Wall clock time and date at job start Tue Mar 31 2020 10:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47234 * 2 1 4 4 C 1.42900 * 113.99925 * 175.47165 * 3 2 1 5 5 H 1.09001 * 109.47144 * 341.96181 * 4 3 2 6 6 C 1.53003 * 109.46640 * 221.96108 * 4 3 2 7 7 C 1.50702 * 109.46954 * 64.99941 * 6 4 3 8 8 O 1.21281 * 119.99995 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99830 * 179.97438 * 7 6 4 10 10 C 1.39236 * 119.99772 * 184.93026 * 9 7 6 11 11 C 1.39484 * 119.82848 * 214.92348 * 10 9 7 12 12 C 1.36382 * 120.16751 * 179.71513 * 11 10 9 13 13 C 1.40868 * 119.82338 * 0.57897 * 12 11 10 14 14 C 1.41153 * 120.16166 * 179.67399 * 13 12 11 15 15 H 1.08000 * 119.99997 * 205.23600 * 14 13 12 16 16 C 1.39909 * 120.00147 * 25.24345 * 14 13 12 17 17 N 1.30874 * 119.99765 * 15.21211 * 16 14 13 18 18 Si 1.86798 * 120.00173 * 195.21210 * 16 14 13 19 19 H 1.48498 * 109.47026 * 89.99855 * 18 16 14 20 20 H 1.48494 * 109.47117 * 209.99794 * 18 16 14 21 21 H 1.48498 * 109.46983 * 330.00081 * 18 16 14 22 22 C 1.40873 * 119.67654 * 359.69613 * 13 12 11 23 23 C 1.36372 * 119.82565 * 359.97438 * 22 13 12 24 24 C 1.52998 * 109.47376 * 101.96358 * 4 3 2 25 25 C 1.52996 * 109.47274 * 182.95001 * 24 4 3 26 26 C 1.53001 * 109.47230 * 302.95024 * 24 4 3 27 27 H 1.09002 * 109.47041 * 299.99620 * 1 2 3 28 28 H 1.08993 * 109.47104 * 60.00154 * 1 2 3 29 29 H 1.09003 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47338 * 120.00315 * 2 1 3 31 31 H 1.09006 * 109.46920 * 239.99454 * 2 1 3 32 32 H 1.08998 * 109.46504 * 184.99735 * 6 4 3 33 33 H 1.08991 * 109.47271 * 304.99995 * 6 4 3 34 34 H 0.96998 * 119.99657 * 4.93090 * 9 7 6 35 35 H 1.07995 * 119.91707 * 0.02562 * 11 10 9 36 36 H 1.07996 * 120.08825 * 180.24904 * 12 11 10 37 37 H 0.96994 * 120.00010 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.08266 * 179.97438 * 22 13 12 39 39 H 1.07997 * 119.91881 * 180.02562 * 23 22 13 40 40 H 1.08997 * 109.47146 * 62.94591 * 24 4 3 41 41 H 1.09000 * 109.46856 * 59.99734 * 25 24 4 42 42 H 1.08999 * 109.47328 * 180.02562 * 25 24 4 43 43 H 1.09002 * 109.47140 * 299.99984 * 25 24 4 44 44 H 1.09010 * 109.46987 * 61.29033 * 26 24 4 45 45 H 1.09000 * 109.47253 * 181.28953 * 26 24 4 46 46 H 1.09003 * 109.46906 * 301.29428 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4271 1.4614 0.1031 5 1 3.8406 0.5251 0.4779 6 6 3.7788 2.5964 1.0669 7 6 3.3055 2.2428 2.4533 8 8 2.7428 1.1869 2.6511 9 7 3.5086 3.0997 3.4736 10 6 3.1646 2.7309 4.7714 11 6 2.6728 3.6891 5.6578 12 6 2.3283 3.3342 6.9288 13 6 2.4816 1.9985 7.3492 14 6 2.1337 1.6249 8.6651 15 1 2.5996 0.7650 9.1233 16 6 1.1853 2.3683 9.3759 17 7 0.4085 3.2118 8.7451 18 14 1.0275 2.1569 11.2252 19 1 1.9291 3.1165 11.9117 20 1 -0.3759 2.4163 11.6351 21 1 1.4041 0.7699 11.5987 22 6 2.9843 1.0377 6.4500 23 6 3.3182 1.4062 5.1802 24 6 4.0159 1.7629 -1.2765 25 6 5.5421 1.8124 -1.1799 26 6 3.6024 0.6651 -2.2586 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5140 -0.8900 32 1 4.8590 2.7420 1.0778 33 1 3.2916 3.5149 0.7399 34 1 3.8943 3.9733 3.3038 35 1 2.5599 4.7135 5.3353 36 1 1.9439 4.0764 7.6127 37 1 -0.2488 3.7275 9.2378 38 1 3.1050 0.0118 6.7656 39 1 3.7034 0.6707 4.4895 40 1 3.6428 2.7247 -1.6285 41 1 5.9151 0.8506 -0.8278 42 1 5.9616 2.0276 -2.1626 43 1 5.8367 2.5945 -0.4802 44 1 2.5159 0.6452 -2.3449 45 1 4.0408 0.8678 -3.2358 46 1 3.9557 -0.2998 -1.8948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348416228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:23 Heat of formation + Delta-G solvation = -82.933820 kcal Electronic energy + Delta-G solvation = -25057.561555 eV Core-core repulsion = 21525.271695 eV Total energy + Delta-G solvation = -3532.289860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.87535 -38.51436 -37.05137 -35.14698 -34.36347 -32.92216 -31.56028 -30.16298 -29.51543 -28.67089 -27.20398 -25.27385 -23.79056 -22.59350 -21.53654 -20.72658 -20.12405 -19.46303 -17.35198 -16.95968 -16.84388 -16.33864 -15.58255 -15.18457 -14.76467 -14.59961 -14.32742 -13.91638 -13.74899 -13.26504 -13.16719 -12.96061 -12.60099 -12.51344 -12.30339 -12.09040 -12.07117 -11.97974 -11.80613 -11.61579 -11.31544 -11.26774 -11.12252 -10.95256 -10.90838 -10.82406 -10.70347 -10.59703 -9.94487 -9.54775 -9.31044 -9.25741 -9.06510 -8.82831 -7.51581 -6.93996 -6.70391 -4.28246 2.61909 3.05019 3.08269 3.11756 3.12678 3.44471 3.72024 3.86874 3.94752 4.64176 4.66080 4.68178 4.85381 5.15077 5.17989 5.24944 5.30590 5.39740 5.43124 5.46072 5.56515 5.61232 5.66867 5.69601 5.74652 5.82290 5.87728 5.92490 6.09943 6.14614 6.17582 6.23437 6.29375 6.44385 6.82507 6.97896 7.07214 7.23334 7.32321 7.42065 7.62200 7.78093 7.94034 8.06005 8.30428 8.36268 8.62565 8.85642 8.90940 9.04843 10.20896 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002869 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.652820 B = 9757.603513 C =10279.866186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.371 6.371 4 C 0.113 3.887 5 H 0.068 0.932 6 C -0.146 4.146 7 C 0.501 3.499 8 O -0.526 6.526 9 N -0.656 5.656 10 C -0.002 4.002 11 C -0.115 4.115 12 C -0.152 4.152 13 C 0.104 3.896 14 C -0.457 4.457 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.795 5.795 18 Si 0.910 3.090 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.215 4.215 23 C -0.076 4.076 24 C -0.114 4.114 25 C -0.150 4.150 26 C -0.148 4.148 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.280 0.720 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -0.124 -16.926 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.290 6.290 4 C 0.055 3.945 5 H 0.086 0.914 6 C -0.186 4.186 7 C 0.287 3.713 8 O -0.402 6.402 9 N -0.299 5.299 10 C -0.094 4.094 11 C -0.136 4.136 12 C -0.172 4.172 13 C 0.101 3.899 14 C -0.487 4.487 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.421 5.421 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.235 4.235 23 C -0.096 4.096 24 C -0.133 4.133 25 C -0.207 4.207 26 C -0.205 4.205 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.453 -0.588 -16.774 17.648 hybrid contribution 0.098 0.290 0.738 0.799 sum 5.551 -0.298 -16.036 16.972 Atomic orbital electron populations 1.21710 0.94349 1.01802 1.02797 1.22532 0.95149 0.83936 0.99947 1.87847 1.20301 1.26633 1.94261 1.21752 0.82374 0.97854 0.92558 0.91355 1.21980 1.02667 1.01061 0.92939 1.20441 0.79770 0.85117 0.85923 1.90666 1.40881 1.24411 1.84241 1.43039 1.62359 1.18317 1.06182 1.17164 1.13377 0.95031 0.83853 1.20255 1.01468 0.96648 0.95190 1.20953 1.04329 0.96851 0.95086 1.17661 0.88851 0.90899 0.92485 1.19563 1.19626 1.11455 0.98058 0.90442 1.25926 0.94083 0.93714 1.00719 1.69837 1.14830 1.19882 1.37550 0.86278 0.78057 0.79902 0.82274 1.19319 1.20339 1.18647 1.20644 1.11288 0.97952 0.93649 1.20185 0.99970 0.93984 0.95484 1.21583 0.95704 1.00280 0.95708 1.21902 0.94738 1.02155 1.01905 1.21869 1.01924 0.98140 0.98545 0.91626 0.92538 0.91566 0.92401 0.94055 0.88080 0.88577 0.77367 0.89249 0.85898 0.90918 0.88813 0.88344 0.90472 0.92523 0.92419 0.92185 0.91917 0.92750 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.49 16 2 C 0.06 0.82 5.79 37.16 0.22 1.04 16 3 O -0.37 -5.47 8.78 -49.64 -0.44 -5.91 16 4 C 0.11 1.41 1.40 -26.73 -0.04 1.37 16 5 H 0.07 0.92 7.43 -51.93 -0.39 0.54 16 6 C -0.15 -1.80 5.25 -27.88 -0.15 -1.94 16 7 C 0.50 8.79 7.43 -10.98 -0.08 8.71 16 8 O -0.53 -11.29 12.51 -8.85 -0.11 -11.40 16 9 N -0.66 -11.73 5.30 -9.74 -0.05 -11.78 16 10 C 0.00 -0.04 6.26 -83.57 -0.52 -0.57 16 11 C -0.12 -2.69 9.90 -39.79 -0.39 -3.09 16 12 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 13 C 0.10 2.82 5.58 -106.80 -0.60 2.22 16 14 C -0.46 -12.28 9.05 -37.85 -0.34 -12.62 16 15 H 0.08 2.00 7.89 -52.49 -0.41 1.59 16 16 C 0.07 1.84 5.19 -17.33 -0.09 1.75 16 17 N -0.80 -20.76 10.84 55.55 0.60 -20.16 16 18 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.22 -5.54 9.74 -39.26 -0.38 -5.93 16 23 C -0.08 -1.85 8.57 -39.79 -0.34 -2.19 16 24 C -0.11 -1.08 2.71 -90.62 -0.25 -1.32 16 25 C -0.15 -1.17 8.91 37.16 0.33 -0.84 16 26 C -0.15 -1.31 7.95 37.16 0.30 -1.02 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 31 H 0.04 0.47 6.09 -51.93 -0.32 0.15 16 32 H 0.10 0.96 6.27 -51.93 -0.33 0.64 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.39 5.51 8.82 -40.82 -0.36 5.15 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 3.28 6.10 -52.49 -0.32 2.96 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.10 2.34 6.51 -52.49 -0.34 1.99 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 44 H 0.06 0.61 6.51 -51.92 -0.34 0.27 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -30.84 368.14 -9.08 -39.92 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.31 Total: 10.23 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.29 Total: -20.22 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.55 Total: -31.94 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.55 Total: -17.31 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.84 -9.08 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348416228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.014 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds