Wall clock time and date at job start Tue Mar 31 2020 09:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46940 * 2 1 4 4 C 1.42891 * 114.00255 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47518 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47356 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.47121 * 179.97438 * 6 5 4 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 1.08998 * 109.47314 * 299.99864 * 1 2 3 28 28 H 1.08994 * 109.47036 * 60.00583 * 1 2 3 29 29 H 1.09005 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47437 * 239.99902 * 2 1 3 31 31 H 1.09002 * 109.46858 * 119.99097 * 2 1 3 32 32 H 1.09004 * 109.47051 * 59.99552 * 4 3 2 33 33 H 1.09002 * 109.47150 * 300.00166 * 4 3 2 34 34 H 1.09004 * 109.46707 * 59.99526 * 5 4 3 35 35 H 1.09003 * 109.46778 * 300.00637 * 5 4 3 36 36 H 1.08999 * 109.47126 * 60.00134 * 6 5 4 37 37 H 1.08996 * 109.46862 * 299.99835 * 6 5 4 38 38 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 39 39 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 40 40 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 41 41 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 42 42 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 43 43 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 44 44 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 45 45 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8253 2.9386 -0.0001 6 6 5.3504 3.0594 -0.0001 7 7 5.7281 4.4750 -0.0014 8 6 7.0295 4.8251 -0.0011 9 8 7.8880 3.9684 -0.0003 10 6 7.4181 6.2812 -0.0031 11 6 8.9433 6.4021 -0.0029 12 1 9.3536 5.8248 -0.8314 13 6 9.4891 5.8718 1.2979 14 1 8.9354 6.0148 2.2140 15 6 10.6952 5.2042 1.3182 16 7 11.1583 4.7173 2.4488 17 14 11.6717 4.9912 -0.2600 18 1 11.3174 3.6940 -0.8899 19 1 11.3501 6.0996 -1.1944 20 1 13.1239 5.0107 0.0501 21 6 9.3324 7.8497 -0.1581 22 6 9.0429 8.7547 0.8460 23 6 9.4034 10.0818 0.7054 24 6 10.0461 10.5055 -0.4428 25 6 10.3309 9.6015 -1.4491 26 6 9.9739 8.2737 -1.3068 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.8339 0.9766 -0.8891 33 1 3.8332 0.9769 0.8908 34 1 3.4220 3.4226 0.8894 35 1 3.4228 3.4215 -0.8906 36 1 5.7532 2.5755 -0.8899 37 1 5.7531 2.5764 0.8901 38 1 5.0414 5.1601 -0.0017 39 1 7.0147 6.7660 0.8860 40 1 7.0157 6.7635 -0.8939 41 1 12.0066 4.2473 2.4631 42 1 8.5375 8.4244 1.7415 43 1 9.1806 10.7881 1.4914 44 1 10.3253 11.5428 -0.5538 45 1 10.8327 9.9326 -2.3464 46 1 10.1968 7.5674 -2.0929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353313689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:17 Heat of formation + Delta-G solvation = -75.758599 kcal Electronic energy + Delta-G solvation = -24258.028876 eV Core-core repulsion = 20726.050157 eV Total energy + Delta-G solvation = -3531.978719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.24391 -38.49047 -38.19545 -35.28289 -33.98515 -32.41877 -31.63751 -30.67340 -30.18898 -28.92275 -26.34650 -24.74601 -23.07417 -22.57948 -21.86615 -21.59876 -20.18658 -19.09431 -17.00580 -16.92087 -16.64753 -16.48315 -15.82169 -15.38789 -15.26589 -14.55459 -14.43512 -14.35860 -14.03258 -13.72708 -13.21627 -13.04207 -12.83685 -12.72393 -12.51950 -12.32055 -12.05299 -11.94766 -11.82607 -11.73400 -11.63137 -11.22187 -11.11939 -10.93450 -10.73142 -10.51383 -10.33444 -9.85832 -9.84272 -9.59250 -9.14629 -8.93368 -8.60011 -8.40036 -8.18592 -7.79840 -5.95804 -3.93187 2.11239 2.16052 3.23066 3.45337 3.48973 3.50372 3.52513 3.84891 4.53918 4.60664 4.71951 4.80347 4.81519 4.94829 5.02886 5.10938 5.26319 5.33541 5.42041 5.44875 5.53225 5.57483 5.59047 5.61544 5.68761 5.71409 5.79895 5.95742 6.00503 6.06396 6.08760 6.15263 6.26543 6.34723 6.63879 6.70862 6.85264 6.86059 6.96928 7.04080 7.15796 7.28822 7.59697 7.74897 7.84864 8.05032 8.55332 9.01243 9.04170 9.69153 11.17267 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.002843 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.364624 B = 9847.069363 C =10835.986351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.065 3.935 5 C -0.128 4.128 6 C 0.125 3.875 7 N -0.748 5.748 8 C 0.513 3.487 9 O -0.501 6.501 10 C -0.116 4.116 11 C 0.056 3.944 12 H 0.050 0.950 13 C -0.488 4.488 14 H 0.071 0.929 15 C 0.085 3.915 16 N -0.900 5.900 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.255 1.255 20 H -0.295 1.295 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.135 4.135 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.394 0.606 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.261 0.739 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 -0.929 -6.864 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.012 4.012 5 C -0.166 4.166 6 C 0.000 4.000 7 N -0.404 5.404 8 C 0.300 3.700 9 O -0.373 6.373 10 C -0.157 4.157 11 C 0.037 3.963 12 H 0.068 0.932 13 C -0.525 4.525 14 H 0.089 0.911 15 C -0.117 4.117 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.203 1.203 19 H -0.179 1.179 20 H -0.222 1.222 21 C -0.041 4.041 22 C -0.118 4.118 23 C -0.146 4.146 24 C -0.167 4.167 25 C -0.146 4.146 26 C -0.153 4.153 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.008 -1.532 -6.771 17.449 hybrid contribution 0.589 -0.160 -0.625 0.873 sum -15.420 -1.692 -7.396 17.185 Atomic orbital electron populations 1.21745 0.93793 1.02194 1.03131 1.22455 0.95538 0.83840 1.00170 1.87855 1.21298 1.26452 1.95496 1.22366 0.81008 0.97065 1.00721 1.21669 0.95380 0.95692 1.03843 1.21024 0.92747 0.83822 1.02381 1.46092 1.08143 1.07104 1.79041 1.20836 0.81194 0.92376 0.75580 1.90745 1.48817 1.51975 1.45781 1.21662 1.00245 0.91824 1.01943 1.18129 0.90088 0.88287 0.99811 0.93230 1.20599 1.05434 1.34541 0.91915 0.91136 1.24888 0.97155 0.94041 0.95644 1.69889 1.20458 1.37467 1.25954 0.86950 0.78619 0.79461 0.85139 1.20254 1.17945 1.22181 1.20769 0.94386 0.97224 0.91689 1.20985 1.00020 0.92141 0.98682 1.21057 0.99985 0.96214 0.97372 1.20861 1.02134 0.98687 0.95049 1.20962 1.01083 0.93835 0.98701 1.21148 1.00790 0.95234 0.98134 0.91828 0.91885 0.91153 0.93408 0.93335 0.92996 0.92837 0.90466 0.90621 0.91913 0.91559 0.77263 0.89737 0.91346 0.92910 0.86181 0.87205 0.87464 0.87424 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -4.20 10.34 -35.23 -0.36 -4.57 16 4 C 0.07 0.65 5.94 37.16 0.22 0.87 16 5 C -0.13 -1.30 5.70 -26.73 -0.15 -1.45 16 6 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 7 N -0.75 -10.86 5.56 -60.29 -0.33 -11.20 16 8 C 0.51 10.03 7.58 -10.99 -0.08 9.95 16 9 O -0.50 -12.40 15.02 5.55 0.08 -12.31 16 10 C -0.12 -2.16 4.96 -27.88 -0.14 -2.29 16 11 C 0.06 1.28 1.17 -92.92 -0.11 1.17 16 12 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 13 C -0.49 -13.42 6.88 -34.44 -0.24 -13.65 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 15 C 0.08 2.51 5.47 -17.82 -0.10 2.41 16 16 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 17 Si 0.87 22.74 27.00 -169.99 -4.59 18.15 16 18 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.26 -6.13 4.72 56.52 0.27 -5.87 16 20 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 21 C -0.04 -0.84 4.65 -104.62 -0.49 -1.32 16 22 C -0.10 -1.95 8.93 -39.58 -0.35 -2.31 16 23 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 24 C -0.15 -2.43 10.05 -39.58 -0.40 -2.82 16 25 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 26 C -0.13 -2.64 8.70 -39.59 -0.34 -2.98 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.39 4.40 8.47 -40.82 -0.35 4.05 16 39 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 42 H 0.12 2.32 7.87 -52.49 -0.41 1.91 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 46 H 0.11 2.13 7.12 -52.48 -0.37 1.75 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -34.53 378.25 -8.94 -43.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.84 Total: 4.20 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.37 Total: -15.90 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.44 Total: -38.73 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.28 Total: -16.88 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.59 Total: 18.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.53 -8.94 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353313689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.290 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds