Wall clock time and date at job start Tue Mar 31 2020 10:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47345 * 2 1 4 4 C 1.42898 * 114.00339 * 184.62119 * 3 2 1 5 5 H 1.09000 * 109.46893 * 31.90669 * 4 3 2 6 6 C 1.52999 * 109.47444 * 151.90679 * 4 3 2 7 7 C 1.50701 * 109.47300 * 295.00270 * 6 4 3 8 8 O 1.21277 * 119.99883 * 0.02562 * 7 6 4 9 9 N 1.34770 * 119.99925 * 179.97438 * 7 6 4 10 10 C 1.39245 * 119.99918 * 184.70948 * 9 7 6 11 11 C 1.39484 * 119.83143 * 213.20632 * 10 9 7 12 12 C 1.36373 * 120.16362 * 179.71839 * 11 10 9 13 13 C 1.40873 * 119.82764 * 0.55522 * 12 11 10 14 14 C 1.41156 * 120.16222 * 179.69793 * 13 12 11 15 15 H 1.08002 * 119.99978 * 204.94786 * 14 13 12 16 16 C 1.39907 * 119.99846 * 24.95433 * 14 13 12 17 17 N 1.30872 * 120.00494 * 18.00186 * 16 14 13 18 18 Si 1.86805 * 119.99648 * 198.00341 * 16 14 13 19 19 H 1.48501 * 109.47193 * 89.99867 * 18 16 14 20 20 H 1.48497 * 109.47079 * 209.99574 * 18 16 14 21 21 H 1.48496 * 109.47525 * 330.00053 * 18 16 14 22 22 C 1.40859 * 119.67527 * 359.71972 * 13 12 11 23 23 C 1.36378 * 119.83019 * 359.97438 * 22 13 12 24 24 C 1.52997 * 109.47137 * 271.90903 * 4 3 2 25 25 C 1.53003 * 109.47322 * 178.11998 * 24 4 3 26 26 C 1.53004 * 109.47394 * 298.12162 * 24 4 3 27 27 H 1.09003 * 109.47169 * 59.99635 * 1 2 3 28 28 H 1.09000 * 109.47642 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46989 * 300.00335 * 1 2 3 30 30 H 1.09003 * 109.47294 * 240.00093 * 2 1 3 31 31 H 1.09003 * 109.47169 * 120.00365 * 2 1 3 32 32 H 1.08997 * 109.47006 * 174.99869 * 6 4 3 33 33 H 1.09000 * 109.46994 * 55.00285 * 6 4 3 34 34 H 0.96996 * 120.00220 * 4.71744 * 9 7 6 35 35 H 1.07996 * 119.91675 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.08884 * 180.27415 * 12 11 10 37 37 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.09271 * 179.97438 * 22 13 12 39 39 H 1.07997 * 119.92320 * 179.97438 * 23 22 13 40 40 H 1.09000 * 109.47501 * 58.12317 * 24 4 3 41 41 H 1.08999 * 109.46902 * 66.04679 * 25 24 4 42 42 H 1.09003 * 109.47431 * 186.04627 * 25 24 4 43 43 H 1.08997 * 109.47038 * 306.04826 * 25 24 4 44 44 H 1.09000 * 109.46826 * 59.99813 * 26 24 4 45 45 H 1.08998 * 109.46838 * 179.97438 * 26 24 4 46 46 H 1.08995 * 109.46709 * 299.99800 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4269 1.4615 -0.1052 5 1 3.8146 0.6358 -0.7019 6 6 3.7834 2.7885 -0.7781 7 6 3.2777 2.7838 -2.1977 8 8 2.6895 1.8147 -2.6286 9 7 3.4781 3.8569 -2.9880 10 6 2.9267 3.8929 -4.2661 11 6 3.6049 4.5445 -5.2962 12 6 3.0738 4.5790 -6.5518 13 6 1.8316 3.9645 -6.8044 14 6 1.2724 4.0014 -8.0999 15 1 0.2040 3.9117 -8.2297 16 6 2.1023 4.1542 -9.2159 17 7 3.3847 3.9130 -9.1157 18 14 1.3798 4.7024 -10.8490 19 1 1.4125 6.1848 -10.9320 20 1 2.1775 4.1267 -11.9614 21 1 -0.0248 4.2319 -10.9518 22 6 1.1500 3.3134 -5.7576 23 6 1.6966 3.2818 -4.5086 24 6 4.0471 1.4157 1.2927 25 6 5.5709 1.4909 1.1773 26 6 3.5388 2.6014 2.1154 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.8659 2.9164 -0.7784 33 1 3.3208 3.6095 -0.2303 34 1 4.0064 4.6041 -2.6665 35 1 4.5548 5.0193 -5.0998 36 1 3.6021 5.0800 -7.3495 37 1 3.9600 4.0193 -9.8894 38 1 0.1971 2.8404 -5.9436 39 1 1.1751 2.7833 -3.7048 40 1 3.7656 0.4847 1.7848 41 1 5.8578 2.4661 0.7840 42 1 6.0173 1.3505 2.1618 43 1 5.9233 0.7096 0.5039 44 1 2.4532 2.5477 2.1976 45 1 3.9804 2.5684 3.1114 46 1 3.8204 3.5322 1.6233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348416225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:18 Heat of formation + Delta-G solvation = -82.144725 kcal Electronic energy + Delta-G solvation = -25062.717969 eV Core-core repulsion = 21530.462327 eV Total energy + Delta-G solvation = -3532.255642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.89339 -38.51827 -37.03517 -35.37265 -34.34975 -32.91118 -31.31060 -30.05991 -29.49049 -28.56167 -27.34241 -25.28829 -24.07503 -22.73592 -21.64185 -20.79338 -19.77547 -19.26788 -17.39146 -17.09195 -16.74442 -16.24476 -15.42890 -15.17108 -15.06268 -14.67813 -13.99647 -13.93693 -13.90616 -13.28016 -13.22107 -13.09639 -12.71889 -12.53469 -12.23164 -12.15527 -12.05574 -11.88717 -11.76501 -11.60100 -11.33866 -11.24454 -11.11989 -11.00886 -10.91195 -10.86792 -10.70682 -10.50133 -9.94201 -9.54178 -9.34129 -9.28526 -9.02943 -8.81044 -7.50093 -6.93664 -6.71267 -4.26221 2.62743 3.05284 3.08925 3.12348 3.14113 3.46363 3.73384 3.84636 3.95067 4.56814 4.65456 4.70398 4.91558 5.11683 5.13394 5.19577 5.27951 5.36566 5.45247 5.45710 5.48740 5.55271 5.68924 5.73766 5.76661 5.81486 5.88592 5.90179 6.04644 6.14997 6.16523 6.22915 6.23814 6.49654 6.83466 6.99269 7.08071 7.23869 7.33933 7.37689 7.63659 7.78340 7.95398 8.07320 8.32132 8.37963 8.63098 8.87096 8.91641 9.06215 10.20170 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.002905 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.649889 B = 9637.139727 C =10368.543304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.368 6.368 4 C 0.114 3.886 5 H 0.067 0.933 6 C -0.141 4.141 7 C 0.499 3.501 8 O -0.524 6.524 9 N -0.655 5.655 10 C -0.004 4.004 11 C -0.115 4.115 12 C -0.154 4.154 13 C 0.105 3.895 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.216 4.216 23 C -0.076 4.076 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.143 4.143 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.280 0.720 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -2.259 17.843 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.055 3.945 5 H 0.085 0.915 6 C -0.181 4.181 7 C 0.286 3.714 8 O -0.400 6.400 9 N -0.299 5.299 10 C -0.096 4.096 11 C -0.136 4.136 12 C -0.174 4.174 13 C 0.102 3.898 14 C -0.489 4.489 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.419 5.419 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.236 4.236 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.207 4.207 26 C -0.201 4.201 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.226 0.774 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.078 -2.827 17.424 17.918 hybrid contribution 0.335 0.335 -0.650 0.804 sum 3.412 -2.492 16.775 17.299 Atomic orbital electron populations 1.21711 0.94141 1.01800 1.03002 1.22382 0.95315 0.84102 0.99476 1.87892 1.20397 1.26186 1.94257 1.21742 0.82099 0.96916 0.93737 0.91519 1.21895 1.02534 0.99810 0.93847 1.20441 0.80882 0.82824 0.87268 1.90677 1.41055 1.33488 1.74774 1.43032 1.52913 1.19140 1.14772 1.17176 0.96064 1.12641 0.83721 1.20217 0.97838 1.02439 0.93078 1.20868 0.98579 1.03383 0.94560 1.17650 0.91529 0.88042 0.92566 1.19559 0.94963 1.43838 0.90505 0.90393 1.25918 0.94553 0.92583 1.01218 1.69853 1.05326 1.34419 1.32256 0.86313 0.80189 0.79730 0.80487 1.19294 1.20368 1.18620 1.20650 1.02060 1.07162 0.93720 1.20275 0.93346 0.99037 0.96922 1.21641 0.95676 0.99846 0.96666 1.21888 0.94732 1.02217 1.01844 1.21795 1.01815 0.97565 0.98891 0.91530 0.91561 0.92376 0.93007 0.94383 0.88091 0.88260 0.77407 0.89280 0.86241 0.90915 0.88811 0.87884 0.91055 0.92154 0.92488 0.92503 0.91908 0.93179 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.34 16 2 C 0.06 0.81 6.51 37.16 0.24 1.05 16 3 O -0.37 -5.30 8.63 -49.66 -0.43 -5.72 16 4 C 0.11 1.41 1.45 -26.73 -0.04 1.37 16 5 H 0.07 0.91 7.56 -51.93 -0.39 0.52 16 6 C -0.14 -1.73 4.67 -27.88 -0.13 -1.86 16 7 C 0.50 8.82 7.44 -10.99 -0.08 8.73 16 8 O -0.52 -11.42 13.05 -8.87 -0.12 -11.53 16 9 N -0.66 -11.76 5.31 -9.74 -0.05 -11.81 16 10 C 0.00 -0.08 6.29 -83.57 -0.53 -0.61 16 11 C -0.12 -2.69 9.89 -39.79 -0.39 -3.08 16 12 C -0.15 -4.02 8.64 -39.26 -0.34 -4.35 16 13 C 0.10 2.86 5.57 -106.80 -0.59 2.26 16 14 C -0.46 -12.37 9.03 -37.85 -0.34 -12.72 16 15 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 16 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 17 N -0.79 -20.68 10.99 55.55 0.61 -20.07 16 18 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.22 -5.62 9.74 -39.26 -0.38 -6.00 16 23 C -0.08 -1.87 8.57 -39.79 -0.34 -2.22 16 24 C -0.12 -1.12 2.89 -90.62 -0.26 -1.38 16 25 C -0.15 -1.18 8.72 37.16 0.32 -0.85 16 26 C -0.14 -1.26 8.67 37.16 0.32 -0.94 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 31 H 0.04 0.40 7.78 -51.93 -0.40 0.00 16 32 H 0.10 0.97 6.37 -51.93 -0.33 0.64 16 33 H 0.10 1.10 6.68 -51.93 -0.35 0.75 16 34 H 0.39 5.49 8.81 -40.82 -0.36 5.13 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 3.18 6.19 -52.49 -0.32 2.85 16 37 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 38 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.10 2.54 6.38 -52.49 -0.33 2.20 16 40 H 0.07 0.66 7.78 -51.93 -0.40 0.26 16 41 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -31.04 370.00 -9.02 -40.06 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.33 Total: 9.87 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -2.25 Total: -20.13 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.56 Total: -31.89 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.54 Total: -17.26 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.04 -9.02 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348416225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.085 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds