Wall clock time and date at job start Tue Mar 31 2020 08:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47033 * 2 1 4 4 C 1.46503 * 120.00046 * 270.00337 * 3 2 1 5 5 C 1.52999 * 109.46669 * 269.99626 * 4 3 2 6 6 C 1.53001 * 109.47094 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47311 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00015 * 89.99748 * 3 2 1 9 9 O 1.21284 * 120.00090 * 180.02562 * 8 3 2 10 10 C 1.50706 * 119.99980 * 0.02562 * 8 3 2 11 11 C 1.52994 * 109.46995 * 179.97438 * 10 8 3 12 12 H 1.08998 * 109.47363 * 54.05802 * 11 10 8 13 13 C 1.50705 * 109.47281 * 294.05789 * 11 10 8 14 14 H 1.07999 * 119.99468 * 330.08103 * 13 11 10 15 15 C 1.37873 * 120.00025 * 150.08844 * 13 11 10 16 16 N 1.31515 * 120.00158 * 6.56401 * 15 13 11 17 17 Si 1.86805 * 119.99647 * 186.56809 * 15 13 11 18 18 H 1.48498 * 109.47129 * 269.99471 * 17 15 13 19 19 H 1.48498 * 109.47291 * 29.99590 * 17 15 13 20 20 H 1.48503 * 109.46813 * 149.99580 * 17 15 13 21 21 C 1.50704 * 109.47072 * 174.05777 * 11 10 8 22 22 C 1.38232 * 120.00156 * 64.29986 * 21 11 10 23 23 C 1.38227 * 120.00423 * 179.81276 * 22 21 11 24 24 C 1.38238 * 119.99674 * 0.39266 * 23 22 21 25 25 C 1.38237 * 119.99909 * 359.86442 * 24 23 22 26 26 C 1.38229 * 119.99861 * 359.94762 * 25 24 23 27 27 H 1.09001 * 109.46581 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46969 * 300.00187 * 1 2 3 29 29 H 1.09001 * 109.46648 * 60.00133 * 1 2 3 30 30 H 1.09005 * 109.46818 * 240.00107 * 2 1 3 31 31 H 1.08993 * 109.46800 * 120.00130 * 2 1 3 32 32 H 1.08997 * 109.47337 * 29.99529 * 4 3 2 33 33 H 1.08998 * 109.47138 * 150.00271 * 4 3 2 34 34 H 1.08996 * 109.47480 * 300.00452 * 5 4 3 35 35 H 1.09005 * 109.47430 * 60.00231 * 5 4 3 36 36 H 1.08997 * 109.47169 * 300.00060 * 6 5 4 37 37 H 1.08995 * 109.47249 * 59.99886 * 6 5 4 38 38 H 0.96700 * 114.00337 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.46642 * 59.99829 * 10 8 3 40 40 H 1.09002 * 109.46876 * 299.99722 * 10 8 3 41 41 H 0.96995 * 120.00002 * 354.72529 * 16 15 13 42 42 H 1.08007 * 119.99790 * 359.97438 * 22 21 11 43 43 H 1.08004 * 120.00499 * 180.23296 * 23 22 21 44 44 H 1.08006 * 119.99774 * 179.83158 * 24 23 22 45 45 H 1.08002 * 119.99968 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 3.9624 2.5522 -3.0357 7 8 5.3118 2.3273 -3.4485 8 6 2.2430 2.0166 1.1672 9 8 2.6468 3.1602 1.1672 10 6 1.9923 1.3060 2.4723 11 6 2.3241 2.2432 3.6352 12 1 1.7712 3.1754 3.5197 13 6 3.8029 2.5336 3.6401 14 1 4.4990 1.7974 3.2660 15 6 4.2672 3.7389 4.1223 16 7 3.4362 4.5818 4.6957 17 14 6.0764 4.1749 3.9610 18 1 6.8098 3.6959 5.1601 19 1 6.6355 3.5271 2.7474 20 1 6.2223 5.6484 3.8474 21 6 1.9367 1.5871 4.9354 22 6 2.5757 0.4313 5.3437 23 6 2.2231 -0.1684 6.5382 24 6 1.2258 0.3833 7.3205 25 6 0.5831 1.5361 6.9096 26 6 0.9385 2.1379 5.7170 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5818 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 4.3883 2.2155 -0.9507 35 1 3.8746 0.7623 -1.8407 36 1 3.2816 2.1677 -3.7951 37 1 3.7952 3.6214 -2.9058 38 1 5.5445 2.7562 -4.2833 39 1 2.6229 0.4187 2.5298 40 1 0.9444 1.0114 2.5302 41 1 2.4854 4.3905 4.7114 42 1 3.3523 -0.0017 4.7307 43 1 2.7249 -1.0693 6.8591 44 1 0.9484 -0.0868 8.2525 45 1 -0.1964 1.9669 7.5206 46 1 0.4366 3.0388 5.3962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356531826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:12 Heat of formation + Delta-G solvation = -75.718609 kcal Electronic energy + Delta-G solvation = -25643.154089 eV Core-core repulsion = 22111.177104 eV Total energy + Delta-G solvation = -3531.976985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.57114 -38.39711 -37.11411 -35.69723 -34.27649 -32.71766 -31.22700 -30.10330 -29.80144 -28.90346 -25.93152 -24.46026 -23.23710 -22.72456 -21.70607 -21.44242 -19.94778 -18.48621 -17.36440 -16.87491 -16.57196 -16.00440 -15.83692 -15.35289 -14.63589 -14.44288 -14.11744 -13.86310 -13.64233 -13.50093 -13.28345 -13.08579 -12.89255 -12.58702 -12.31297 -12.19993 -12.09150 -11.98731 -11.66914 -11.45847 -11.17106 -11.11374 -10.90731 -10.76739 -10.67364 -10.41057 -10.12666 -10.02009 -10.01714 -9.61567 -8.97886 -8.61402 -8.31903 -8.22947 -8.13199 -7.61862 -6.21015 -3.88301 2.19873 2.25840 3.31217 3.44973 3.51821 3.59127 3.72170 4.25401 4.62185 4.68378 4.86382 4.98730 5.13271 5.17213 5.22289 5.34385 5.42191 5.47510 5.58660 5.60327 5.63857 5.64670 5.69925 5.76952 5.78813 5.83346 6.01375 6.10807 6.13951 6.17590 6.22302 6.32786 6.35190 6.44194 6.69520 6.79353 6.90955 6.96911 7.21435 7.23445 7.39286 7.53900 7.73627 7.86096 7.89805 8.25041 8.53649 8.97625 9.01631 9.80756 11.19419 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.004997 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.716719 B = 5602.407459 C = 7275.840880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.629 5.629 4 C 0.124 3.876 5 C -0.137 4.137 6 C 0.080 3.920 7 O -0.574 6.574 8 C 0.516 3.484 9 O -0.496 6.496 10 C -0.114 4.114 11 C 0.071 3.929 12 H 0.050 0.950 13 C -0.566 4.566 14 H 0.045 0.955 15 C 0.033 3.967 16 N -0.906 5.906 17 Si 1.064 2.936 18 H -0.291 1.291 19 H -0.290 1.290 20 H -0.285 1.285 21 C -0.029 4.029 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.130 4.130 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.376 0.624 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.270 0.730 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 -9.842 -10.883 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.366 5.366 4 C 0.000 4.000 5 C -0.176 4.176 6 C 0.002 3.998 7 O -0.379 6.379 8 C 0.305 3.695 9 O -0.367 6.367 10 C -0.154 4.154 11 C 0.052 3.948 12 H 0.068 0.932 13 C -0.604 4.604 14 H 0.063 0.937 15 C -0.173 4.173 16 N -0.542 5.542 17 Si 0.894 3.106 18 H -0.218 1.218 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.030 4.030 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.172 4.172 25 C -0.142 4.142 26 C -0.149 4.149 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.223 0.777 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.643 -8.368 -9.900 13.769 hybrid contribution -1.094 -0.948 -0.873 1.690 sum -5.737 -9.316 -10.773 15.354 Atomic orbital electron populations 1.22226 0.96373 1.01848 1.02492 1.21445 0.94030 0.83146 1.02889 1.48143 1.68501 1.14209 1.05773 1.21104 0.94419 0.98971 0.85463 1.21908 0.98284 1.00984 0.96446 1.22087 0.82787 0.99065 0.95870 1.86512 1.29645 1.77420 1.44316 1.20904 0.76715 0.87096 0.84806 1.90739 1.41842 1.17606 1.86523 1.21722 1.00278 1.00130 0.93308 1.17885 0.98610 0.93096 0.85190 0.93164 1.21545 0.89787 1.03268 1.45794 0.93683 1.25561 1.06088 0.92956 0.92683 1.70728 1.04889 1.39596 1.39003 0.83620 0.74866 0.76277 0.75859 1.21840 1.21576 1.21111 1.20821 0.90841 0.92500 0.98848 1.20911 0.99277 0.96275 0.96175 1.21009 0.98155 0.99967 0.95607 1.20821 0.98887 0.97641 0.99804 1.20963 1.00188 0.96313 0.96785 1.21063 0.98390 0.99963 0.95441 0.91849 0.92118 0.92691 0.91073 0.90201 0.91377 0.89981 0.90255 0.91550 0.93956 0.93380 0.77715 0.90377 0.91714 0.91875 0.86785 0.87462 0.87600 0.87482 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.24 37.16 0.38 -1.34 16 2 C 0.11 1.25 5.93 -4.04 -0.02 1.23 16 3 N -0.63 -9.67 2.47 -173.68 -0.43 -10.10 16 4 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 5 C -0.14 -1.92 5.91 -26.73 -0.16 -2.08 16 6 C 0.08 0.92 7.05 37.16 0.26 1.18 16 7 O -0.57 -7.04 13.66 -35.23 -0.48 -7.52 16 8 C 0.52 10.46 7.43 -10.98 -0.08 10.38 16 9 O -0.50 -12.46 14.60 5.55 0.08 -12.38 16 10 C -0.11 -2.25 3.49 -27.88 -0.10 -2.34 16 11 C 0.07 1.72 1.31 -92.92 -0.12 1.60 16 12 H 0.05 1.37 6.23 -51.93 -0.32 1.04 16 13 C -0.57 -15.58 6.40 -34.44 -0.22 -15.80 16 14 H 0.04 1.25 7.82 -52.49 -0.41 0.84 16 15 C 0.03 0.95 5.45 -17.82 -0.10 0.86 16 16 N -0.91 -27.94 13.63 55.43 0.76 -27.18 16 17 Si 1.06 26.90 29.91 -169.99 -5.08 21.81 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C -0.03 -0.65 4.77 -104.62 -0.50 -1.15 16 22 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16 23 C -0.13 -2.34 10.05 -39.59 -0.40 -2.73 16 24 C -0.15 -2.68 10.05 -39.58 -0.40 -3.07 16 25 C -0.12 -2.30 10.05 -39.59 -0.40 -2.69 16 26 C -0.13 -2.74 9.67 -39.59 -0.38 -3.13 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.70 7.22 -51.93 -0.38 0.33 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.08 0.93 6.44 -51.93 -0.33 0.60 16 32 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.08 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.38 2.64 9.12 45.56 0.42 3.06 16 39 H 0.08 1.45 7.12 -51.93 -0.37 1.08 16 40 H 0.06 1.12 7.19 -51.93 -0.37 0.75 16 41 H 0.27 8.22 6.68 -40.82 -0.27 7.94 16 42 H 0.11 2.28 7.80 -52.48 -0.41 1.88 16 43 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -35.04 377.83 -8.77 -43.80 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.70 Total: 5.89 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.61 Total: -20.02 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.33 Total: -37.28 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.40 Total: -19.90 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -5.08 Total: 21.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.04 -8.77 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356531826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.917 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds