109.47357 * 239.99888 * 17 15 13 21 21 C 1.50698 * 109.46937 * 185.00390 * 11 10 8 22 22 C 1.38234 * 119.99761 * 151.48813 * 21 11 10 23 23 C 1.38235 * 119.99764 * 179.78257 * 22 21 11 24 24 C 1.38239 * 120.00115 * 0.44057 * 23 22 21 25 25 C 1.38233 * 119.99793 * 359.81185 * 24 23 22 26 26 C 1.38234 * 120.00170 * 331.75234 * 21 11 10 27 27 H 1.09004 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47035 * 299.99920 * 1 2 3 29 29 H 1.08997 * 109.47078 * 59.99755 * 1 2 3 30 30 H 1.09003 * 109.47308 * 239.99519 * 2 1 3 31 31 H 1.09005 * 109.46833 * 120.00043 * 2 1 3 32 32 H 1.09002 * 109.47284 * 30.00157 * 4 3 2 33 33 H 1.09009 * 109.47180 * 149.99610 * 4 3 2 34 34 H 1.09004 * 109.47212 * 185.00085 * 5 4 3 35 35 H 1.09005 * 109.47106 * 304.99708 * 5 4 3 36 36 H 1.09005 * 109.47312 * 299.99887 * 7 6 5 37 37 H 1.09002 * 109.47496 * 59.99979 * 7 6 5 38 38 H 1.09000 * 109.47161 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.47186 * 299.71782 * 10 8 3 40 40 H 1.08993 * 109.47238 * 59.72643 * 10 8 3 41 41 H 0.96998 * 120.00245 * 180.02562 * 16 15 13 42 42 H 1.07995 * 120.00263 * 359.97438 * 22 21 11 43 43 H 1.08002 * 120.00289 * 180.26828 * 23 22 21 44 44 H 1.07998 * 120.00045 * 179.83611 * 24 23 22 45 45 H 1.08002 * 120.00291 * 180.02562 * 25 24 23 46 46 H 1.08008 * 119.99909 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 8 3.8944 0.4432 -1.9934 7 6 5.2179 0.1092 -2.4163 8 6 2.2430 2.0165 1.1672 9 8 2.6469 3.1601 1.1672 10 6 1.9977 1.3040 2.4723 11 6 2.3344 2.2396 3.6353 12 1 3.3557 2.6041 3.5244 13 6 1.3813 3.4069 3.6330 14 1 1.7642 4.4166 3.6175 15 6 0.0205 3.1858 3.6508 16 7 -0.4453 1.9614 3.7669 17 14 -1.1615 4.6253 3.5101 18 1 -0.3906 5.8889 3.3904 19 1 -2.0138 4.4503 2.3068 20 1 -2.0198 4.6813 4.7207 21 6 2.2073 1.4896 4.9362 22 6 2.9751 1.8590 6.0247 23 6 2.8552 1.1739 7.2194 24 6 1.9742 0.1137 7.3228 25 6 1.2102 -0.2590 6.2327 26 6 1.3269 0.4289 5.0394 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.9158 2.4161 -2.6064 35 1 4.3864 2.1341 -0.9130 36 1 5.4579 0.6583 -3.3269 37 1 5.9278 0.3761 -1.6334 38 1 5.2776 -0.9615 -2.6117 39 1 0.9500 1.0098 2.5343 40 1 2.6282 0.4165 2.5258 41 1 -1.4027 1.8058 3.7791 42 1 3.6662 2.6847 5.9428 43 1 3.4519 1.4653 8.0712 44 1 1.8825 -0.4232 8.2554 45 1 0.5216 -1.0870 6.3136 46 1 0.7299 0.1378 4.1877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345481271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:16 Heat of formation + Delta-G solvation = -54.973250 kcal Electronic energy + Delta-G solvation = -26284.625713 eV Core-core repulsion = 22753.548314 eV Total energy + Delta-G solvation = -3531.077399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -39.36802 -38.18018 -37.52766 -35.24237 -34.19749 -31.41040 -30.91504 -29.79602 -29.00558 -28.08280 -26.38979 -25.61662 -23.10570 -22.87531 -21.98368 -21.26048 -19.67746 -18.09891 -16.77542 -16.43678 -16.10058 -15.88233 -15.41920 -15.20412 -14.86537 -14.84470 -14.04678 -13.81925 -13.55167 -13.35998 -13.01190 -12.83885 -12.55261 -12.21073 -12.11106 -11.88861 -11.74576 -11.65109 -11.45554 -11.35939 -11.27932 -11.04833 -10.88036 -10.71436 -10.61554 -10.29854 -10.12860 -9.89923 -9.66217 -9.24231 -9.11987 -8.68825 -8.36457 -8.01790 -7.77375 -7.40483 -5.93974 -4.03177 2.52858 2.61582 3.31113 3.39242 3.46453 3.63275 3.72621 3.89673 4.46345 5.00833 5.14677 5.20930 5.28229 5.29513 5.39269 5.42514 5.47690 5.57908 5.61322 5.75326 5.83909 5.90442 5.93582 6.01081 6.04129 6.08278 6.21510 6.26549 6.43312 6.49392 6.65664 6.66788 6.75715 6.81201 7.12343 7.16560 7.18684 7.26217 7.31544 7.52306 7.58975 7.72749 7.97061 8.10456 8.21621 8.23808 8.39161 8.93331 9.24441 9.59610 11.00109 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.005215 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.672415 B = 5367.783037 C = 6324.233288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.622 5.622 4 C 0.121 3.879 5 C 0.046 3.954 6 O -0.387 6.387 7 C 0.033 3.967 8 C 0.526 3.474 9 O -0.531 6.531 10 C -0.136 4.136 11 C 0.086 3.914 12 H 0.035 0.965 13 C -0.467 4.467 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.026 4.026 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.068 4.068 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.050 0.950 41 H 0.259 0.741 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 -7.135 -8.110 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.358 5.358 4 C -0.003 4.003 5 C -0.032 4.032 6 O -0.306 6.306 7 C -0.064 4.064 8 C 0.317 3.683 9 O -0.406 6.406 10 C -0.176 4.176 11 C 0.067 3.933 12 H 0.054 0.946 13 C -0.504 4.504 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.027 4.027 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.173 4.173 25 C -0.161 4.161 26 C -0.086 4.086 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.049 -6.697 -8.068 11.638 hybrid contribution -0.689 0.966 -0.038 1.187 sum 4.360 -5.731 -8.106 10.843 Atomic orbital electron populations 1.22244 0.96515 1.01548 1.02905 1.21406 0.93791 0.82718 1.02782 1.48059 1.68113 1.14316 1.05282 1.21296 0.93515 0.99049 0.86395 1.23078 0.99012 0.82093 0.98969 1.87873 1.29520 1.25494 1.87728 1.22687 0.84667 1.01012 0.98043 1.21188 0.75256 0.86683 0.85206 1.90591 1.44931 1.17928 1.87130 1.21972 1.06354 0.97684 0.91604 1.17662 0.96348 0.92611 0.86668 0.94640 1.21002 0.90177 0.92245 1.47012 0.92327 1.24862 0.98137 0.95656 0.95241 1.69687 1.13052 1.18851 1.51284 0.86556 0.80988 0.83362 0.77324 1.19879 1.21220 1.21283 1.20343 0.92824 0.92422 0.97078 1.20894 1.00966 0.99824 0.93368 1.20793 1.00329 0.97699 0.97178 1.20758 0.99449 0.99111 0.97953 1.21044 1.00054 1.00614 0.94427 1.21356 0.95509 0.93934 0.97814 0.92320 0.90980 0.93298 0.90620 0.90601 0.90751 0.88740 0.93135 0.92742 0.94529 0.94257 0.89960 0.84779 0.93154 0.93062 0.87728 0.88148 0.88343 0.88109 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.12 1.72 5.76 -4.04 -0.02 1.70 16 3 N -0.62 -10.85 2.44 -173.69 -0.42 -11.27 16 4 C 0.12 1.83 5.81 -4.04 -0.02 1.81 16 5 C 0.05 0.63 6.28 37.16 0.23 0.86 16 6 O -0.39 -5.16 9.53 -35.23 -0.34 -5.49 16 7 C 0.03 0.33 11.01 101.05 1.11 1.44 16 8 C 0.53 11.33 7.42 -10.99 -0.08 11.25 16 9 O -0.53 -13.13 14.56 5.56 0.08 -13.05 16 10 C -0.14 -2.96 2.63 -27.88 -0.07 -3.03 16 11 C 0.09 2.09 1.97 -92.92 -0.18 1.91 16 12 H 0.04 0.88 7.91 -51.93 -0.41 0.47 16 13 C -0.47 -12.57 7.27 -34.44 -0.25 -12.82 16 14 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 15 C 0.06 1.59 5.12 -17.82 -0.09 1.50 16 16 N -0.89 -22.53 7.99 55.43 0.44 -22.09 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.03 -0.60 4.69 -104.63 -0.49 -1.09 16 22 C -0.13 -2.86 9.71 -39.58 -0.38 -3.24 16 23 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 24 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 25 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 26 C -0.07 -1.49 7.45 -39.58 -0.30 -1.79 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.27 7.24 -51.93 -0.38 0.89 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.01 7.11 -51.93 -0.37 0.64 16 31 H 0.08 1.13 6.43 -51.93 -0.33 0.79 16 32 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.09 1.54 7.42 -51.92 -0.39 1.15 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.13 3.05 3.78 -51.93 -0.20 2.85 16 40 H 0.05 1.00 7.40 -51.93 -0.38 0.61 16 41 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 42 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 46 H 0.14 3.13 5.18 -52.48 -0.27 2.86 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -29.31 366.77 -8.43 -37.75 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.34 Total: 5.47 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.36 Total: -13.38 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.02 Total: -33.36 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.25 Total: -18.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.31 -8.43 -37.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345481271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.224 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds