Wall clock time and date at job start Tue Mar 31 2020 09:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46940 * 2 1 4 4 C 1.42891 * 114.00255 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47518 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47356 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.47121 * 179.97438 * 6 5 4 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 1.08998 * 109.47314 * 299.99864 * 1 2 3 28 28 H 1.08994 * 109.47036 * 60.00583 * 1 2 3 29 29 H 1.09005 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47437 * 239.99902 * 2 1 3 31 31 H 1.09002 * 109.46858 * 119.99097 * 2 1 3 32 32 H 1.09004 * 109.47051 * 59.99552 * 4 3 2 33 33 H 1.09002 * 109.47150 * 300.00166 * 4 3 2 34 34 H 1.09004 * 109.46707 * 59.99526 * 5 4 3 35 35 H 1.09003 * 109.46778 * 300.00637 * 5 4 3 36 36 H 1.08999 * 109.47126 * 60.00134 * 6 5 4 37 37 H 1.08996 * 109.46862 * 299.99835 * 6 5 4 38 38 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 39 39 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 40 40 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 41 41 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 42 42 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 43 43 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 44 44 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 45 45 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8253 2.9386 -0.0001 6 6 5.3504 3.0594 -0.0001 7 7 5.7281 4.4750 -0.0014 8 6 7.0295 4.8251 -0.0011 9 8 7.8880 3.9684 -0.0003 10 6 7.4181 6.2812 -0.0031 11 6 8.9433 6.4021 -0.0029 12 1 9.3536 5.8248 -0.8314 13 6 9.4891 5.8718 1.2979 14 1 8.9354 6.0148 2.2140 15 6 10.6952 5.2042 1.3182 16 7 11.1583 4.7173 2.4488 17 14 11.6717 4.9912 -0.2600 18 1 11.3174 3.6940 -0.8899 19 1 11.3501 6.0996 -1.1944 20 1 13.1239 5.0107 0.0501 21 6 9.3324 7.8497 -0.1581 22 6 9.0429 8.7547 0.8460 23 6 9.4034 10.0818 0.7054 24 6 10.0461 10.5055 -0.4428 25 6 10.3309 9.6015 -1.4491 26 6 9.9739 8.2737 -1.3068 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.8339 0.9766 -0.8891 33 1 3.8332 0.9769 0.8908 34 1 3.4220 3.4226 0.8894 35 1 3.4228 3.4215 -0.8906 36 1 5.7532 2.5755 -0.8899 37 1 5.7531 2.5764 0.8901 38 1 5.0414 5.1601 -0.0017 39 1 7.0147 6.7660 0.8860 40 1 7.0157 6.7635 -0.8939 41 1 12.0066 4.2473 2.4631 42 1 8.5375 8.4244 1.7415 43 1 9.1806 10.7881 1.4914 44 1 10.3253 11.5428 -0.5538 45 1 10.8327 9.9326 -2.3464 46 1 10.1968 7.5674 -2.0929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353313689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:16 Heat of formation + Delta-G solvation = -98.685181 kcal Electronic energy + Delta-G solvation = -24259.023048 eV Core-core repulsion = 20726.050157 eV Total energy + Delta-G solvation = -3532.972890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76604 -39.81923 -39.09476 -36.56034 -35.70662 -33.76430 -33.30794 -31.60908 -31.52015 -30.30665 -28.04080 -26.05621 -24.16499 -23.69277 -23.26472 -22.58905 -21.66462 -20.69365 -18.99707 -18.02377 -17.79868 -17.43820 -17.17469 -16.70139 -16.47710 -16.20550 -15.80102 -15.44626 -15.29466 -15.15933 -14.78192 -14.40735 -14.23046 -14.06556 -13.84041 -13.52050 -13.46244 -13.28903 -12.92149 -12.70367 -12.68670 -12.62261 -12.55555 -12.03581 -11.96057 -11.88732 -11.85949 -11.77143 -11.47661 -11.03441 -10.71951 -10.57609 -10.51170 -9.95555 -9.59282 -9.28065 -8.21059 -6.17980 0.70480 0.75199 1.32890 1.37737 1.43234 1.93787 2.22563 2.42649 2.84122 3.10476 3.25662 3.94068 3.96365 4.10877 4.15733 4.16430 4.19940 4.32345 4.34334 4.37915 4.44983 4.48346 4.49279 4.51597 4.52213 4.66130 4.70566 4.86150 4.88066 4.89277 5.01957 5.06927 5.10587 5.17812 5.22318 5.27268 5.40287 5.43138 5.60302 5.70724 5.79084 5.85037 6.04964 6.23125 6.35027 6.38549 6.76551 6.81863 7.46447 7.55907 8.96063 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.002843 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.364624 B = 9847.069363 C =10835.986351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.408 6.408 4 C 0.064 3.936 5 C -0.113 4.113 6 C 0.125 3.875 7 N -0.727 5.727 8 C 0.509 3.491 9 O -0.564 6.564 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.033 0.967 13 C -0.464 4.464 14 H 0.034 0.966 15 C 0.021 3.979 16 N -0.955 5.955 17 Si 0.920 3.080 18 H -0.291 1.291 19 H -0.222 1.222 20 H -0.298 1.298 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.151 4.151 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.414 0.586 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.257 0.743 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 1.554 -8.948 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.328 6.328 4 C -0.013 4.013 5 C -0.151 4.151 6 C 0.001 3.999 7 N -0.382 5.382 8 C 0.296 3.704 9 O -0.441 6.441 10 C -0.152 4.152 11 C 0.037 3.963 12 H 0.051 0.949 13 C -0.502 4.502 14 H 0.053 0.947 15 C -0.175 4.175 16 N -0.597 5.597 17 Si 0.747 3.253 18 H -0.218 1.218 19 H -0.145 1.145 20 H -0.225 1.225 21 C -0.064 4.064 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.169 4.169 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.251 0.749 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.127 0.873 43 H 0.156 0.844 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.527 1.000 -8.881 19.674 hybrid contribution 0.877 -0.842 0.039 1.216 sum -16.651 0.159 -8.842 18.854 Atomic orbital electron populations 1.21764 0.92716 1.03387 1.02769 1.22678 0.96486 0.82869 1.00832 1.87820 1.21346 1.28060 1.95621 1.22352 0.81067 0.96766 1.01100 1.21506 0.92588 0.96312 1.04660 1.21063 0.94991 0.82616 1.01244 1.45857 1.07082 1.08468 1.76789 1.21090 0.82121 0.92335 0.74807 1.90727 1.50835 1.53425 1.49082 1.21597 0.97620 0.91710 1.04295 1.18011 0.92563 0.89517 0.96172 0.94913 1.20837 1.03998 1.32565 0.92810 0.94749 1.25644 0.98868 0.94865 0.98152 1.70035 1.21253 1.40312 1.28116 0.86153 0.76972 0.79643 0.82553 1.21752 1.14506 1.22468 1.20494 0.96508 0.96007 0.93441 1.21015 1.01053 0.93468 0.98105 1.21391 0.99003 0.95420 0.98579 1.21333 1.00120 1.00440 0.93864 1.21335 1.00151 0.92710 1.00086 1.21258 1.01142 0.96767 0.97728 0.92284 0.92109 0.89223 0.92573 0.92865 0.92323 0.92901 0.90021 0.89323 0.92367 0.93548 0.74891 0.88607 0.87495 0.93393 0.87336 0.84416 0.83647 0.84234 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -8.28 10.34 -148.98 -1.54 -9.82 16 4 C 0.06 1.21 5.94 71.98 0.43 1.64 16 5 C -0.11 -2.14 5.70 30.59 0.17 -1.96 16 6 C 0.13 3.28 5.67 86.38 0.49 3.77 16 7 N -0.73 -20.51 5.56 -463.06 -2.57 -23.08 16 8 C 0.51 19.99 7.58 87.66 0.66 20.65 16 9 O -0.56 -28.89 15.02 -3.04 -0.05 -28.93 16 10 C -0.11 -4.08 4.96 29.85 0.15 -3.93 16 11 C 0.06 2.60 1.17 -12.29 -0.01 2.58 16 12 H 0.03 1.60 4.94 -2.39 -0.01 1.59 16 13 C -0.46 -26.49 6.88 25.60 0.18 -26.32 16 14 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 15 C 0.02 1.26 5.47 84.65 0.46 1.73 16 16 N -0.96 -63.26 13.96 21.45 0.30 -62.96 16 17 Si 0.92 48.33 27.00 68.60 1.85 50.19 16 18 H -0.29 -15.79 7.11 99.48 0.71 -15.08 16 19 H -0.22 -10.34 4.72 99.48 0.47 -9.87 16 20 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 21 C -0.06 -2.60 4.65 -19.87 -0.09 -2.69 16 22 C -0.12 -4.45 8.93 22.27 0.20 -4.25 16 23 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 24 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 25 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 26 C -0.15 -5.51 8.70 22.27 0.19 -5.32 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.41 8.38 8.47 -92.70 -0.79 7.59 16 39 H 0.10 3.25 8.05 -2.38 -0.02 3.23 16 40 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 42 H 0.11 4.22 7.87 -2.91 -0.02 4.20 16 43 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 45 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 46 H 0.11 3.97 7.12 -2.91 -0.02 3.95 16 Total: -1.00 -79.48 378.25 2.64 -76.84 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.07 Total: 22.52 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.72 Total: -24.75 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.27 Total: -86.04 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.59 Total: -38.75 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.85 Total: 50.19 kcal Total: -79.48 2.64 -76.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353313689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.847 kcal (2) G-P(sol) polarization free energy of solvation -79.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds