Wall clock time and date at job start Tue Mar 31 2020 10:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47345 * 2 1 4 4 C 1.42898 * 114.00339 * 184.62119 * 3 2 1 5 5 H 1.09000 * 109.46893 * 31.90669 * 4 3 2 6 6 C 1.52999 * 109.47444 * 151.90679 * 4 3 2 7 7 C 1.50701 * 109.47300 * 295.00270 * 6 4 3 8 8 O 1.21277 * 119.99883 * 0.02562 * 7 6 4 9 9 N 1.34770 * 119.99925 * 179.97438 * 7 6 4 10 10 C 1.39245 * 119.99918 * 184.70948 * 9 7 6 11 11 C 1.39484 * 119.83143 * 213.20632 * 10 9 7 12 12 C 1.36373 * 120.16362 * 179.71839 * 11 10 9 13 13 C 1.40873 * 119.82764 * 0.55522 * 12 11 10 14 14 C 1.41156 * 120.16222 * 179.69793 * 13 12 11 15 15 H 1.08002 * 119.99978 * 204.94786 * 14 13 12 16 16 C 1.39907 * 119.99846 * 24.95433 * 14 13 12 17 17 N 1.30872 * 120.00494 * 18.00186 * 16 14 13 18 18 Si 1.86805 * 119.99648 * 198.00341 * 16 14 13 19 19 H 1.48501 * 109.47193 * 89.99867 * 18 16 14 20 20 H 1.48497 * 109.47079 * 209.99574 * 18 16 14 21 21 H 1.48496 * 109.47525 * 330.00053 * 18 16 14 22 22 C 1.40859 * 119.67527 * 359.71972 * 13 12 11 23 23 C 1.36378 * 119.83019 * 359.97438 * 22 13 12 24 24 C 1.52997 * 109.47137 * 271.90903 * 4 3 2 25 25 C 1.53003 * 109.47322 * 178.11998 * 24 4 3 26 26 C 1.53004 * 109.47394 * 298.12162 * 24 4 3 27 27 H 1.09003 * 109.47169 * 59.99635 * 1 2 3 28 28 H 1.09000 * 109.47642 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46989 * 300.00335 * 1 2 3 30 30 H 1.09003 * 109.47294 * 240.00093 * 2 1 3 31 31 H 1.09003 * 109.47169 * 120.00365 * 2 1 3 32 32 H 1.08997 * 109.47006 * 174.99869 * 6 4 3 33 33 H 1.09000 * 109.46994 * 55.00285 * 6 4 3 34 34 H 0.96996 * 120.00220 * 4.71744 * 9 7 6 35 35 H 1.07996 * 119.91675 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.08884 * 180.27415 * 12 11 10 37 37 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.09271 * 179.97438 * 22 13 12 39 39 H 1.07997 * 119.92320 * 179.97438 * 23 22 13 40 40 H 1.09000 * 109.47501 * 58.12317 * 24 4 3 41 41 H 1.08999 * 109.46902 * 66.04679 * 25 24 4 42 42 H 1.09003 * 109.47431 * 186.04627 * 25 24 4 43 43 H 1.08997 * 109.47038 * 306.04826 * 25 24 4 44 44 H 1.09000 * 109.46826 * 59.99813 * 26 24 4 45 45 H 1.08998 * 109.46838 * 179.97438 * 26 24 4 46 46 H 1.08995 * 109.46709 * 299.99800 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4269 1.4615 -0.1052 5 1 3.8146 0.6358 -0.7019 6 6 3.7834 2.7885 -0.7781 7 6 3.2777 2.7838 -2.1977 8 8 2.6895 1.8147 -2.6286 9 7 3.4781 3.8569 -2.9880 10 6 2.9267 3.8929 -4.2661 11 6 3.6049 4.5445 -5.2962 12 6 3.0738 4.5790 -6.5518 13 6 1.8316 3.9645 -6.8044 14 6 1.2724 4.0014 -8.0999 15 1 0.2040 3.9117 -8.2297 16 6 2.1023 4.1542 -9.2159 17 7 3.3847 3.9130 -9.1157 18 14 1.3798 4.7024 -10.8490 19 1 1.4125 6.1848 -10.9320 20 1 2.1775 4.1267 -11.9614 21 1 -0.0248 4.2319 -10.9518 22 6 1.1500 3.3134 -5.7576 23 6 1.6966 3.2818 -4.5086 24 6 4.0471 1.4157 1.2927 25 6 5.5709 1.4909 1.1773 26 6 3.5388 2.6014 2.1154 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.8659 2.9164 -0.7784 33 1 3.3208 3.6095 -0.2303 34 1 4.0064 4.6041 -2.6665 35 1 4.5548 5.0193 -5.0998 36 1 3.6021 5.0800 -7.3495 37 1 3.9600 4.0193 -9.8894 38 1 0.1971 2.8404 -5.9436 39 1 1.1751 2.7833 -3.7048 40 1 3.7656 0.4847 1.7848 41 1 5.8578 2.4661 0.7840 42 1 6.0173 1.3505 2.1618 43 1 5.9233 0.7096 0.5039 44 1 2.4532 2.5477 2.1976 45 1 3.9804 2.5684 3.1114 46 1 3.8204 3.5322 1.6233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348416225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:17 Heat of formation + Delta-G solvation = -99.292120 kcal Electronic energy + Delta-G solvation = -25063.461536 eV Core-core repulsion = 21530.462327 eV Total energy + Delta-G solvation = -3532.999209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30098 -39.79736 -38.73996 -36.25309 -36.11187 -34.70860 -32.29668 -31.54084 -31.29967 -30.17961 -27.97339 -26.93524 -25.28385 -23.74035 -23.40493 -22.59442 -21.25999 -20.27920 -19.29620 -18.51566 -17.88078 -17.74161 -17.03790 -16.49804 -16.14004 -16.08338 -15.68568 -15.10383 -14.82991 -14.69764 -14.66879 -14.19299 -14.05999 -13.97310 -13.69803 -13.64319 -13.20547 -13.03070 -13.00079 -12.84880 -12.78837 -12.68961 -12.47242 -12.40940 -12.07972 -11.82376 -11.77451 -11.68868 -11.43700 -11.36918 -11.13826 -10.77402 -10.52720 -10.28402 -9.47377 -8.84432 -8.60198 -6.27305 0.81928 1.13379 1.38636 1.46326 1.52237 1.91406 2.21643 2.41598 2.74838 2.80588 3.68327 3.73271 3.81803 4.03488 4.16561 4.23494 4.30645 4.36080 4.41710 4.45300 4.49676 4.51620 4.57752 4.69910 4.87027 4.90724 4.92318 4.93874 5.06015 5.08960 5.11364 5.12764 5.16870 5.24308 5.26680 5.32663 5.46417 5.48557 5.51272 5.65756 5.90490 6.03750 6.11919 6.37587 6.39281 6.64712 6.81697 6.92545 6.99763 7.51059 8.32738 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.002905 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.649889 B = 9637.139727 C =10368.543304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 O -0.390 6.390 4 C 0.108 3.892 5 H 0.047 0.953 6 C -0.129 4.129 7 C 0.495 3.505 8 O -0.569 6.569 9 N -0.649 5.649 10 C 0.011 3.989 11 C -0.113 4.113 12 C -0.171 4.171 13 C 0.075 3.925 14 C -0.498 4.498 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.824 5.824 18 Si 0.985 3.015 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.235 4.235 23 C -0.088 4.088 24 C -0.110 4.110 25 C -0.149 4.149 26 C -0.142 4.142 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.416 0.584 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.289 0.711 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.981 -1.380 19.467 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.310 6.310 4 C 0.050 3.950 5 H 0.065 0.935 6 C -0.168 4.168 7 C 0.284 3.716 8 O -0.447 6.447 9 N -0.294 5.294 10 C -0.082 4.082 11 C -0.133 4.133 12 C -0.191 4.191 13 C 0.072 3.928 14 C -0.527 4.527 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.450 5.450 18 Si 0.805 3.195 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.256 4.256 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.206 4.206 26 C -0.199 4.199 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.253 0.747 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.665 -1.930 19.096 19.752 hybrid contribution -0.109 -0.005 -1.001 1.007 sum 4.556 -1.935 18.095 18.759 Atomic orbital electron populations 1.21717 0.93574 1.02947 1.02090 1.22457 0.95865 0.83664 0.99523 1.87856 1.21694 1.27013 1.94439 1.21906 0.81415 0.96226 0.95460 0.93463 1.21972 1.04587 1.00586 0.89635 1.21463 0.79522 0.81659 0.88951 1.90673 1.42875 1.35210 1.75989 1.42993 1.52920 1.20461 1.13036 1.17247 0.94975 1.10246 0.85771 1.20496 0.98891 1.01918 0.92022 1.20895 0.98551 1.04054 0.95637 1.17963 0.92595 0.89051 0.93191 1.19775 0.95125 1.46295 0.91528 0.90919 1.26762 0.94773 0.91786 1.04621 1.69887 1.06540 1.34644 1.33880 0.85170 0.79226 0.79504 0.75584 1.18306 1.19143 1.18550 1.20764 1.02384 1.07920 0.94491 1.20346 0.94460 0.99678 0.96290 1.21560 0.96578 1.00315 0.94470 1.21899 0.93296 1.02673 1.02738 1.21786 1.00909 0.97463 0.99743 0.94233 0.89469 0.91336 0.95208 0.91956 0.84559 0.86206 0.74652 0.85708 0.87193 0.89985 0.89164 0.88335 0.91039 0.91112 0.91065 0.92960 0.93423 0.91616 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.06 1.55 6.51 71.98 0.47 2.02 16 3 O -0.39 -11.04 8.63 -135.19 -1.17 -12.21 16 4 C 0.11 2.53 1.45 30.59 0.04 2.57 16 5 H 0.05 1.28 7.56 -2.39 -0.02 1.26 16 6 C -0.13 -2.81 4.67 29.85 0.14 -2.67 16 7 C 0.49 16.86 7.44 87.66 0.65 17.51 16 8 O -0.57 -25.09 13.05 10.77 0.14 -24.95 16 9 N -0.65 -22.05 5.31 -303.11 -1.61 -23.66 16 10 C 0.01 0.51 6.29 38.56 0.24 0.75 16 11 C -0.11 -5.19 9.89 22.13 0.22 -4.97 16 12 C -0.17 -9.11 8.64 22.48 0.19 -8.91 16 13 C 0.07 4.23 5.57 -21.28 -0.12 4.11 16 14 C -0.50 -27.89 9.03 23.39 0.21 -27.68 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 16 C 0.04 1.82 5.13 85.24 0.44 2.26 16 17 N -0.82 -43.58 10.99 21.82 0.24 -43.34 16 18 Si 0.98 38.82 29.60 68.60 2.03 40.85 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.24 -12.84 9.74 22.48 0.22 -12.63 16 23 C -0.09 -4.45 8.57 22.14 0.19 -4.26 16 24 C -0.11 -1.78 2.89 -10.79 -0.03 -1.81 16 25 C -0.15 -1.84 8.72 71.98 0.63 -1.21 16 26 C -0.14 -2.06 8.67 71.98 0.62 -1.44 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.03 0.86 7.98 -2.39 -0.02 0.85 16 31 H 0.06 1.25 7.78 -2.39 -0.02 1.23 16 32 H 0.14 2.05 6.37 -2.39 -0.02 2.03 16 33 H 0.12 2.21 6.68 -2.39 -0.02 2.20 16 34 H 0.42 10.26 8.81 -92.71 -0.82 9.44 16 35 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.11 5.98 6.19 -2.91 -0.02 5.96 16 37 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 38 H 0.09 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.10 5.04 6.38 -2.91 -0.02 5.02 16 40 H 0.07 1.16 7.78 -2.39 -0.02 1.14 16 41 H 0.07 0.73 6.69 -2.39 -0.02 0.71 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.05 0.85 7.73 -2.39 -0.02 0.83 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.84 6.51 -2.39 -0.02 0.82 16 Total: -1.00 -70.65 370.00 4.65 -66.00 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.16 Total: 36.32 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.86 Total: -38.99 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -1.37 Total: -67.00 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -1.03 Total: -37.16 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -70.65 4.65 -66.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348416225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.297 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds